F095168

General Info

Members Datasets Scaffolds Average Seq Length
117 82 102 768

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2911138879|2911140455
Length 853
Sequence RKRLQSVRHAFGSFRQRQQQLGRGIGRQINRQTRRIAGEERVNSWTAAYNEYYGSFRSFVHRYINPDSWYYPYLKKGTKIVLGLFLFLGLYVFTLNYNFLWLTGAMPSVEELKNPKLNQSSEIYSQDGVMIGKFYAENRTPIKYENIPQHLINALVATEDVRFYKHGGVDGRSVGRAVVGVLTGRSSSGGGSTITQQLAKNLFKTRRKTSTGLLTRIPLIRTIIYKSKEWLMALKLERNFTKEEILTYYFNTVDFGSNSFGLKTAARTFFNKAPDSLNVQEGAVLVGLQKATTAYNPLKNPKRSKERRDVVIGQMAKYNYLTTTQADSISELPLVTDFTPENPYSGPASYLKNAVQDQVKKWGEENGYDLYTDGLRIITTIDSRMQTYAEQATDERMKQLQRTFDNHWRGRNPWTDEDGNEIPGFIDSVARRTERYKSLARRFPNDPDSINYYMKVRKYKMRVFSWNSKKGYDSTNMTPYDSIAYYKHFLQSGMVAMDPHTGYVRAWVGGIDYDYFKYDHVKQGKRQPGSTFKPFVYTSVIDDTLLNLSPCDRIQDKPFRKEYRENGEDKVWEPRNSTGYYSYSNLTLRRAMARSVNSITAHLTDEVGPERVAQYAHRMGIKSSLQAVPSIGLGSSDVSLYELVGAYCTFVNDGEAIDPIIVQRIEDREGKEIESFTPTRQRAISEETAFLMRYMLQGGLQESGGTSQALWSFDLFKNKNEMGGKTGTTSNNSDGWFVGVSENLVVGAWVGGDDRSIHFRSTDMGEGAKTALPLVGTFLEKVYKDPKFKALQGPFHKPTIPITKNYLDCGYSDDEVESESDSTNVDAVGDSTLAPVIPGLDPTAPPDTTNRPQ

Samples

Sample ID Description Type Environment
1 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
2 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
3 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
4 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
5 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
6 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
7 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
8 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
9 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
10 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
11 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
12 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
13 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
14 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
15 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
16 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
17 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
18 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
19 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
20 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
21 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
22 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
23 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
46 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
47 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
48 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
49 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
50 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
51 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
52 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
58 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
59 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
62 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
63 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
64 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
65 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
66 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
67 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
68 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
69 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
70 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
71 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
72 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
73 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
74 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
75 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
76 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
77 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
78 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
79 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
80 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
81 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
82 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.32
Metatranscriptomes 0
Isolates 13.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.66
Nodule 0
Rhizoplane 0.85
Rhizosphere 52.99
Stem 0
Stem Tuber 0
Unclassified 26.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10004330 3300003316 Bacteria 6017
2 rootH1_10008875 3300003316 Bacteria 24008
3 rootH1_10038740 3300003316 Bacteria 12495
4 rootH1_10038740 3300003323 Bacteria 4304
5 rootH1_10047305 3300003316 Bacteria 5827
6 rootH2_10001922 3300003320 Bacteria 77648
7 rootH2_10004415 3300003320 Bacteria 27098
8 rootL2_10004009 3300003322 Bacteria 8037
9 rootL2_10019422 3300003322 Bacteria 22736
10 rootL2_10039681 3300003322 Bacteria 7823
11 rootL2_10226167 3300003322 Bacteria 3855
12 rootH1_10018794 3300003323 Bacteria 7284
13 rootH1_10029002 3300003323 Bacteria 8274
14 rootH1_10037393 3300003323 Bacteria 8939
15 rootH1_10151272 3300003323 Bacteria 5745
16 Ga0055535_1003270 3300003761 Bacteria 4712
17 Ga0055531_10000235 3300003794 Bacteria 60560
18 Ga0055531_10000237 3300003794 Bacteria 60479
19 Ga0065165_1000422 3300005262 Bacteria 66792
20 Ga0065165_1002091 3300005262 Bacteria 18285
21 Ga0065715_10089207 3300005293 Bacteria 12564
22 Ga0070680_100001197 3300005336 Bacteria 18706
23 Ga0070681_10021132 3300005458 Bacteria 6522
24 Ga0070679_100001998 3300005530 Bacteria 18314
25 Ga0075366_10012863 3300006195 Bacteria 4758
26 Ga0105240_10000722 3300009093 Bacteria 60400
27 Ga0111539_10022172 3300009094 Bacteria 7806
28 Ga0105243_10000025 3300009148 Bacteria 193732
29 Ga0105241_10077858 3300009174 Bacteria 2590
30 Ga0105237_10022050 3300009545 Bacteria 6537
31 Ga0105237_10075269 3300009545 Bacteria 3368
32 Ga0105239_10001688 3300010375 Bacteria 29112
33 Ga0105239_10003983 3300010375 Bacteria 17892
34 Ga0105239_10005819 3300010375 Bacteria 14375
35 Ga0209258_100068 3300025242 Bacteria 286288
36 Ga0209148_1000343 3300025254 Bacteria 61260
37 Ga0209676_1001359 3300025292 Bacteria 24135
38 Ga0209050_1001667 3300025298 Bacteria 22432
39 Ga0209257_1000023 3300025304 Bacteria 753019
40 Ga0209257_1000025 3300025304 Bacteria 724838
41 Ga0207654_10003769 3300025911 Bacteria 7638
42 Ga0207707_10009264 3300025912 Bacteria 8542
43 Ga0207695_10000013 3300025913 Bacteria 821265
44 Ga0207695_10016551 3300025913 Bacteria 8620
45 Ga0207671_10015095 3300025914 Bacteria 6070
46 Ga0207671_10038694 3300025914 Bacteria 3534
47 Ga0207671_10039548 3300025914 Bacteria 3492
48 Ga0207660_10003635 3300025917 Bacteria 10051
49 Ga0207652_10013717 3300025921 Bacteria 6553
50 Ga0207709_10000003 3300025935 Bacteria 1050072
51 Ga0265323_10000379 3300028653 Bacteria 25733
52 Ga0307515_10000778 3300028794 Bacteria 73451
53 Ga0307515_10003029 3300028794 Bacteria 35637
54 Ga0307515_10003343 3300028794 Bacteria 33898
55 Ga0307515_10017804 3300028794 Bacteria 12916
56 Ga0316176_1009249 3300030732 Bacteria 17896
57 Ga0316183_1174733 3300030742 Bacteria 32145
58 Ga0316181_1092606 3300030744 Bacteria 18862
59 Ga0265316_10000445 3300031344 Bacteria 47073
60 Ga0265316_10000695 3300031344 Bacteria 37478
61 Ga0307509_10026790 3300031507 Bacteria 6424
62 Ga0307408_100000151 3300031548 Bacteria 77679
63 Ga0307408_100000374 3300031548 Bacteria 40838
64 Ga0307408_100001114 3300031548 Bacteria 20475
65 Ga0307408_100025264 3300031548 Bacteria 4067
66 Ga0316576_10015591 3300031727 Bacteria 5105
67 Ga0307405_10014202 3300031731 Bacteria 4274
68 Ga0307412_10008189 3300031911 Bacteria 5959
69 Ga0307416_100073420 3300032002 Unclassified 2852
70 Ga0307414_10002747 3300032004 Bacteria 9264
71 Ga0307414_10049646 3300032004 Bacteria 2902
72 Ga0307411_10002789 3300032005 Bacteria 7864
73 Ga0451837_0447978 3300041494 Bacteria 3742
74 Ga0453684_0000912 3300044712 Bacteria 98180
75 Ga0453684_0002497 3300044712 Bacteria 44444
76 Ga0453684_0005918 3300044712 Bacteria 23717
77 Ga0495638_0000013 3300046460 Bacteria 430133
78 Ga0495648_0003373 3300046524 Bacteria 14063
79 Ga0495633_0000081 3300046558 Bacteria 125903
80 Ga0495668_0000003 3300046616 Bacteria 695023
81 Ga0495625_0000846 3300046660 Bacteria 41815
82 Ga0495625_0001822 3300046660 Bacteria 24395
83 Ga0495686_0000367 3300047472 Bacteria 73112
84 Ga0496101_0038654 3300048904 Bacteria 3390
85 Ga0496116_0004898 3300048919 Bacteria 12621
86 Ga0496117_0002709 3300048920 Bacteria 21851
87 Ga0496122_0002605 3300048925 Bacteria 25277
88 Ga0496123_0010356 3300048926 Bacteria 8254
89 Ga0496124_0039078 3300048927 Bacteria 4116
90 Ga0496126_0011367 3300048929 Bacteria 9227
91 Ga0501040_0027285 3300049576 Unclassified 3844
92 nmdc:mga0k408_175_c1 3300050493 Bacteria 32183
93 Ga0500644_0000475 3300053088 Bacteria 17705
94 Ga0500604_0001765 3300053151 Bacteria 6050
95 Ga0500616_0000013 3300053153 Bacteria 674172
96 Ga0500616_0002819 3300053153 Bacteria 13977
97 Ga0500616_0015199 3300053153 Bacteria 4407
98 Ga0500622_0000010 3300053156 Bacteria 398804
99 Ga0500622_0000044 3300053156 Bacteria 158778
100 Ga0500622_0014114 3300053156 Bacteria 4293
101 Ga0500624_000533 3300053157 Bacteria 10784
102 Ga0500633_0009130 3300053160 Bacteria 2592

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053160 Ga0500633_0009130 Ga0500633_0009130_437_2563 638
2 3300005336 Ga0070680_100001197 Ga0070680_1000011975 677
3 3300005458 Ga0070681_10021132 Ga0070681_100211322 677
4 3300005530 Ga0070679_100001998 Ga0070679_1000019986 677
5 3300025911 Ga0207654_10003769 Ga0207654_100037694 677
6 3300025912 Ga0207707_10009264 Ga0207707_100092646 677
7 3300025913 Ga0207695_10000013 Ga0207695_10000013125 677
8 3300025914 Ga0207671_10015095 Ga0207671_100150954 677
9 3300025914 Ga0207671_10038694 Ga0207671_100386942 677
10 3300025917 Ga0207660_10003635 Ga0207660_100036358 677
11 3300025921 Ga0207652_10013717 Ga0207652_100137172 677
12 3300046558 Ga0495633_0000081 Ga0495633_0000081_106327_108534 677
13 3300025914 Ga0207671_10039548 Ga0207671_100395481 678
14 3300044712 Ga0453684_0000912 Ga0453684_0000912_47362_49605 681
15 3300009093 Ga0105240_10000722 Ga0105240_1000072239 685
16 3300009174 Ga0105241_10077858 Ga0105241_100778582 685
17 3300009545 Ga0105237_10022050 Ga0105237_100220504 685
18 3300009545 Ga0105237_10075269 Ga0105237_100752692 685
19 3300010375 Ga0105239_10003983 Ga0105239_100039834 685
20 3300010375 Ga0105239_10005819 Ga0105239_1000581911 685
21 3300025913 Ga0207695_10016551 Ga0207695_100165512 685
22 3300047472 Ga0495686_0000367 Ga0495686_0000367_25888_28092 685
23 3300010375 Ga0105239_10001688 Ga0105239_100016885 686
24 3300046524 Ga0495648_0003373 Ga0495648_0003373_4038_6248 686
25 3300046616 Ga0495668_0000003 Ga0495668_0000003_665125_667335 686
26 3300046660 Ga0495625_0000846 Ga0495625_0000846_18942_21149 686
27 3300046660 Ga0495625_0001822 Ga0495625_0001822_20169_22379 686
28 3300050493 nmdc:mga0k408_175_c1 nmdc:mga0k408_175_c1_29909_32116 686
29 3300053157 Ga0500624_000533 Ga0500624_000533_3235_5445 687
30 3300048926 Ga0496123_0010356 Ga0496123_0010356_5644_7905 690
31 3300048927 Ga0496124_0039078 Ga0496124_0039078_868_3129 690
32 3300031548 Ga0307408_100000151 Ga0307408_1000001512 692
33 iso_pu_bacteria 2904780799 2904781097 693
34 iso_pu_bacteria 2919177583 2919178699 693
35 3300031548 Ga0307408_100001114 Ga0307408_10000111414 696
36 3300031911 Ga0307412_10008189 Ga0307412_100081892 696
37 3300031548 Ga0307408_100025264 Ga0307408_1000252642 697
38 3300031344 Ga0265316_10000695 Ga0265316_1000069526 698
39 3300032005 Ga0307411_10002789 Ga0307411_100027897 699
40 3300028653 Ga0265323_10000379 Ga0265323_1000037913 700
41 3300031344 Ga0265316_10000445 Ga0265316_1000044520 700
42 3300028794 Ga0307515_10000778 Ga0307515_1000077827 706
43 3300053088 Ga0500644_0000475 Ga0500644_0000475_1344_3704 708
44 3300031727 Ga0316576_10015591 Ga0316576_100155912 710
45 3300049576 Ga0501040_0027285 Ga0501040_0027285_1263_3602 710
46 3300003794 Ga0055531_10000237 Ga0055531_1000023740 711
47 3300009148 Ga0105243_10000025 Ga0105243_10000025104 711
48 3300025304 Ga0209257_1000025 Ga0209257_1000025546 711
49 3300025935 Ga0207709_10000003 Ga0207709_10000003821 711
50 3300044712 Ga0453684_0005918 Ga0453684_0005918_171_2513 711
51 iso_pu_bacteria 2910245624 2910245924 711
52 iso_pu_bacteria 2842903701 2842906800 712
53 iso_pu_bacteria 2852623160 2852623443 712
54 3300005293 Ga0065715_10089207 Ga0065715_100892072 713
55 3300031548 Ga0307408_100000374 Ga0307408_10000037411 713
56 3300003761 Ga0055535_1003270 Ga0055535_10032702 714
57 3300025242 Ga0209258_100068 Ga0209258_10006873 714
58 3300025254 Ga0209148_1000343 Ga0209148_10003439 714
59 3300028794 Ga0307515_10017804 Ga0307515_100178045 714
60 3300048904 Ga0496101_0038654 Ga0496101_0038654_349_2751 714
61 3300048929 Ga0496126_0011367 Ga0496126_0011367_5540_7942 714
62 3300003316 rootH1_10038740 rootH1_100387408 715
63 3300028794 Ga0307515_10003029 Ga0307515_1000302913 715
64 3300006195 Ga0075366_10012863 Ga0075366_100128632 716
65 3300030732 Ga0316176_1009249 Ga0316176_100924917 716
66 3300030742 Ga0316183_1174733 Ga0316183_117473321 716
67 3300030744 Ga0316181_1092606 Ga0316181_10926067 716
68 3300003320 rootH2_10004415 rootH2_1000441520 717
69 3300044712 Ga0453684_0002497 Ga0453684_0002497_144_2429 717
70 3300053156 Ga0500622_0014114 Ga0500622_0014114_43_2430 718
71 iso_pu_bacteria 2896317667 2896318071 718
72 3300041494 Ga0451837_0447978 Ga0451837_0447978_921_3233 719
73 iso_pu_bacteria 2721755487 2722729437 719
74 3300003316 rootH1_10047305 rootH1_100473054 720
75 iso_pu_bacteria 2884634485 2884636027 720
76 iso_pu_bacteria 2919692658 2919693937 720
77 3300032004 Ga0307414_10002747 Ga0307414_100027472 724
78 3300032004 Ga0307414_10049646 Ga0307414_100496461 724
79 3300048919 Ga0496116_0004898 Ga0496116_0004898_3616_6012 724
80 3300048920 Ga0496117_0002709 Ga0496117_0002709_1926_4322 724
81 3300048925 Ga0496122_0002605 Ga0496122_0002605_12157_14553 724
82 iso_pu_bacteria 2739367866 2740032357 725
83 3300053153 Ga0500616_0002819 Ga0500616_0002819_11394_13763 726
84 iso_pu_bacteria 2902048731 2902051437 727
85 3300003322 rootL2_10039681 rootL2_100396817 728
86 iso_pu_bacteria 2821136567 2821140208 728
87 iso_pu_bacteria 2739367866 2740031270 730
88 iso_pu_bacteria 8055588893 8055589025 731
89 3300003794 Ga0055531_10000235 Ga0055531_1000023554 732
90 3300025304 Ga0209257_1000023 Ga0209257_1000023165 739
91 3300003323 rootH1_10151272 rootH1_101512725 743
92 3300009094 Ga0111539_10022172 Ga0111539_100221721 745
93 3300005262 Ga0065165_1000422 Ga0065165_10004229 747
94 3300025292 Ga0209676_1001359 Ga0209676_100135922 747
95 3300031731 Ga0307405_10014202 Ga0307405_100142021 747
96 3300031507 Ga0307509_10026790 Ga0307509_100267903 748
97 3300032002 Ga0307416_100073420 Ga0307416_1000734201 748
98 iso_pu_bacteria 2522125168 2522549832 749
99 iso_pu_bacteria 2911138879 2911140455 759
100 3300003323 rootH1_10037393 rootH1_100373935 795
101 3300053156 Ga0500622_0000044 Ga0500622_0000044_52451_54931 800
102 3300053151 Ga0500604_0001765 Ga0500604_0001765_3364_5844 801
103 3300053156 Ga0500622_0000010 Ga0500622_0000010_343913_346393 803
104 3300003322 rootL2_10019422 rootL2_1001942214 806
105 3300025298 Ga0209050_1001667 Ga0209050_100166718 806
106 3300028794 Ga0307515_10003343 Ga0307515_1000334316 806
107 3300046460 Ga0495638_0000013 Ga0495638_0000013_123794_126262 806
108 3300053153 Ga0500616_0000013 Ga0500616_0000013_591322_593790 806
109 3300053153 Ga0500616_0015199 Ga0500616_0015199_1766_4240 808
110 3300005262 Ga0065165_1002091 Ga0065165_10020913 811
111 3300003316 rootH1_10008875 rootH1_100088758 812
112 3300003322 rootL2_10226167 rootL2_102261672 812
113 3300003323 rootH1_10029002 rootH1_100290023 812
114 3300003316 rootH1_10004330 rootH1_100043303 813
115 3300003320 rootH2_10001922 rootH2_1000192221 813
116 3300003322 rootL2_10004009 rootL2_100040095 813
117 3300003323 rootH1_10018794 rootH1_100187944 813

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00912

Transgly

Transglycosylase

127

316

0.94

PF00905

Transpeptidase

Penicillin binding protein transpeptidase domain

492

750

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
6yn0-assembly1.cif.gz_A structure of e. coli pbp1b with a ftsn peptide activating transglycosylase activity 0.8865 93 715
5hl9-assembly1.cif.gz_A e. coli pbp1b in complex with acyl-ampicillin and moenomycin 0.8788 96 715
3vma-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8745 93 715
5fgz-assembly1.cif.gz_A e. coli pbp1b in complex with fpi-1465 0.8733 94 735
5hla-assembly1.cif.gz_A e. coli pbp1b in complex with acyl-cephalexin and moenomycin 0.8658 96 715
ID Description Score Start End Superfamily
5hlaA04 Mainly Alpha;Orthogonal Bundle;Penicillin binding protein transpeptidase fold;Biosynthetic peptidoglycan transglycosylase-like 0.8951 104 280 1.10.3810.10
4oonA02 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8851 433 735 3.40.710.10
3ue1A01 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8793 294 735 3.40.710.10
3fwmA02 Mainly Alpha;Orthogonal Bundle;Penicillin binding protein transpeptidase fold;Biosynthetic peptidoglycan transglycosylase-like 0.8715 104 261 1.10.3810.10
5hldA03 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8656 296 715 3.40.710.10
ID Description Score Start End GO Terms
AF-A0A645BFS0-F1-model_v4 peptidoglycan glycosyltransferase (EC 2.4.99.28) 0.9473 420 745 GO:0008360
GO:0008658
GO:0008955
GO:0009252
GO:0016020
GO:0030288
GO:0071555
AF-A0A7Z9VM27-F1-model_v4 Penicillin-binding protein transpeptidase domain-containing protein 0.9429 433 719 GO:0008658
GO:0008955
GO:0009252
GO:0030288
AF-A0A645ACS0-F1-model_v4 peptidoglycan glycosyltransferase (EC 2.4.99.28) 0.9409 339 737 GO:0008360
GO:0008658
GO:0008955
GO:0009252
GO:0016020
GO:0030288
GO:0071555
AF-A0A641W2K7-F1-model_v4 deleted 0.9354 470 736
AF-A0A7Y1TBF8-F1-model_v4 peptidoglycan glycosyltransferase (EC 2.4.99.28) 0.9323 432 736 GO:0008360
GO:0008658
GO:0008955
GO:0009252
GO:0016020
GO:0030288
GO:0071555

Feature Viewer

pLDDT pTM Quality
84.48 0.75 High
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Predicted Structure (AlphaFold2)

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