F088962

General Info

Members Datasets Scaffolds Average Seq Length
116 82 108 274

Family's Representative Sequence

Representative Sequence 3300031728|Ga0316578_10059798|Ga0316578_100597982
Length 294
Sequence MDLYDKASVDCSKLITKHYSTSFSIGIRLLEKRTRKAIYAIYGFVRLADEIVDSFYDADQMELLKKFKSDTFEAIDKGISTNPVLHSFQWAVNTYSIERELIDAFLYSMEMDLYISNYTSDKYNKYIYGSAEVVGLMCLRVYYSGDNENYNQLKKPAQILGRAFQQINFLRDLQDDYLKRGRIYFPGIDFDNLTQHEKADIESDIEKNLREAYLGIIMLRKGVRLGVYCAYVYYLQLFKKIKRTSADKLLENRIRINNFYKIILMIKSIMIWWFSFYPRKPRIRGNFVPEEVGV

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
3 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
4 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
5 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
6 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
7 2914759650 Rhizosphaericola mali Isolate Rhizosphere
8 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
9 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
10 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
11 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
12 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
13 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
14 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
15 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
16 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
17 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
23 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
37 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
38 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
39 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
40 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
41 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
42 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
43 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
52 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
53 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
54 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
55 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
61 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
62 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
63 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
64 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
65 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
66 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
67 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
68 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
69 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
70 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
71 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
72 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
73 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
74 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
75 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
76 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
77 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
78 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
79 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
80 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
81 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
82 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.38
Metatranscriptomes 0.86
Isolates 7.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.03
Nodule 0.86
Rhizoplane 0
Rhizosphere 84.48
Stem 0
Stem Tuber 0
Unclassified 8.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2879104 2162886007 Bacteria 104588
2 JGI24737J22298_10008632 3300001990 Bacteria 3408
3 JGI25162J39368_1000929 3300002737 Bacteria 18819
4 JGI25165J46597_1001587 3300003214 Bacteria 11061
5 rootH1_10148972 3300003316 Bacteria 1319
6 rootH1_10148972 3300003323 Bacteria 2773
7 rootH2_10006277 3300003320 Bacteria 28221
8 rootH2_10113445 3300003320 Bacteria 2437
9 rootL2_10234250 3300003322 Bacteria 3925
10 Ga0006562J51391_1000179 3300003578 Bacteria 7487
11 Ga0065704_10089554 3300005289 Bacteria 2843
12 Ga0070683_100195794 3300005329 Bacteria 1919
13 Ga0070688_100172878 3300005365 Bacteria 1492
14 Ga0070685_10002749 3300005466 Bacteria 9013
15 Ga0068853_100076962 3300005539 Unclassified 2914
16 Ga0075366_10002457 3300006195 Bacteria 9486
17 Ga0097621_100558972 3300006237 Bacteria 1042
18 Ga0105240_10000008 3300009093 Bacteria 618862
19 Ga0105240_10191227 3300009093 Bacteria 2407
20 Ga0105243_10000002 3300009148 Bacteria 856281
21 Ga0105243_10043128 3300009148 Unclassified 3535
22 Ga0105241_10382642 3300009174 Bacteria 1230
23 Ga0105242_10264581 3300009176 Bacteria 1555
24 Ga0157371_10005671 3300013102 Bacteria 10480
25 Ga0157371_10019153 3300013102 Bacteria 5052
26 Ga0157370_10009886 3300013104 Bacteria 10110
27 Ga0157370_10092013 3300013104 Bacteria 2847
28 Ga0157370_10107580 3300013104 Bacteria 2608
29 Ga0157370_10321202 3300013104 Bacteria 1428
30 Ga0157370_10380438 3300013104 Bacteria 1300
31 Ga0157369_10226120 3300013105 Bacteria 1957
32 Ga0157374_10000003 3300013296 Bacteria 854471
33 Ga0157374_10012487 3300013296 Bacteria 7393
34 Ga0157374_10094322 3300013296 Bacteria 2860
35 Ga0157374_10639856 3300013296 Bacteria 1075
36 Ga0163162_10000130 3300013306 Bacteria 68177
37 Ga0163162_10024640 3300013306 Bacteria 5942
38 Ga0163162_10116965 3300013306 Bacteria 2767
39 Ga0163162_10181801 3300013306 Bacteria 2229
40 Ga0157372_10057355 3300013307 Bacteria 4353
41 Ga0157375_10510975 3300013308 Bacteria 1365
42 Ga0157380_10000099 3300014326 Bacteria 48256
43 Ga0157376_10000580 3300014969 Bacteria 23607
44 Ga0157376_10340989 3300014969 Bacteria 1431
45 Ga0163161_10000903 3300017792 Bacteria 22958
46 Ga0163161_10000937 3300017792 Bacteria 22439
47 Ga0213872_10011824 3300021361 Bacteria 4125
48 Ga0207427_100043 3300025231 Bacteria 249595
49 Ga0209437_100170 3300025233 Bacteria 142489
50 Ga0209026_1006767 3300025250 Bacteria 2730
51 Ga0209233_1000349 3300025261 Bacteria 43702
52 Ga0207647_10087378 3300025904 Bacteria 1862
53 Ga0207695_10000021 3300025913 Bacteria 679399
54 Ga0207681_10165334 3300025923 Bacteria 1672
55 Ga0207709_10000003 3300025935 Bacteria 1050072
56 Ga0207709_10033443 3300025935 Unclassified 3019
57 Ga0207661_10115544 3300025944 Bacteria 2277
58 Ga0307515_10000848 3300028794 Bacteria 70311
59 Ga0265327_10000164 3300031251 Bacteria 143027
60 Ga0307408_100000083 3300031548 Bacteria 105013
61 Ga0316578_10059798 3300031728 Unclassified 2242
62 Ga0316577_10085931 3300031733 Unclassified 1760
63 Ga0307507_10008385 3300033179 Bacteria 14329
64 Ga0316584_0019031 3300036712 Unclassified 4960
65 Ga0395899_0006417 3300037312 Bacteria 9113
66 Ga0395900_0000413 3300037418 Bacteria 61555
67 Ga0395900_0014564 3300037418 Bacteria 8024
68 Ga0395898_0002918 3300037466 Bacteria 19458
69 Ga0395905_0000188 3300037471 Bacteria 98070
70 Ga0395905_0007216 3300037471 Bacteria 11082
71 Ga0395901_0002175 3300038443 Bacteria 20011
72 Ga0451577_0116982 3300042876 Unclassified 2388
73 Ga0451577_0129538 3300042876 Unclassified 2263
74 Ga0453683_0000332 3300044673 Bacteria 58077
75 Ga0453683_0004332 3300044673 Bacteria 10102
76 Ga0453683_0107059 3300044673 Bacteria 1757
77 Ga0453683_0324696 3300044673 Bacteria 986
78 Ga0453684_0019926 3300044712 Bacteria 10171
79 Ga0453684_0025043 3300044712 Bacteria 8683
80 Ga0453684_0044024 3300044712 Bacteria 5985
81 Ga0453684_0046657 3300044712 Bacteria 5759
82 Ga0453684_0924928 3300044712 Bacteria 932
83 Ga0451576_0001105 3300045051 Bacteria 49296
84 Ga0451576_0019496 3300045051 Bacteria 7402
85 Ga0451576_0446042 3300045051 Bacteria 1358
86 Ga0451576_0707890 3300045051 Bacteria 1058
87 Ga0495590_0009072 3300046457 Bacteria 3778
88 Ga0495650_0000036 3300046471 Bacteria 400633
89 Ga0495585_0006671 3300046492 Bacteria 7131
90 Ga0495606_0018240 3300046507 Bacteria 5271
91 Ga0495606_0037374 3300046507 Bacteria 3299
92 Ga0495610_0000458 3300046512 Bacteria 42182
93 Ga0495648_0002217 3300046524 Bacteria 18201
94 Ga0495663_0000401 3300046525 Bacteria 15934
95 Ga0495654_0027225 3300046530 Bacteria 2933
96 Ga0495609_0000083 3300046538 Bacteria 115045
97 Ga0495609_0005229 3300046538 Bacteria 6904
98 Ga0495622_0079927 3300046557 Bacteria 1505
99 Ga0495668_0000298 3300046616 Bacteria 68412
100 Ga0495625_0000003 3300046660 Bacteria 686847
101 Ga0495625_0000741 3300046660 Bacteria 45531
102 Ga0495625_0003720 3300046660 Bacteria 14873
103 Ga0495661_0002495 3300046665 Bacteria 14155
104 Ga0495649_0000002 3300046694 Bacteria 1093458
105 Ga0495677_0016882 3300047445 Unclassified 2647
106 Ga0495673_0012307 3300047469 Bacteria 4548
107 Ga0501034_0006249 3300049571 Bacteria 12819
108 nmdc:mga0k408_5850_c1 3300050493 Bacteria 6552

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0025043 Ga0453684_0025043_497_1243 247
2 3300044712 Ga0453684_0924928 Ga0453684_0924928_143_892 249
3 3300009148 Ga0105243_10000002 Ga0105243_10000002306 253
4 3300025935 Ga0207709_10000003 Ga0207709_10000003309 253
5 3300042876 Ga0451577_0116982 Ga0451577_0116982_384_1145 253
6 3300044712 Ga0453684_0046657 Ga0453684_0046657_4594_5355 253
7 3300003578 Ga0006562J51391_1000179 Ga0006562J51391_10001793 254
8 3300013102 Ga0157371_10019153 Ga0157371_100191535 255
9 3300025904 Ga0207647_10087378 Ga0207647_100873783 255
10 3300046457 Ga0495590_0009072 Ga0495590_0009072_955_1791 257
11 3300017792 Ga0163161_10000903 Ga0163161_1000090318 259
12 3300046525 Ga0495663_0000401 Ga0495663_0000401_6087_6923 259
13 3300013104 Ga0157370_10092013 Ga0157370_100920134 262
14 3300046507 Ga0495606_0037374 Ga0495606_0037374_1936_2772 262
15 3300046538 Ga0495609_0000083 Ga0495609_0000083_8058_8894 262
16 3300009093 Ga0105240_10000008 Ga0105240_1000000898 264
17 3300025913 Ga0207695_10000021 Ga0207695_10000021304 264
18 3300044673 Ga0453683_0324696 Ga0453683_0324696_159_956 264
19 3300013296 Ga0157374_10000003 Ga0157374_10000003300 266
20 3300014969 Ga0157376_10000580 Ga0157376_1000058021 266
21 3300031548 Ga0307408_100000083 Ga0307408_10000008354 267
22 3300005289 Ga0065704_10089554 Ga0065704_100895543 268
23 3300005365 Ga0070688_100172878 Ga0070688_1001728782 270
24 3300005466 Ga0070685_10002749 Ga0070685_100027496 270
25 3300006237 Ga0097621_100558972 Ga0097621_1005589721 272
26 3300013308 Ga0157375_10510975 Ga0157375_105109752 272
27 3300014969 Ga0157376_10340989 Ga0157376_103409891 272
28 iso_pu_bacteria 2852627209 2852631346 274
29 iso_pu_bacteria 2857627736 2857628559 274
30 iso_pu_bacteria 2871720351 2871721714 274
31 iso_pu_bacteria 2896317667 2896318549 274
32 iso_pu_bacteria 2898713307 2898715642 274
33 iso_pu_bacteria 2914759650 2914760973 274
34 iso_pu_bacteria 2929154850 2929155809 274
35 iso_pu_bacteria 2932082852 2932083583 274
36 iso_pu_bacteria 8055588893 8055588997 274
37 3300003316 rootH1_10148972 rootH1_101489722 275
38 3300003322 rootL2_10234250 rootL2_102342503 276
39 3300001990 JGI24737J22298_10008632 JGI24737J22298_100086324 278
40 3300002737 JGI25162J39368_1000929 JGI25162J39368_10009292 278
41 3300003214 JGI25165J46597_1001587 JGI25165J46597_100158715 278
42 3300003320 rootH2_10006277 rootH2_1000627712 278
43 3300003320 rootH2_10113445 rootH2_101134453 278
44 3300005329 Ga0070683_100195794 Ga0070683_1001957943 278
45 3300005539 Ga0068853_100076962 Ga0068853_1000769622 278
46 3300006195 Ga0075366_10002457 Ga0075366_100024572 278
47 3300009093 Ga0105240_10191227 Ga0105240_101912272 278
48 3300009148 Ga0105243_10043128 Ga0105243_100431283 278
49 3300009174 Ga0105241_10382642 Ga0105241_103826422 278
50 3300009176 Ga0105242_10264581 Ga0105242_102645812 278
51 3300013102 Ga0157371_10005671 Ga0157371_100056718 278
52 3300013104 Ga0157370_10009886 Ga0157370_100098868 278
53 3300013104 Ga0157370_10107580 Ga0157370_101075803 278
54 3300013104 Ga0157370_10321202 Ga0157370_103212022 278
55 3300013104 Ga0157370_10380438 Ga0157370_103804381 278
56 3300013105 Ga0157369_10226120 Ga0157369_102261202 278
57 3300013296 Ga0157374_10012487 Ga0157374_100124873 278
58 3300013296 Ga0157374_10094322 Ga0157374_100943224 278
59 3300013296 Ga0157374_10639856 Ga0157374_106398561 278
60 3300013306 Ga0163162_10000130 Ga0163162_100001308 278
61 3300013306 Ga0163162_10024640 Ga0163162_100246403 278
62 3300013306 Ga0163162_10116965 Ga0163162_101169652 278
63 3300013306 Ga0163162_10181801 Ga0163162_101818012 278
64 3300013307 Ga0157372_10057355 Ga0157372_100573555 278
65 3300014326 Ga0157380_10000099 Ga0157380_1000009928 278
66 3300017792 Ga0163161_10000937 Ga0163161_100009379 278
67 3300021361 Ga0213872_10011824 Ga0213872_100118243 278
68 3300025231 Ga0207427_100043 Ga0207427_10004390 278
69 3300025233 Ga0209437_100170 Ga0209437_10017030 278
70 3300025250 Ga0209026_1006767 Ga0209026_10067672 278
71 3300025261 Ga0209233_1000349 Ga0209233_100034935 278
72 3300025923 Ga0207681_10165334 Ga0207681_101653343 278
73 3300025935 Ga0207709_10033443 Ga0207709_100334433 278
74 3300025944 Ga0207661_10115544 Ga0207661_101155442 278
75 3300028794 Ga0307515_10000848 Ga0307515_1000084829 278
76 3300031251 Ga0265327_10000164 Ga0265327_1000016475 278
77 3300031728 Ga0316578_10059798 Ga0316578_100597982 278
78 3300031733 Ga0316577_10085931 Ga0316577_100859312 278
79 3300033179 Ga0307507_10008385 Ga0307507_100083855 278
80 3300036712 Ga0316584_0019031 Ga0316584_0019031_3888_4772 278
81 3300037312 Ga0395899_0006417 Ga0395899_0006417_3521_4357 278
82 3300037418 Ga0395900_0000413 Ga0395900_0000413_55886_56722 278
83 3300037418 Ga0395900_0014564 Ga0395900_0014564_6840_7676 278
84 3300037466 Ga0395898_0002918 Ga0395898_0002918_4177_5013 278
85 3300037471 Ga0395905_0000188 Ga0395905_0000188_41349_42185 278
86 3300037471 Ga0395905_0007216 Ga0395905_0007216_1097_1933 278
87 3300038443 Ga0395901_0002175 Ga0395901_0002175_4834_5670 278
88 3300042876 Ga0451577_0129538 Ga0451577_0129538_302_1141 278
89 3300044673 Ga0453683_0000332 Ga0453683_0000332_14801_15640 278
90 3300044673 Ga0453683_0004332 Ga0453683_0004332_977_1816 278
91 3300044673 Ga0453683_0107059 Ga0453683_0107059_193_1032 278
92 3300044712 Ga0453684_0019926 Ga0453684_0019926_3894_4733 278
93 3300044712 Ga0453684_0044024 Ga0453684_0044024_2296_3135 278
94 3300045051 Ga0451576_0001105 Ga0451576_0001105_25704_26543 278
95 3300045051 Ga0451576_0019496 Ga0451576_0019496_3388_4227 278
96 3300045051 Ga0451576_0446042 Ga0451576_0446042_282_1121 278
97 3300045051 Ga0451576_0707890 Ga0451576_0707890_83_922 278
98 3300046471 Ga0495650_0000036 Ga0495650_0000036_271782_272618 278
99 3300046492 Ga0495585_0006671 Ga0495585_0006671_1543_2379 278
100 3300046507 Ga0495606_0018240 Ga0495606_0018240_1383_2219 278
101 3300046512 Ga0495610_0000458 Ga0495610_0000458_33938_34774 278
102 3300046524 Ga0495648_0002217 Ga0495648_0002217_11434_12270 278
103 3300046530 Ga0495654_0027225 Ga0495654_0027225_1588_2424 278
104 3300046538 Ga0495609_0005229 Ga0495609_0005229_4508_5344 278
105 3300046557 Ga0495622_0079927 Ga0495622_0079927_191_1027 278
106 3300046616 Ga0495668_0000298 Ga0495668_0000298_7213_8049 278
107 3300046660 Ga0495625_0000003 Ga0495625_0000003_674927_675763 278
108 3300046660 Ga0495625_0000741 Ga0495625_0000741_42145_42981 278
109 3300046660 Ga0495625_0003720 Ga0495625_0003720_10028_10864 278
110 3300046665 Ga0495661_0002495 Ga0495661_0002495_84_920 278
111 3300046694 Ga0495649_0000002 Ga0495649_0000002_331244_332080 278
112 3300047445 Ga0495677_0016882 Ga0495677_0016882_1170_2006 278
113 3300047469 Ga0495673_0012307 Ga0495673_0012307_3073_3909 278
114 3300049571 Ga0501034_0006249 Ga0501034_0006249_6246_7082 278
115 3300050493 nmdc:mga0k408_5850_c1 nmdc:mga0k408_5850_c1_2772_3608 278
116 2162886007 SwRhRL2b_contig_2879104 SwRhRL2b_0102.00000260 279

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00494

SQS_PSY

Squalene/phytoene synthase

16

260

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5iys-assembly1.cif.gz_A crystal structure of a dehydrosqualene synthase in complex with ligand 0.8547 6 274
3acx-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bph-673 0.8484 6 272
3adz-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with intermediate pspp 0.8475 5 272
3ae0-assembly2.cif.gz_B crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with geranylgeranyl thiopyrophosphate 0.8468 6 272
2zcr-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bisphosphonate bph-698 0.8434 5 272
ID Description Score Start End Superfamily
3w7fA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8586 6 272 1.10.600.10
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8464 5 269 1.10.600.10
4hd1A00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8219 6 244 1.10.600.10
3w7fA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8214 6 272 1.10.600.10
af_A0A0R0HM78_74_346_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8172 4 266 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A7T9HVC1-F1-model_v4 deleted 0.9947 1 277
AF-A0A1B6CT17-F1-model_v4 Bifunctional lycopene cyclase/phytoene synthase (EC 2.5.1.32) (EC 5.5.1.19) 0.9946 1 266 GO:0004311
GO:0016020
GO:0016117
GO:0016767
GO:0016872
GO:0045436
GO:0051996
GO:0065008
AF-A0A1M6K995-F1-model_v4 Phytoene/squalene synthetase 0.9945 1 277 GO:0016117
GO:0051996
AF-A0A7V3UFC8-F1-model_v4 Phytoene/squalene synthase family protein 0.9943 1 276 GO:0004311
GO:0016117
GO:0051996
AF-A0A3C2CDU8-F1-model_v4 deleted 0.9939 1 277

Feature Viewer

pLDDT pTM Quality
91.98 0.89 High
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Predicted Structure (AlphaFold2)

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