F088881

General Info

Members Datasets Scaffolds Average Seq Length
116 76 232 801

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10021073|Ga0265327_100210732
Length 857
Sequence MMSIIRTKIRGKSFASCPKKAANSIEFSNLKFTSNHQKSQTVVTRKFPIFVPLILLSRRITMNISYSWLKDYINLELSPAEVAATLTQLGLETGSIEEFESIKGGLKGLVVGEVITCQKHPNSDHLSVTTVNIGLEEALPIVCGAPNVAAGQKVIVATVGTVLYNGNEQFKIQKSKIRGEVSMGMICAEDEIGIGTDHNGIMVLDPTAKTGTLASDYFNIQSDFTLEVDLTPNRIDSASHIGVARDLSAFLSQKSNIQYFRPDIRAFKTDNHDLPVSVVIENPEACPRYSGLTISGIKVSKSPEWLQNRLKAIGQNPINNIVDITNFVLFETGQPLHAFDADAIKGKQVIVKTAVSGTKFVTLDGLKRELSDKDLMICNTEEAMCIGGVFGGLDSGVKESTTSIFLESAFFNPVYIRKTARRHSLNTDASFRFERGVDPHGTIFALRRAALLIQEIAGGSISSEVVDIVADPSILDFFPVEVSYSNITRLIGKEIPRETIKQILKSLEIVINSETEEGLSLSVPPFRVDVKREVDIIEEILRIYGYNHVEPNKATKATIQHTPHPDKIKLQLAYYDHLGTFKSENTVQIFNPLSSDLNGMRQSLIFGGLEAINRNTNFRNSDLRLYEFGNVYHFDGTKSYDNPVKNYSESEHIGIWITGNKEVANWNVREEPTSFFTLKINAENVLSRLGLEPSKCSVESISNDLLSEGLEYRYNNLLIGQIGYVSNHILRNMNISAGVFYGDLHWTSILKAIKNNKVSYTPLQKYPEVRRDLALLIDKDVQFSTIKALAFKTERQILRNVNIFDVYQGANLPSGKKSYAVSFILQDDEKTLNENQIEKTMSRLISVYEREVGAQIR

Samples

Sample ID Description Type Environment
1 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
21 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
22 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
23 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
27 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
28 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
29 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
30 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
31 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
32 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
33 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
40 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
41 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
42 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
43 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
44 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
45 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
46 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
47 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
48 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
49 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
50 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
51 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
52 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
53 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
54 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
55 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
56 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
57 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
58 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
59 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
60 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
61 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
62 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
63 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
64 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
65 2738541283 Pedobacter sp. OK701 Isolate Unclassified
66 2738541284 Pedobacter sp. YR016 Isolate Unclassified
67 2738543023 Pedobacter sp. OK628 Isolate Unclassified
68 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
69 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
70 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
71 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
72 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
73 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
74 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
75 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
76 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.79
Metatranscriptomes 0
Isolates 11.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.59
Nodule 0
Rhizoplane 0
Rhizosphere 85.34
Stem 0
Stem Tuber 0
Unclassified 1.72

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265327_10021073 3300031251 Bacteria 3946
2 SwRhRL2b_contig_1807957 2162886007 Bacteria 6762
3 rootH2_10014840 3300003320 Bacteria 5335
4 JGI25160J50197_1005247 3300003354 Bacteria 5423
5 Ga0065714_10002405 3300005288 Bacteria 23624
6 Ga0065714_10002437 3300005288 Bacteria 17662
7 Ga0065714_10003323 3300005288 Bacteria 12201
8 Ga0065714_10072630 3300005288 Bacteria 3333
9 Ga0065704_10070616 3300005289 Bacteria 19086
10 Ga0070677_10007073 3300005333 Bacteria 3736
11 Ga0070666_10015102 3300005335 Bacteria 4923
12 Ga0070659_100006949 3300005366 Bacteria 8196
13 Ga0070662_100005690 3300005457 Bacteria 7976
14 Ga0070681_10042729 3300005458 Bacteria 4541
15 Ga0070684_100010619 3300005535 Bacteria 7302
16 Ga0068855_100000033 3300005563 Bacteria 167299
17 Ga0068855_100006980 3300005563 Bacteria 13709
18 Ga0070664_100001503 3300005564 Bacteria 18593
19 Ga0068852_100000503 3300005616 Bacteria 25688
20 Ga0068852_100003509 3300005616 Bacteria 10967
21 Ga0068852_100009741 3300005616 Bacteria 7142
22 Ga0081540_1005596 3300005983 Bacteria 9353
23 Ga0075429_100015749 3300006880 Bacteria 6549
24 Ga0105240_10040454 3300009093 Bacteria 5961
25 Ga0114129_10035352 3300009147 Bacteria 7058
26 Ga0105237_10001078 3300009545 Bacteria 36653
27 Ga0105237_10002084 3300009545 Bacteria 25287
28 Ga0105237_10022388 3300009545 Bacteria 6484
29 Ga0105237_10022864 3300009545 Bacteria 6412
30 Ga0105239_10030054 3300010375 Bacteria 5975
31 Ga0157373_10000479 3300013100 Bacteria 31723
32 Ga0157373_10002131 3300013100 Bacteria 14995
33 Ga0157373_10004668 3300013100 Bacteria 10305
34 Ga0157373_10011876 3300013100 Bacteria 6399
35 Ga0157371_10003321 3300013102 Bacteria 14702
36 Ga0157371_10011265 3300013102 Bacteria 6905
37 Ga0157370_10000304 3300013104 Bacteria 61764
38 Ga0157370_10025648 3300013104 Bacteria 5833
39 Ga0157370_10029057 3300013104 Bacteria 5431
40 Ga0157369_10045934 3300013105 Bacteria 4748
41 Ga0157374_10000025 3300013296 Bacteria 245131
42 Ga0157380_10000953 3300014326 Bacteria 18358
43 Ga0182008_10000030 3300014497 Bacteria 169168
44 Ga0182008_10000131 3300014497 Bacteria 56984
45 Ga0157376_10000106 3300014969 Bacteria 60118
46 Ga0182006_1002113 3300015261 Bacteria 11083
47 Ga0182006_1003594 3300015261 Bacteria 7891
48 Ga0163161_10001070 3300017792 Bacteria 20756
49 Ga0163161_10002109 3300017792 Bacteria 14388
50 Ga0213876_10007925 3300021384 Bacteria 5764
51 Ga0207647_10000050 3300025904 Bacteria 88099
52 Ga0207695_10003218 3300025913 Bacteria 23245
53 Ga0207671_10001661 3300025914 Bacteria 25296
54 Ga0207706_10018625 3300025933 Bacteria 6247
55 Ga0207667_10000046 3300025949 Bacteria 245420
56 Ga0207674_10044294 3300026116 Bacteria 4583
57 Ga0265318_10008671 3300028577 Unclassified 4507
58 Ga0307515_10000001 3300028794 Bacteria 4259510
59 Ga0307515_10000007 3300028794 Bacteria 719669
60 Ga0307515_10094627 3300028794 Bacteria 3688
61 Ga0316177_1197006 3300030731 Bacteria 9744
62 Ga0316176_1205455 3300030732 Bacteria 7320
63 Ga0316183_1073865 3300030742 Bacteria 13477
64 Ga0316181_1003409 3300030744 Bacteria 9767
65 Ga0265327_10000013 3300031251 Bacteria 519549
66 Ga0265327_10000288 3300031251 Bacteria 99230
67 Ga0307412_10000065 3300031911 Bacteria 122279
68 Ga0307414_10000396 3300032004 Bacteria 23654
69 Ga0307414_10038676 3300032004 Bacteria 3206
70 Ga0395900_0033286 3300037418 Bacteria 5306
71 Ga0395905_0000227 3300037471 Bacteria 85540
72 Ga0436365_1777169 3300039437 Bacteria 24248
73 Ga0451577_0000090 3300042876 Bacteria 202241
74 Ga0451577_0000703 3300042876 Bacteria 52315
75 Ga0451577_0001935 3300042876 Bacteria 26123
76 Ga0451577_0033151 3300042876 Bacteria 4655
77 Ga0451577_0077676 3300042876 Bacteria 2960
78 Ga0453683_0000005 3300044673 Bacteria 741657
79 Ga0453683_0000119 3300044673 Bacteria 117129
80 Ga0453683_0003084 3300044673 Bacteria 12460
81 Ga0453683_0045483 3300044673 Bacteria 2752
82 Ga0453683_0059256 3300044673 Unclassified 2394
83 Ga0453684_0000322 3300044712 Bacteria 202241
84 Ga0453684_0000329 3300044712 Bacteria 198284
85 Ga0453684_0000835 3300044712 Bacteria 103976
86 Ga0453684_0001551 3300044712 Bacteria 64214
87 Ga0453684_0001990 3300044712 Bacteria 52425
88 Ga0453684_0016092 3300044712 Bacteria 11737
89 Ga0453684_0112939 3300044712 Bacteria 3297
90 Ga0451576_0000195 3300045051 Bacteria 153276
91 Ga0451576_0000278 3300045051 Bacteria 125279
92 Ga0451576_0000352 3300045051 Bacteria 110468
93 Ga0451576_0014608 3300045051 Bacteria 8727
94 Ga0495609_0007896 3300046538 Bacteria 5259
95 Ga0496122_0003793 3300048925 Bacteria 19464
96 Ga0496123_0001711 3300048926 Bacteria 29305
97 Ga0501242_000060 3300049674 Bacteria 6933
98 Ga0501243_002530 3300049675 Bacteria 2683
99 Ga0501241_002430 3300049758 Bacteria 3601
100 Ga0501266_000489 3300049763 Bacteria 5237
101 nmdc:mga05p37_45858_c1 3300050507 Bacteria 5376
102 Ga0500651_0000124 3300053093 Bacteria 47212
103 Ga0500616_0011087 3300053153 Bacteria 5354
104 2522551968 2522125168 Bacteria 7376607
105 2738755514 2738541283 Bacteria 7222293
106 2738763448 2738541284 Bacteria 5199923
107 2739303568 2738543023 Bacteria 6767879
108 2776615115 2775506987 Bacteria 5373360
109 2839991792 2839989709 Bacteria 3773432
110 2842906981 2842903701 Bacteria 6986368
111 2852629313 2852627209 Bacteria 5896285
112 2896346480 2896344016 Bacteria 3811746
113 2898714839 2898713307 Bacteria 4110805
114 2910246401 2910245624 Bacteria 6935613
115 2919190414 2919186247 Bacteria 6244071
116 2939668695 2939664404 Bacteria 6364494
117 Ga0265327_10021073
118 SwRhRL2b_contig_1807957
119 rootH2_10014840
120 JGI25160J50197_1005247
121 Ga0065714_10002405
122 Ga0065714_10002437
123 Ga0065714_10003323
124 Ga0065714_10072630
125 Ga0065704_10070616
126 Ga0070677_10007073
127 Ga0070666_10015102
128 Ga0070659_100006949
129 Ga0070662_100005690
130 Ga0070681_10042729
131 Ga0070684_100010619
132 Ga0068855_100000033
133 Ga0068855_100006980
134 Ga0070664_100001503
135 Ga0068852_100000503
136 Ga0068852_100003509
137 Ga0068852_100009741
138 Ga0081540_1005596
139 Ga0075429_100015749
140 Ga0105240_10040454
141 Ga0114129_10035352
142 Ga0105237_10001078
143 Ga0105237_10002084
144 Ga0105237_10022388
145 Ga0105237_10022864
146 Ga0105239_10030054
147 Ga0157373_10000479
148 Ga0157373_10002131
149 Ga0157373_10004668
150 Ga0157373_10011876
151 Ga0157371_10003321
152 Ga0157371_10011265
153 Ga0157370_10000304
154 Ga0157370_10025648
155 Ga0157370_10029057
156 Ga0157369_10045934
157 Ga0157374_10000025
158 Ga0157380_10000953
159 Ga0182008_10000030
160 Ga0182008_10000131
161 Ga0157376_10000106
162 Ga0182006_1002113
163 Ga0182006_1003594
164 Ga0163161_10001070
165 Ga0163161_10002109
166 Ga0213876_10007925
167 Ga0207647_10000050
168 Ga0207695_10003218
169 Ga0207671_10001661
170 Ga0207706_10018625
171 Ga0207667_10000046
172 Ga0207674_10044294
173 Ga0265318_10008671
174 Ga0307515_10000001
175 Ga0307515_10000007
176 Ga0307515_10094627
177 Ga0316177_1197006
178 Ga0316176_1205455
179 Ga0316183_1073865
180 Ga0316181_1003409
181 Ga0265327_10000013
182 Ga0265327_10000288
183 Ga0307412_10000065
184 Ga0307414_10000396
185 Ga0307414_10038676
186 Ga0395900_0033286
187 Ga0395905_0000227
188 Ga0436365_1777169
189 Ga0451577_0000090
190 Ga0451577_0000703
191 Ga0451577_0001935
192 Ga0451577_0033151
193 Ga0451577_0077676
194 Ga0453683_0000005
195 Ga0453683_0000119
196 Ga0453683_0003084
197 Ga0453683_0045483
198 Ga0453683_0059256
199 Ga0453684_0000322
200 Ga0453684_0000329
201 Ga0453684_0000835
202 Ga0453684_0001551
203 Ga0453684_0001990
204 Ga0453684_0016092
205 Ga0453684_0112939
206 Ga0451576_0000195
207 Ga0451576_0000278
208 Ga0451576_0000352
209 Ga0451576_0014608
210 Ga0495609_0007896
211 Ga0496122_0003793
212 Ga0496123_0001711
213 Ga0501242_000060
214 Ga0501243_002530
215 Ga0501241_002430
216 Ga0501266_000489
217 nmdc:mga05p37_45858_c1
218 Ga0500651_0000124
219 Ga0500616_0011087
220 2522551968
221 2738755514
222 2738763448
223 2739303568
224 2776615115
225 2839991792
226 2842906981
227 2852629313
228 2896346480
229 2898714839
230 2910246401
231 2919190414
232 2939668695

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03147

FDX-ACB

Ferredoxin-fold anticodon binding domain

764

857

0.99

PF03483

B3_4

B3/4 domain

285

458

0.99

PF03484

B5

tRNA synthetase B5 domain

480

546

0.98

PF01588

tRNA_bind

Putative tRNA binding domain

109

213

0.96

PF17759

tRNA_synthFbeta

Phenylalanyl tRNA synthetase beta chain CLM domain

569

746

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ica-assembly1.cif.gz_A the crystal structure of the beta subunit of a phenylalanyl-trna synthetase from porphyromonas gingivalis w83 0.9188 501 690
3ica-assembly1.cif.gz_B the crystal structure of the beta subunit of a phenylalanyl-trna synthetase from porphyromonas gingivalis w83 0.8952 501 690
3ig2-assembly3.cif.gz_B the crystal structure of a putative phenylalanyl-trna synthetase (phers) beta chain domain from bacteroides fragilis to 2.1a 0.8766 500 690
1e7z-assembly1.cif.gz_A crystal structure of the emap2/rna binding domain of the p43 protein from human aminoacyl-trna synthetase complex 0.868 48 126
3ig2-assembly3.cif.gz_C-2 the crystal structure of a putative phenylalanyl-trna synthetase (phers) beta chain domain from bacteroides fragilis to 2.1a 0.8654 501 690
ID Description Score Start End Superfamily
4p72A02 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9755 46 159 2.40.50.140
af_Q2FZD8_204_404_3.50.40.10 Alpha Beta;3-Layer(bba) Sandwich;Phenylalanyl-tRNA Synthetase; Chain B, domain 3;Phenylalanyl-trna Synthetase, Chain B, domain 3 0.9674 207 404 3.50.40.10
af_P07395_197_395_3.50.40.10 Alpha Beta;3-Layer(bba) Sandwich;Phenylalanyl-tRNA Synthetase; Chain B, domain 3;Phenylalanyl-trna Synthetase, Chain B, domain 3 0.9657 204 404 3.50.40.10
af_P9WFU1_211_407_3.50.40.10 Alpha Beta;3-Layer(bba) Sandwich;Phenylalanyl-tRNA Synthetase; Chain B, domain 3;Phenylalanyl-trna Synthetase, Chain B, domain 3 0.959 212 406 3.50.40.10
af_P07395_197_395_3.50.40.10 Alpha Beta;3-Layer(bba) Sandwich;Phenylalanyl-tRNA Synthetase; Chain B, domain 3;Phenylalanyl-trna Synthetase, Chain B, domain 3 0.9562 204 404 3.50.40.10
ID Description Score Start End GO Terms
AF-A0A5T0UQL8-F1-model_v4 Phenylalanine--tRNA ligase subunit beta 0.9756 233 335 GO:0003723
GO:0004826
AF-K1UAA1-F1-model_v4 Phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20) 0.9755 236 423 GO:0003723
GO:0004826
GO:0006432
GO:0009328
AF-A0A527GL99-F1-model_v4 Phenylalanine--tRNA ligase subunit beta 0.9742 252 374 GO:0003723
GO:0004826
AF-A0A6L8AY87-F1-model_v4 deleted 0.97 702 798
AF-A0A2M7QFQ6-F1-model_v4 Phenylalanine--tRNA ligase subunit beta 0.969 256 392 GO:0003723
GO:0004826

Map