F094559

General Info

Members Datasets Scaffolds Average Seq Length
117 82 117 289

Family's Representative Sequence

Representative Sequence 3300048918|Ga0496115_0000049|Ga0496115_0000049_35580_36539
Length 319
Sequence MCYTLSIKGKIQTRMKQRLSVRAIINEDGKALLLKRSNGRDTILGKYELPGGKLAYGEQPEDALRRYLHDDAGLHVQSAQLFDAVTYIDHDDRAIQYGVIAYLVTLAPQRHPMKLSGNYSKYKWHSMSSAQQSELTDLTQLLLGIIQQEQLTDKALAKVQQNDEKNTSSDSITIYSDGGSRGNPGPSAAGFVVLNNQQQVISEGGEYLGITTNNQAEYQGVRIGLEEAQKLGFKKVDFKLDSMLVVNQMKGYYKIKNRELWPIHERIRLLMTKFDRVTFTHVPRQFNQLADGMVNKTLDAHEREKSTNTQKGNDIIGDR

Samples

Sample ID Description Type Environment
1 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
8 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
9 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
10 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
11 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
14 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
15 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
16 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
17 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
19 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
22 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
23 3300009984 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG Metagenome Rhizosphere
24 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
25 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
26 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
27 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
28 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
36 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
37 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
38 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
39 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
40 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
41 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
42 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
43 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
44 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
45 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
46 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
47 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
48 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
49 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
50 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
51 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
52 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
53 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
54 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
55 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
56 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
57 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
58 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
59 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
60 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
61 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
65 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
66 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
67 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
68 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
69 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
70 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
71 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
72 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
73 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
74 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
75 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
76 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
77 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
78 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
79 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
80 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
81 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
82 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 33.33
Nodule 0
Rhizoplane 2.56
Rhizosphere 59.83
Stem 0
Stem Tuber 0
Unclassified 4.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MBSR1b_contig_12311529 2162886012 Bacteria 1077
2 rootH1_10016269 3300003316 Bacteria 16679
3 rootH2_10004334 3300003320 Bacteria 85448
4 rootL2_10315149 3300003322 Bacteria 1243
5 rootH1_10265400 3300003323 Unclassified 1257
6 Ga0065715_10089662 3300005293 Bacteria 9033
7 Ga0068855_100000002 3300005563 Bacteria 616881
8 Ga0068855_100002092 3300005563 Bacteria 24707
9 Ga0068855_100031493 3300005563 Bacteria 6333
10 Ga0070664_100081248 3300005564 Bacteria 2793
11 Ga0068857_100002101 3300005577 Bacteria 16180
12 Ga0068857_100091294 3300005577 Unclassified 2726
13 Ga0068854_100025357 3300005578 Bacteria 4068
14 Ga0081455_10000006 3300005937 Bacteria 323066
15 Ga0075365_10000011 3300006038 Bacteria 85296
16 Ga0075365_10000752 3300006038 Bacteria 13154
17 Ga0075365_10083654 3300006038 Bacteria 2165
18 Ga0075365_10108735 3300006038 Bacteria 1904
19 Ga0075368_10000995 3300006042 Bacteria 8864
20 Ga0075363_100001478 3300006048 Bacteria 8944
21 Ga0075364_10000211 3300006051 Bacteria 27491
22 Ga0075364_10002599 3300006051 Bacteria 10130
23 Ga0075369_10009656 3300006186 Bacteria 3754
24 Ga0097621_100000001 3300006237 Bacteria 632268
25 Ga0075370_10061144 3300006353 Bacteria 2146
26 Ga0068871_100000001 3300006358 Bacteria 215987
27 Ga0105240_10000030 3300009093 Bacteria 321312
28 Ga0105240_10010910 3300009093 Bacteria 12732
29 Ga0105240_10012861 3300009093 Bacteria 11531
30 Ga0105237_10000001 3300009545 Bacteria 1009213
31 Ga0105032_100009 3300009979 Bacteria 86569
32 Ga0105032_100012 3300009979 Bacteria 73994
33 Ga0105029_100030 3300009984 Bacteria 6854
34 Ga0105028_100348 3300009993 Bacteria 4967
35 Ga0105028_100362 3300009993 Bacteria 4847
36 Ga0105246_10569520 3300011119 Bacteria 974
37 Ga0157369_10000003 3300013105 Bacteria 507337
38 Ga0157369_10005134 3300013105 Bacteria 15326
39 Ga0157372_10000007 3300013307 Bacteria 340690
40 Ga0157372_10000096 3300013307 Bacteria 91282
41 Ga0157372_10394644 3300013307 Bacteria 1612
42 Ga0207695_10000009 3300025913 Bacteria 1034276
43 Ga0207695_10001769 3300025913 Bacteria 34119
44 Ga0207695_10010829 3300025913 Bacteria 11111
45 Ga0207671_10000003 3300025914 Bacteria 1065461
46 Ga0207657_10002368 3300025919 Bacteria 20388
47 Ga0207679_10061486 3300025945 Bacteria 2796
48 Ga0207667_10000005 3300025949 Bacteria 715503
49 Ga0207667_10000048 3300025949 Bacteria 238293
50 Ga0207667_10009157 3300025949 Bacteria 11694
51 Ga0207640_10021859 3300025981 Bacteria 3819
52 Ga0207640_10294541 3300025981 Bacteria 1281
53 Ga0207674_10026843 3300026116 Bacteria 6108
54 Ga0207674_10156839 3300026116 Unclassified 2231
55 Ga0209813_10000157 3300027866 Bacteria 23004
56 Ga0209974_10000702 3300027876 Bacteria 11410
57 Ga0316183_1006021 3300030742 Bacteria 1629
58 Ga0316183_1025028 3300030742 Bacteria 6437
59 Ga0316181_1041587 3300030744 Bacteria 1379
60 Ga0316181_1081804 3300030744 Bacteria 1156
61 Ga0316181_1123581 3300030744 Bacteria 76132
62 Ga0316182_1088720 3300030745 Bacteria 6525
63 Ga0316182_1148372 3300030745 Bacteria 2845
64 Ga0316182_1157866 3300030745 Bacteria 8482
65 Ga0307516_10000003 3300031730 Bacteria 459377
66 Ga0307406_10000001 3300031901 Bacteria 638191
67 Ga0307412_10013396 3300031911 Bacteria 4808
68 Ga0307411_10158429 3300032005 Bacteria 1692
69 Ga0395899_0032149 3300037312 Bacteria 3942
70 Ga0439438_002547 3300041405 Bacteria 7726
71 Ga0439447_003307 3300041407 Bacteria 5737
72 Ga0439461_0001284 3300041410 Bacteria 3847
73 Ga0439466_0015096 3300041411 Bacteria 2808
74 Ga0439442_001283 3300042002 Bacteria 5001
75 Ga0439446_0000883 3300042156 Bacteria 6440
76 Ga0439434_0000948 3300042435 Bacteria 8353
77 Ga0466972_0040364 3300044658 Bacteria 2274
78 Ga0466965_0000828 3300044683 Bacteria 11698
79 Ga0466963_0379414 3300044694 Bacteria 996
80 Ga0495638_0000491 3300046460 Bacteria 47279
81 Ga0495660_0000114 3300046810 Bacteria 86218
82 Ga0495686_0036993 3300047472 Bacteria 3130
83 Ga0496109_0353639 3300048912 Bacteria 1388
84 Ga0496110_0496537 3300048913 Bacteria 1111
85 Ga0496115_0000049 3300048918 Bacteria 109919
86 Ga0501034_0001207 3300049571 Bacteria 35479
87 Ga0501037_0000001 3300049573 Bacteria 753276
88 Ga0501038_0265142 3300049574 Bacteria 1356
89 Ga0501242_008002 3300049674 Bacteria 1230
90 nmdc:mga00v17_316_c1 3300050491 Bacteria 27522
91 nmdc:mga0yw44_126_c1 3300050492 Bacteria 26586
92 nmdc:mga0yw44_216842_c1 3300050492 Bacteria 1267
93 nmdc:mga0yw44_24269_c1 3300050492 Bacteria 3429
94 nmdc:mga0yw44_3_c1 3300050492 Bacteria 561857
95 nmdc:mga0yw44_83816_c1 3300050492 Bacteria 2003
96 nmdc:mga06z11_141_c1 3300050494 Bacteria 28597
97 nmdc:mga04h51_616_c1 3300050495 Bacteria 8413
98 nmdc:mga07m45_8805_c1 3300050496 Bacteria 3387
99 nmdc:mga0sz30_2062_c2 3300050516 Bacteria 4480
100 Ga0500643_012965 3300053087 Bacteria 2966
101 Ga0500643_019624 3300053087 Bacteria 2222
102 Ga0500646_0000010 3300053090 Bacteria 91525
103 Ga0500583_0000444 3300053092 Bacteria 13051
104 Ga0500583_0021533 3300053092 Bacteria 2683
105 Ga0500651_0000043 3300053093 Bacteria 86502
106 Ga0500651_0000072 3300053093 Bacteria 65983
107 Ga0500641_0000001 3300053096 Bacteria 1115973
108 Ga0500650_0003456 3300053098 Bacteria 5499
109 Ga0500556_0018057 3300053104 Unclassified 2220
110 Ga0500594_0000475 3300053118 Bacteria 8814
111 Ga0500652_000001 3300053131 Bacteria 946868
112 Ga0500655_000147 3300053133 Bacteria 17635
113 Ga0500577_0001504 3300053142 Bacteria 5947
114 Ga0500577_0005606 3300053142 Bacteria 3399
115 Ga0500577_0010449 3300053142 Bacteria 2733
116 Ga0500577_0102967 3300053142 Bacteria 1169
117 Ga0500616_0000067 3300053153 Bacteria 236311

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044683 Ga0466965_0000828 Ga0466965_0000828_6065_6943 258
2 3300044658 Ga0466972_0040364 Ga0466972_0040364_303_1181 264
3 3300005577 Ga0068857_100091294 Ga0068857_1000912944 266
4 3300026116 Ga0207674_10156839 Ga0207674_101568392 266
5 3300005577 Ga0068857_100002101 Ga0068857_1000021017 268
6 3300026116 Ga0207674_10026843 Ga0207674_100268433 268
7 3300049571 Ga0501034_0001207 Ga0501034_0001207_1511_2383 273
8 3300013105 Ga0157369_10000003 Ga0157369_1000000313 274
9 3300005563 Ga0068855_100000002 Ga0068855_100000002670 281
10 3300025949 Ga0207667_10000005 Ga0207667_10000005779 281
11 3300044694 Ga0466963_0379414 Ga0466963_0379414_94_948 282
12 3300047472 Ga0495686_0036993 Ga0495686_0036993_105_974 283
13 3300005564 Ga0070664_100081248 Ga0070664_1000812484 284
14 3300006237 Ga0097621_100000001 Ga0097621_100000001185 284
15 3300006358 Ga0068871_100000001 Ga0068871_10000000139 284
16 3300025945 Ga0207679_10061486 Ga0207679_100614862 284
17 3300005937 Ga0081455_10000006 Ga0081455_10000006171 285
18 3300032005 Ga0307411_10158429 Ga0307411_101584291 285
19 3300005563 Ga0068855_100002092 Ga0068855_10000209212 286
20 3300009093 Ga0105240_10012861 Ga0105240_100128615 286
21 3300009993 Ga0105028_100362 Ga0105028_1003624 286
22 3300025913 Ga0207695_10010829 Ga0207695_100108295 286
23 3300025949 Ga0207667_10000048 Ga0207667_10000048266 286
24 3300031730 Ga0307516_10000003 Ga0307516_10000003246 286
25 3300006038 Ga0075365_10000011 Ga0075365_1000001189 287
26 3300006051 Ga0075364_10000211 Ga0075364_1000021126 287
27 3300050491 nmdc:mga00v17_316_c1 nmdc:mga00v17_316_c1_16310_17185 287
28 3300050492 nmdc:mga0yw44_3_c1 nmdc:mga0yw44_3_c1_550645_551520 287
29 3300013307 Ga0157372_10394644 Ga0157372_103946442 288
30 3300025981 Ga0207640_10294541 Ga0207640_102945412 288
31 3300027876 Ga0209974_10000702 Ga0209974_1000070210 288
32 3300006038 Ga0075365_10108735 Ga0075365_101087351 289
33 3300006353 Ga0075370_10061144 Ga0075370_100611444 289
34 3300009093 Ga0105240_10010910 Ga0105240_1001091019 289
35 3300009993 Ga0105028_100348 Ga0105028_1003483 289
36 3300025913 Ga0207695_10001769 Ga0207695_1000176917 289
37 3300050492 nmdc:mga0yw44_83816_c1 nmdc:mga0yw44_83816_c1_204_1073 289
38 3300050496 nmdc:mga07m45_8805_c1 nmdc:mga07m45_8805_c1_2327_3196 289
39 3300003322 rootL2_10315149 rootL2_103151492 290
40 3300003323 rootH1_10265400 rootH1_102654001 290
41 3300005563 Ga0068855_100031493 Ga0068855_1000314934 290
42 3300005578 Ga0068854_100025357 Ga0068854_1000253574 290
43 3300009984 Ga0105029_100030 Ga0105029_1000306 290
44 3300011119 Ga0105246_10569520 Ga0105246_105695201 290
45 3300013105 Ga0157369_10005134 Ga0157369_1000513420 290
46 3300025949 Ga0207667_10009157 Ga0207667_1000915714 290
47 3300025981 Ga0207640_10021859 Ga0207640_100218594 290
48 3300041405 Ga0439438_002547 Ga0439438_002547_922_1797 290
49 3300041407 Ga0439447_003307 Ga0439447_003307_1849_2724 290
50 3300041411 Ga0439466_0015096 Ga0439466_0015096_1881_2756 290
51 3300042002 Ga0439442_001283 Ga0439442_001283_1603_2478 290
52 3300042156 Ga0439446_0000883 Ga0439446_0000883_1667_2542 290
53 3300042435 Ga0439434_0000948 Ga0439434_0000948_4960_5835 290
54 3300046810 Ga0495660_0000114 Ga0495660_0000114_68744_69616 290
55 3300049573 Ga0501037_0000001 Ga0501037_0000001_666886_667758 290
56 3300049574 Ga0501038_0265142 Ga0501038_0265142_235_1107 290
57 3300049674 Ga0501242_008002 Ga0501242_008002_226_1098 290
58 3300053090 Ga0500646_0000010 Ga0500646_0000010_74047_74919 290
59 3300053092 Ga0500583_0000444 Ga0500583_0000444_5055_5927 290
60 3300053093 Ga0500651_0000072 Ga0500651_0000072_20762_21637 290
61 3300053096 Ga0500641_0000001 Ga0500641_0000001_678557_679429 290
62 3300053098 Ga0500650_0003456 Ga0500650_0003456_2693_3565 290
63 3300053131 Ga0500652_000001 Ga0500652_000001_801999_802871 290
64 3300053142 Ga0500577_0010449 Ga0500577_0010449_415_1290 290
65 3300053142 Ga0500577_0102967 Ga0500577_0102967_58_933 290
66 3300053153 Ga0500616_0000067 Ga0500616_0000067_186938_187810 290
67 3300009979 Ga0105032_100012 Ga0105032_10001267 291
68 3300013307 Ga0157372_10000096 Ga0157372_1000009615 291
69 3300037312 Ga0395899_0032149 Ga0395899_0032149_1665_2540 291
70 3300053142 Ga0500577_0005606 Ga0500577_0005606_2117_2992 291
71 3300003320 rootH2_10004334 rootH2_1000433413 292
72 3300006038 Ga0075365_10000752 Ga0075365_100007529 292
73 3300006038 Ga0075365_10083654 Ga0075365_100836542 292
74 3300006042 Ga0075368_10000995 Ga0075368_100009955 292
75 3300006048 Ga0075363_100001478 Ga0075363_1000014785 292
76 3300006051 Ga0075364_10002599 Ga0075364_100025999 292
77 3300006186 Ga0075369_10009656 Ga0075369_100096562 292
78 3300009093 Ga0105240_10000030 Ga0105240_10000030361 292
79 3300009545 Ga0105237_10000001 Ga0105237_1000000114 292
80 3300009979 Ga0105032_100009 Ga0105032_10000983 292
81 3300013307 Ga0157372_10000007 Ga0157372_1000000714 292
82 3300025913 Ga0207695_10000009 Ga0207695_1000000914 292
83 3300025914 Ga0207671_10000003 Ga0207671_1000000314 292
84 3300025919 Ga0207657_10002368 Ga0207657_1000236812 292
85 3300027866 Ga0209813_10000157 Ga0209813_1000015714 292
86 3300030742 Ga0316183_1006021 Ga0316183_10060213 292
87 3300030742 Ga0316183_1025028 Ga0316183_10250283 292
88 3300030744 Ga0316181_1041587 Ga0316181_10415872 292
89 3300030744 Ga0316181_1081804 Ga0316181_10818042 292
90 3300030744 Ga0316181_1123581 Ga0316181_11235816 292
91 3300030745 Ga0316182_1088720 Ga0316182_10887206 292
92 3300030745 Ga0316182_1148372 Ga0316182_11483726 292
93 3300030745 Ga0316182_1157866 Ga0316182_115786612 292
94 3300041410 Ga0439461_0001284 Ga0439461_0001284_227_1105 292
95 3300050492 nmdc:mga0yw44_126_c1 nmdc:mga0yw44_126_c1_9135_10013 292
96 3300050492 nmdc:mga0yw44_216842_c1 nmdc:mga0yw44_216842_c1_136_1014 292
97 3300050492 nmdc:mga0yw44_24269_c1 nmdc:mga0yw44_24269_c1_2458_3336 292
98 3300050494 nmdc:mga06z11_141_c1 nmdc:mga06z11_141_c1_880_1758 292
99 3300050495 nmdc:mga04h51_616_c1 nmdc:mga04h51_616_c1_4284_5162 292
100 3300050516 nmdc:mga0sz30_2062_c2 nmdc:mga0sz30_2062_c2_2384_3262 292
101 3300053087 Ga0500643_012965 Ga0500643_012965_936_1814 292
102 3300053092 Ga0500583_0021533 Ga0500583_0021533_1680_2558 292
103 3300053093 Ga0500651_0000043 Ga0500651_0000043_21892_22770 292
104 3300053118 Ga0500594_0000475 Ga0500594_0000475_7730_8608 292
105 3300053142 Ga0500577_0001504 Ga0500577_0001504_2220_3098 292
106 2162886012 MBSR1b_contig_12311529 MBSR1b_0990.00004440 294
107 3300003316 rootH1_10016269 rootH1_1001626913 294
108 3300005293 Ga0065715_10089662 Ga0065715_100896623 294
109 3300031901 Ga0307406_10000001 Ga0307406_10000001694 294
110 3300031911 Ga0307412_10013396 Ga0307412_100133965 294
111 3300046460 Ga0495638_0000491 Ga0495638_0000491_28580_29473 294
112 3300048912 Ga0496109_0353639 Ga0496109_0353639_307_1197 294
113 3300048913 Ga0496110_0496537 Ga0496110_0496537_207_1097 294
114 3300048918 Ga0496115_0000049 Ga0496115_0000049_35580_36539 294
115 3300053087 Ga0500643_019624 Ga0500643_019624_468_1352 294
116 3300053104 Ga0500556_0018057 Ga0500556_0018057_959_1849 294
117 3300053133 Ga0500655_000147 Ga0500655_000147_8023_8934 294

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13456

RVT_3

Reverse transcriptase-like

175

297

0.96

PF00075

RNase_H

RNase H

169

299

0.78

PF00293

NUDIX

NUDIX domain

16

142

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
4e19-assembly2.cif.gz_B crystal structure of rnase h1 from halophilic archaeon halobacterium salinarum nrc-1 0.9677 157 286
3hst-assembly4.cif.gz_D n-terminal rnase h domain of rv2228c from mycobacterium tuberculosis as a fusion protein with maltose binding protein 0.9672 157 284
4h8k-assembly1.cif.gz_B crystal structure of lc11-rnase h1 in complex with rna/dna hybrid 0.953 158 287
4e19-assembly2.cif.gz_B crystal structure of rnase h1 from halophilic archaeon halobacterium salinarum nrc-1 0.9464 157 286
3u3g-assembly3.cif.gz_C structure of lc11-rnase h1 isolated from compost by metagenomic approach: insight into the structural bases for unusual enzymatic properties of sto-rnase h1 0.9397 156 287
ID Description Score Start End Superfamily
af_A0A0R0FBC1_213_345_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9825 158 284 3.30.420.10
af_A0A0P0X025_51_179_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9687 157 283 3.30.420.10
3hstD00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9672 157 284 3.30.420.10
4e19A00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9648 157 286 3.30.420.10
af_K7M7T9_315_438_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9574 158 279 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A831NGG8-F1-model_v4 deleted 0.9862 155 289
AF-A0A1F8XDR0-F1-model_v4 RNase H type-1 domain-containing protein 0.9841 161 287 GO:0003676
GO:0004523
AF-A0A0F0CJ98-F1-model_v4 Ribonuclease HI 0.979 157 293 GO:0003676
GO:0004523
AF-A0A1F4UNH0-F1-model_v4 RNase H type-1 domain-containing protein 0.979 157 286 GO:0003676
GO:0004523
AF-X8FHB3-F1-model_v4 deleted 0.979 157 282

Feature Viewer

pLDDT pTM Quality
82.3 0.51 Medium
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Predicted Structure (AlphaFold2)

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