F090510

General Info

Members Datasets Scaffolds Average Seq Length
116 98 232 280

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2739367654|2739605000
Length 325
Sequence SGDVGSGDVGSGDVGSGAAGTGPAPFGARLAAAMDEHGPLCVGIDPHASLLHAWGLPDDVSGLREFSLRVVDALGGRVAAFKPQAAFFERHGSRGLAVLEEVLAAARATGSGSSSGSTGTLTIVDAKRGDIGSTMGAYAEAFLADGSPLAGDALTVSPYLGFGSLAPAVELATATGRGLFVLCLTSNKEGFEVQHAVRRDASDGGAGGSDGGVGTSVAALMAAHAAVLNAGAEPMGSVGLVVGATIGDAVAATGTDLVAVNGPLLAPGVGAQGAGERELATTFGEARRNVLASSSRAVLGAGPTPEALVSAARDAAREATDALRG

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
7 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
8 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
9 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
10 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
11 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
12 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
13 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
14 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
17 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
18 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
19 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
20 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
21 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
22 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
23 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
24 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
25 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
26 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
27 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
28 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
29 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
30 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
31 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
32 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
33 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
34 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
35 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
36 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
37 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
38 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
39 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
40 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
41 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
42 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
43 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
44 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
45 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
46 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
47 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
48 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
49 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
50 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
51 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
52 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
53 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
54 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
55 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
56 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
57 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
58 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
59 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
60 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
61 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
62 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
63 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
64 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
65 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
66 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
67 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
68 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
69 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
70 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
71 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
72 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
73 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
74 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
75 2643221613 Oerskovia sp. Root22 Isolate Unclassified
76 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
77 2643221679 Angustibacter sp. Root456 Isolate Unclassified
78 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
79 2643221721 Oerskovia sp. Root918 Isolate Unclassified
80 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
81 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
82 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
83 2808606394 Promicromonospora sp. C35 Isolate Unclassified
84 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
85 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
86 2867475112 Streptomyces sp. TM32 Isolate Unclassified
87 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
88 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
89 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
90 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
91 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
92 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
93 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
94 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
95 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
96 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
97 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
98 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.14
Metatranscriptomes 0.86
Isolates 25

Biome Distribution

Category Percentage (%)
Aerial Root 1.72
Bulb 0
Endosphere 9.48
Nodule 0.86
Rhizoplane 11.21
Rhizosphere 50.86
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10037668 3300003203 Bacteria 1740
2 Ga0007423J48922_100137 3300003285 Bacteria 10048
3 JGI25160J50197_1039772 3300003354 Bacteria 1097
4 Ga0070677_10137141 3300005333 Bacteria 1124
5 Ga0070680_100289226 3300005336 Bacteria 1389
6 Ga0068857_100078577 3300005577 Bacteria 2945
7 Ga0068857_100254076 3300005577 Bacteria 1612
8 Ga0081539_10006066 3300005985 Bacteria 11820
9 Ga0075428_100274540 3300006844 Bacteria 1814
10 Ga0105245_10881060 3300009098 Bacteria 936
11 Ga0105246_10120295 3300011119 Bacteria 1945
12 Ga0157372_10493559 3300013307 Bacteria 1428
13 Ga0157375_10264980 3300013308 Bacteria 1880
14 Ga0157375_10738791 3300013308 Bacteria 1136
15 Ga0207426_1003507 3300025302 Bacteria 8450
16 Ga0207426_1014365 3300025302 Bacteria 2901
17 Ga0207657_10076816 3300025919 Bacteria 2816
18 Ga0207691_10295577 3300025940 Bacteria 1392
19 Ga0307517_10174335 3300028786 Bacteria 1405
20 Ga0307515_10007109 3300028794 Bacteria 22231
21 Ga0307515_10225355 3300028794 Bacteria 1681
22 Ga0307515_10226650 3300028794 Bacteria 1672
23 Ga0307512_10009848 3300030522 Bacteria 9173
24 Ga0307512_10030885 3300030522 Bacteria 4651
25 Ga0307513_10000866 3300031456 Bacteria 43887
26 Ga0307513_10199205 3300031456 Bacteria 1845
27 Ga0307509_10210378 3300031507 Bacteria 1770
28 Ga0307508_10045660 3300031616 Bacteria 3914
29 Ga0307508_10084516 3300031616 Bacteria 2756
30 Ga0307516_10007781 3300031730 Bacteria 12239
31 Ga0307416_100152147 3300032002 Bacteria 2124
32 Ga0307510_10123650 3300033180 Bacteria 2284
33 Ga0373924_0107598 3300035410 Bacteria 1203
34 Ga0395898_0008716 3300037466 Bacteria 10700
35 Ga0395901_0014992 3300038443 Bacteria 7877
36 Ga0395901_0034105 3300038443 Bacteria 5256
37 Ga0451833_0754208 3300041491 Bacteria 1851
38 Ga0451843_0973156 3300041509 Bacteria 2585
39 Ga0466969_0000535 3300044656 Bacteria 20835
40 Ga0466961_0179358 3300044693 Bacteria 1315
41 Ga0466960_0024917 3300044901 Bacteria 2703
42 Ga0466967_0136163 3300045976 Bacteria 2284
43 Ga0466967_0153500 3300045976 Bacteria 2155
44 Ga0495629_0145290 3300046459 Bacteria 1649
45 Ga0495632_0067265 3300046519 Bacteria 1728
46 Ga0495680_0351046 3300047322 Bacteria 1027
47 Ga0495675_0007817 3300047444 Bacteria 6601
48 Ga0495593_0131870 3300047673 Bacteria 1268
49 Ga0495593_0147703 3300047673 Bacteria 1190
50 Ga0496101_0059695 3300048904 Bacteria 2765
51 Ga0496102_0002716 3300048905 Bacteria 15056
52 Ga0496102_0213690 3300048905 Bacteria 1818
53 Ga0496102_0348781 3300048905 Bacteria 1394
54 Ga0496103_0083560 3300048906 Bacteria 2010
55 Ga0496105_0307762 3300048908 Bacteria 1273
56 Ga0496110_0024268 3300048913 Bacteria 5166
57 Ga0496110_0324826 3300048913 Bacteria 1402
58 Ga0496114_0013868 3300048917 Bacteria 6462
59 Ga0496114_0019008 3300048917 Bacteria 5566
60 Ga0496114_0191610 3300048917 Bacteria 1789
61 Ga0496115_0041737 3300048918 Bacteria 3653
62 Ga0496115_0249403 3300048918 Bacteria 1462
63 Ga0496118_0076198 3300048921 Bacteria 2387
64 Ga0496126_0274113 3300048929 Bacteria 1399
65 Ga0501033_0003296 3300049570 Bacteria 13343
66 Ga0501034_0154517 3300049571 Bacteria 2269
67 Ga0501036_0002141 3300049572 Bacteria 15410
68 Ga0501039_0069947 3300049575 Bacteria 2726
69 Ga0501043_0038571 3300049579 Bacteria 3756
70 Ga0501047_0241040 3300049581 Bacteria 1659
71 Ga0501070_0017784 3300049586 Bacteria 5969
72 Ga0501073_0374936 3300049589 Bacteria 983
73 Ga0501074_0008200 3300049590 Bacteria 7572
74 Ga0501035_0002656 3300049822 Bacteria 17390
75 Ga0501044_0003406 3300049823 Bacteria 17914
76 Ga0501044_0244102 3300049823 Bacteria 1739
77 Ga0495595_0308951 3300053084 Bacteria 796
78 Ga0495619_0039012 3300053085 Bacteria 3100
79 Ga0500646_0071845 3300053090 Bacteria 1039
80 Ga0500641_0030919 3300053096 Bacteria 2108
81 Ga0500562_018077 3300053108 Bacteria 1820
82 Ga0500594_0005461 3300053118 Bacteria 2821
83 Ga0500652_067556 3300053131 Bacteria 1478
84 Ga0500573_0106701 3300053140 Bacteria 1571
85 Ga0500604_0018997 3300053151 Bacteria 1921
86 Ga0500616_0001343 3300053153 Bacteria 24047
87 Ga0530510_0218181 3300061734 Bacteria 1417
88 2739605000 2739367654 Bacteria 6049412
89 2515494877 2515154088 Bacteria 5526283
90 2515718881 2515154129 Bacteria 5584369
91 2516083093 2515154202 Bacteria 5471270
92 2643849667 2643221567 Bacteria 4163945
93 2644083333 2643221613 Bacteria 4622396
94 2644135668 2643221624 Bacteria 4384879
95 2644445233 2643221679 Bacteria 3839507
96 2644503852 2643221690 Bacteria 4654705
97 2644666382 2643221721 Bacteria 4486924
98 2729904924 2728369276 Bacteria 5610032
99 2760308057 2758568522 Bacteria 5953541
100 2760623319 2758568621 Bacteria 5967089
101 2809028205 2808606394 Bacteria 6248540
102 2812375157 2811994882 Bacteria 4688362
103 2819691905 2818991462 Bacteria 4320267
104 2867475693 2867475112 Bacteria 6909112
105 2887446507 2887443736 Bacteria 4426037
106 2919450621 2919446982 Bacteria 3994487
107 2932431925 2932431166 Bacteria 4215299
108 2935891027 2935890801 Bacteria 4593001
109 2939658012 2939657138 Bacteria 3740283
110 2984579959 2984576629 Bacteria 4248407
111 2990260362 2990256926 Bacteria 4252839
112 3001891603 3001889506 Bacteria 2975194
113 8008580776 8008574985 Bacteria 7815457
114 8054163840 8054160619 Bacteria 7783213
115 8055416116 8055412473 Bacteria 6257500
116 8056582238 8056579771 Bacteria 5840325
117 JGI25406J46586_10037668
118 Ga0007423J48922_100137
119 JGI25160J50197_1039772
120 Ga0070677_10137141
121 Ga0070680_100289226
122 Ga0068857_100078577
123 Ga0068857_100254076
124 Ga0081539_10006066
125 Ga0075428_100274540
126 Ga0105245_10881060
127 Ga0105246_10120295
128 Ga0157372_10493559
129 Ga0157375_10264980
130 Ga0157375_10738791
131 Ga0207426_1003507
132 Ga0207426_1014365
133 Ga0207657_10076816
134 Ga0207691_10295577
135 Ga0307517_10174335
136 Ga0307515_10007109
137 Ga0307515_10225355
138 Ga0307515_10226650
139 Ga0307512_10009848
140 Ga0307512_10030885
141 Ga0307513_10000866
142 Ga0307513_10199205
143 Ga0307509_10210378
144 Ga0307508_10045660
145 Ga0307508_10084516
146 Ga0307516_10007781
147 Ga0307416_100152147
148 Ga0307510_10123650
149 Ga0373924_0107598
150 Ga0395898_0008716
151 Ga0395901_0014992
152 Ga0395901_0034105
153 Ga0451833_0754208
154 Ga0451843_0973156
155 Ga0466969_0000535
156 Ga0466961_0179358
157 Ga0466960_0024917
158 Ga0466967_0136163
159 Ga0466967_0153500
160 Ga0495629_0145290
161 Ga0495632_0067265
162 Ga0495680_0351046
163 Ga0495675_0007817
164 Ga0495593_0131870
165 Ga0495593_0147703
166 Ga0496101_0059695
167 Ga0496102_0002716
168 Ga0496102_0213690
169 Ga0496102_0348781
170 Ga0496103_0083560
171 Ga0496105_0307762
172 Ga0496110_0024268
173 Ga0496110_0324826
174 Ga0496114_0013868
175 Ga0496114_0019008
176 Ga0496114_0191610
177 Ga0496115_0041737
178 Ga0496115_0249403
179 Ga0496118_0076198
180 Ga0496126_0274113
181 Ga0501033_0003296
182 Ga0501034_0154517
183 Ga0501036_0002141
184 Ga0501039_0069947
185 Ga0501043_0038571
186 Ga0501047_0241040
187 Ga0501070_0017784
188 Ga0501073_0374936
189 Ga0501074_0008200
190 Ga0501035_0002656
191 Ga0501044_0003406
192 Ga0501044_0244102
193 Ga0495595_0308951
194 Ga0495619_0039012
195 Ga0500646_0071845
196 Ga0500641_0030919
197 Ga0500562_018077
198 Ga0500594_0005461
199 Ga0500652_067556
200 Ga0500573_0106701
201 Ga0500604_0018997
202 Ga0500616_0001343
203 Ga0530510_0218181
204 2739605000
205 2515494877
206 2515718881
207 2516083093
208 2643849667
209 2644083333
210 2644135668
211 2644445233
212 2644503852
213 2644666382
214 2729904924
215 2760308057
216 2760623319
217 2809028205
218 2812375157
219 2819691905
220 2867475693
221 2887446507
222 2919450621
223 2932431925
224 2935891027
225 2939658012
226 2984579959
227 2990260362
228 3001891603
229 8008580776
230 8054163840
231 8055416116
232 8056582238

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00215

OMPdecase

Orotidine 5'-phosphate decarboxylase / HUMPS family

38

312

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3v75-assembly1.cif.gz_A-2 crystal structure of putative orotidine 5'-phosphate decarboxylase from streptomyces avermitilis ma-4680 0.9737 1 275
3v75-assembly1.cif.gz_A-2 crystal structure of putative orotidine 5'-phosphate decarboxylase from streptomyces avermitilis ma-4680 0.9668 1 275
3qw4-assembly1.cif.gz_C structure of leishmania donovani ump synthase 0.8466 1 274
3r89-assembly1.cif.gz_B crystal structure of orotidine 5-phosphate decarboxylase from anaerococcus prevotii dsm 20548 0.8405 6 274
3qw3-assembly1.cif.gz_B structure of leishmania donovani omp decarboxylase 0.84 3 275
ID Description Score Start End Superfamily
af_P9WIU3_3_272_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9505 4 274 3.20.20.70
af_P9WIU3_3_272_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9402 4 274 3.20.20.70
3qw4B01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8378 1 274 3.20.20.70
3qw4B01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8317 1 274 3.20.20.70
af_Q4DBZ4_1_160_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8203 107 276 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A838GFG2-F1-model_v4 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) 1.001 2 94 GO:0004590
GO:0044205
AF-A0A6G3VQN6-F1-model_v4 deleted 0.9969 23 91
AF-A0A1A8Z7N8-F1-model_v4 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase) 0.9902 1 275 GO:0004590
GO:0006207
GO:0044205
AF-D9UC96-F1-model_v4 Orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.9887 1 159 GO:0004590
GO:0006207
GO:0044205
AF-A0A1I3KNS4-F1-model_v4 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase) 0.988 3 272 GO:0004590
GO:0006207
GO:0044205

Map