F102388

General Info

Members Datasets Scaffolds Average Seq Length
119 54 238 398

Family's Representative Sequence

Representative Sequence 3300033524|Ga0316592_1011988|Ga0316592_10119882
Length 441
Sequence MNAATRNYLTVTGGYWAFTITDGAIRMLVVLYFHQLGYSPFEVAMLFLFYEVFGIVTNLVGGWLGARVGLNLTMHIGMALQVAALLMLTVPDSWLSVVYVMAAQALSGIAKDLNKMSAKASVKSLTGPGAAGESKLFKYVAVLTGSKNALKGAGFFVGAALLQSIGFRGALHVLAGVLFVVLVITALLLPSGVGKLKEKAKFTQVFSNTPAVNWLSAARFFLFGARDVWFVVALPVFLYEVLGWAFTEVGGFLALWVIGYGVVQAAAPGLLRRGRHGAGPSGGTARAWALVLALIPAGIALGMTHGPARVPELATALTDLTGLSLDWLLEASALQVQGAVLVAGLVLFGIVFAINSAVHSYLILAYSDFQKVSLNVGFYYMANAGGRLAGTVLSGLVYQTQGLTGCLWWSAVFVAAAWVLSWQLPAVVTSANTADTGTTDV

Samples

Sample ID Description Type Environment
1 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
2 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
5 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
6 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
7 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
8 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
9 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
10 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
11 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
12 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
13 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
14 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
15 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
16 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
17 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
18 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
19 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
20 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
21 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
22 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
23 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
24 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
25 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
26 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
27 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
28 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
29 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
30 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
31 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
32 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
33 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
34 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
35 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
36 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
37 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
38 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
39 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
40 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
41 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
42 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
43 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
44 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
45 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
46 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
47 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
48 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
49 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
50 2728369097 Stutzerimonas balearica st101 Isolate Unclassified
51 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
52 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
53 2919543075 Aeromonas salmonicida masoucida 4076 Isolate Unclassified
54 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.08
Metatranscriptomes 3.36
Isolates 7.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.68
Nodule 0
Rhizoplane 0
Rhizosphere 52.1
Stem 0
Stem Tuber 0
Unclassified 0.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316592_1011988 3300033524 Bacteria 1771
2 Ga0055524_1002787 3300003775 Bacteria 8784
3 Ga0065714_10066385 3300005288 Bacteria 6964
4 Ga0068861_100005170 3300005719 Bacteria 8802
5 Ga0105249_10031543 3300009553 Bacteria 4793
6 Ga0209256_1001082 3300025299 Bacteria 31461
7 Ga0207712_10243450 3300025961 Bacteria 1450
8 Ga0265319_1002716 3300028563 Bacteria 9494
9 Ga0265319_1007407 3300028563 Bacteria 4941
10 Ga0265318_10002169 3300028577 Bacteria 10640
11 Ga0316181_1044262 3300030744 Bacteria 2282
12 Ga0265320_10003967 3300031240 Bacteria 9762
13 Ga0265320_10073109 3300031240 Bacteria 1612
14 Ga0265316_10063495 3300031344 Bacteria 2864
15 Ga0307408_100228861 3300031548 Bacteria 1521
16 Ga0265313_10017818 3300031595 Bacteria 4014
17 Ga0316579_10021027 3300031691 Bacteria 2903
18 Ga0316576_10004237 3300031727 Bacteria 8567
19 Ga0316576_10017762 3300031727 Bacteria 4842
20 Ga0316576_10021049 3300031727 Bacteria 4503
21 Ga0316576_10022215 3300031727 Bacteria 4403
22 Ga0316576_10022762 3300031727 Bacteria 4356
23 Ga0316576_10029975 3300031727 Bacteria 3849
24 Ga0316578_10002709 3300031728 Bacteria 7879
25 Ga0316578_10008663 3300031728 Bacteria 5190
26 Ga0316578_10071329 3300031728 Bacteria 2057
27 Ga0307516_10003783 3300031730 Bacteria 19218
28 Ga0307415_100234520 3300032126 Bacteria 1480
29 Ga0316583_10015406 3300032133 Bacteria 2751
30 Ga0316587_1008589 3300033529 Bacteria 1608
31 Ga0316596_1002459 3300033541 Bacteria 3955
32 Ga0316596_1004844 3300033541 Bacteria 3043
33 Ga0316574_0001466 3300035398 Bacteria 11223
34 Ga0316574_0013996 3300035398 Bacteria 4625
35 Ga0316574_0016923 3300035398 Bacteria 4256
36 Ga0316574_0024748 3300035398 Bacteria 3597
37 Ga0316574_0031265 3300035398 Bacteria 3229
38 Ga0316574_0116473 3300035398 Bacteria 1714
39 Ga0316574_0118881 3300035398 Bacteria 1696
40 Ga0316574_0221792 3300035398 Bacteria 1211
41 Ga0316582_0007941 3300036647 Bacteria 5676
42 Ga0316582_0008369 3300036647 Bacteria 5557
43 Ga0316582_0044273 3300036647 Bacteria 2797
44 Ga0316582_0048706 3300036647 Bacteria 2679
45 Ga0316582_0050864 3300036647 Bacteria 2627
46 Ga0316584_0000520 3300036712 Bacteria 20450
47 Ga0316584_0084507 3300036712 Bacteria 2377
48 Ga0316584_0137531 3300036712 Bacteria 1823
49 Ga0316584_0149766 3300036712 Bacteria 1737
50 Ga0316584_0154126 3300036712 Bacteria 1709
51 Ga0316584_0164354 3300036712 Bacteria 1648
52 Ga0316581_0008258 3300037588 Bacteria 2826
53 Ga0316581_0009966 3300037588 Bacteria 2624
54 Ga0400484_17864 3300038725 Bacteria 22637
55 Ga0400490_10264 3300038726 Bacteria 43479
56 Ga0400490_25062 3300038726 Bacteria 21402
57 Ga0400490_26521 3300038726 Bacteria 7944
58 Ga0400490_39098 3300038726 Bacteria 38577
59 Ga0400490_45202 3300038726 Bacteria 14472
60 Ga0400491_00992 3300038727 Bacteria 10067
61 Ga0400491_10523 3300038727 Bacteria 2683
62 Ga0400491_18626 3300038727 Bacteria 1842
63 Ga0400491_21104 3300038727 Bacteria 1341
64 Ga0400491_22768 3300038727 Bacteria 10494
65 Ga0400485_01340 3300038735 Bacteria 2783
66 Ga0400485_19690 3300038735 Bacteria 47761
67 Ga0400488_01808 3300038741 Bacteria 3178
68 Ga0400488_09686 3300038741 Bacteria 1193
69 Ga0400488_15761 3300038741 Bacteria 8006
70 Ga0400488_26702 3300038741 Bacteria 13144
71 Ga0400488_42297 3300038741 Bacteria 5577
72 Ga0400488_51040 3300038741 Bacteria 4587
73 Ga0400486_23232 3300038742 Bacteria 285561
74 Ga0400486_23915 3300038742 Bacteria 8520
75 Ga0400486_32882 3300038742 Bacteria 4456
76 Ga0400483_006129 3300039062 Bacteria 10393
77 Ga0400483_037604 3300039062 Bacteria 9096
78 Ga0400483_047227 3300039062 Unclassified 2848
79 Ga0400483_067469 3300039062 Bacteria 21794
80 Ga0400483_079712 3300039062 Bacteria 57268
81 Ga0400483_099432 3300039062 Bacteria 13449
82 Ga0400483_140318 3300039062 Bacteria 97528
83 Ga0400483_141638 3300039062 Bacteria 4921
84 Ga0400483_142649 3300039062 Bacteria 30786
85 Ga0400483_158230 3300039062 Bacteria 30259
86 Ga0400483_173864 3300039062 Bacteria 2571
87 Ga0400483_175050 3300039062 Bacteria 48367
88 Ga0400483_179398 3300039062 Bacteria 4704
89 Ga0400483_202654 3300039062 Bacteria 1393
90 Ga0400483_222800 3300039062 Bacteria 244239
91 Ga0400483_237212 3300039062 Bacteria 4550
92 Ga0400483_249432 3300039062 Bacteria 1281
93 Ga0400483_263439 3300039062 Bacteria 35426
94 Ga0400483_281414 3300039062 Bacteria 6737
95 Ga0400487_02017 3300039110 Bacteria 68761
96 Ga0400487_29167 3300039110 Bacteria 39851
97 Ga0400487_38770 3300039110 Bacteria 2986
98 Ga0400487_40747 3300039110 Bacteria 49036
99 Ga0400487_57625 3300039110 Bacteria 11944
100 Ga0439431_0011882 3300041997 Bacteria 1995
101 Ga0439456_003379 3300042013 Bacteria 3232
102 Ga0450890_000951 3300042127 Bacteria 4200
103 Ga0450889_001556 3300042144 Bacteria 2350
104 Ga0451577_0002715 3300042876 Bacteria 20595
105 Ga0453684_0067547 3300044712 Bacteria 4546
106 Ga0495580_0193145 3300046472 Bacteria 1404
107 Ga0495589_0001785 3300046794 Bacteria 12241
108 Ga0496121_0007157 3300048924 Bacteria 13524
109 Ga0496126_0048998 3300048929 Bacteria 3858
110 Ga0501039_0344517 3300049575 Bacteria 1171
111 2643914890 2643221581 Bacteria 3893603
112 2649123041 2648501241 Bacteria 5312320
113 2652976363 2651869818 Bacteria 5864031
114 2691329332 2690315857 Bacteria 4396207
115 2729147015 2728369097 Bacteria 4333476
116 2916182608 2916178963 Bacteria 5265078
117 2919537542 2919534386 Bacteria 4577686
118 2919544717 2919543075 Bacteria 4728703
119 2990200377 2990196909 Bacteria 4054280
120 Ga0316592_1011988
121 Ga0055524_1002787
122 Ga0065714_10066385
123 Ga0068861_100005170
124 Ga0105249_10031543
125 Ga0209256_1001082
126 Ga0207712_10243450
127 Ga0265319_1002716
128 Ga0265319_1007407
129 Ga0265318_10002169
130 Ga0316181_1044262
131 Ga0265320_10003967
132 Ga0265320_10073109
133 Ga0265316_10063495
134 Ga0307408_100228861
135 Ga0265313_10017818
136 Ga0316579_10021027
137 Ga0316576_10004237
138 Ga0316576_10017762
139 Ga0316576_10021049
140 Ga0316576_10022215
141 Ga0316576_10022762
142 Ga0316576_10029975
143 Ga0316578_10002709
144 Ga0316578_10008663
145 Ga0316578_10071329
146 Ga0307516_10003783
147 Ga0307415_100234520
148 Ga0316583_10015406
149 Ga0316587_1008589
150 Ga0316596_1002459
151 Ga0316596_1004844
152 Ga0316574_0001466
153 Ga0316574_0013996
154 Ga0316574_0016923
155 Ga0316574_0024748
156 Ga0316574_0031265
157 Ga0316574_0116473
158 Ga0316574_0118881
159 Ga0316574_0221792
160 Ga0316582_0007941
161 Ga0316582_0008369
162 Ga0316582_0044273
163 Ga0316582_0048706
164 Ga0316582_0050864
165 Ga0316584_0000520
166 Ga0316584_0084507
167 Ga0316584_0137531
168 Ga0316584_0149766
169 Ga0316584_0154126
170 Ga0316584_0164354
171 Ga0316581_0008258
172 Ga0316581_0009966
173 Ga0400484_17864
174 Ga0400490_10264
175 Ga0400490_25062
176 Ga0400490_26521
177 Ga0400490_39098
178 Ga0400490_45202
179 Ga0400491_00992
180 Ga0400491_10523
181 Ga0400491_18626
182 Ga0400491_21104
183 Ga0400491_22768
184 Ga0400485_01340
185 Ga0400485_19690
186 Ga0400488_01808
187 Ga0400488_09686
188 Ga0400488_15761
189 Ga0400488_26702
190 Ga0400488_42297
191 Ga0400488_51040
192 Ga0400486_23232
193 Ga0400486_23915
194 Ga0400486_32882
195 Ga0400483_006129
196 Ga0400483_037604
197 Ga0400483_047227
198 Ga0400483_067469
199 Ga0400483_079712
200 Ga0400483_099432
201 Ga0400483_140318
202 Ga0400483_141638
203 Ga0400483_142649
204 Ga0400483_158230
205 Ga0400483_173864
206 Ga0400483_175050
207 Ga0400483_179398
208 Ga0400483_202654
209 Ga0400483_222800
210 Ga0400483_237212
211 Ga0400483_249432
212 Ga0400483_263439
213 Ga0400483_281414
214 Ga0400487_02017
215 Ga0400487_29167
216 Ga0400487_38770
217 Ga0400487_40747
218 Ga0400487_57625
219 Ga0439431_0011882
220 Ga0439456_003379
221 Ga0450890_000951
222 Ga0450889_001556
223 Ga0451577_0002715
224 Ga0453684_0067547
225 Ga0495580_0193145
226 Ga0495589_0001785
227 Ga0496121_0007157
228 Ga0496126_0048998
229 Ga0501039_0344517
230 2643914890
231 2649123041
232 2652976363
233 2691329332
234 2729147015
235 2916182608
236 2919537542
237 2919544717
238 2990200377

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

11

325

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
6oom-assembly2.cif.gz_A-2 protein a 0.8328 5 395
6euq-assembly1.cif.gz_A mdfa(q131r/l339e) 0.8311 13 395
6kkj-assembly1.cif.gz_B crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward open conformation 0.8311 12 397
8ex6-assembly1.cif.gz_A human s1p transporter spns2 in an inward-facing open conformation (state 1*) 0.8273 11 397
6kki-assembly1.cif.gz_A crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward-occluded conformation 0.8265 12 397
ID Description Score Start End Superfamily
af_O53919_239_423_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8698 214 400 1.20.1250.20
af_O53919_239_423_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8485 214 400 1.20.1250.20
af_Q4E404_13_230_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8455 12 190 1.20.1250.20
af_P43531_29_411_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8445 11 395 1.20.1250.20
af_P37621_16_394_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8442 11 395 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A356VU25-F1-model_v4 MFS transporter 0.9696 5 274 GO:0016020
GO:0022857
AF-A0A090P4N5-F1-model_v4 deleted 0.9624 1 199
AF-A0A0B8QCI8-F1-model_v4 deleted 0.9622 14 355
AF-A0A3D4ASK2-F1-model_v4 MFS transporter 0.9603 2 357 GO:0016020
GO:0022857
AF-A0A090P4N5-F1-model_v4 deleted 0.9577 1 199

Map