F088060

General Info

Members Datasets Scaffolds Average Seq Length
116 95 104 333

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10181180|Ga0114129_101811803
Length 354
Sequence MKKPAQASFAKSAPPEAARSQQMAKILVTGADGFIGSHLVEELVRTGRDVRAFVLYNSFGQWGWLDTVPEDVRSSIEVVMGDVRDANGVRTATKGCDTVLHLAALIGIPYSYHAAESYVDVNVRGTLNVVQAARELELSKVVVTSTSEVYGTAQFVPITEEHPLVGQSPYAATKIGADQVAMSYFRSFGTPVAIARPFNTYGPRQSTRAVIPTAITQLANGGNVVKLGATNPTRDFNFVADTVRGVIAAHDSPAAVGEVINIGSNFEVSVGDTVALIAEVMGKNIAIECEEERVRPANSEVERLWADNGKARRLLGWQPEFAGRDGLRRGLKITVDWFSDPANQARYRNDRYMI

Samples

Sample ID Description Type Environment
1 2643221599 Rhizobium sp. Root708 Isolate Unclassified
2 2788500588 Lysinibacillus sp. YS11 Isolate Unclassified
3 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
4 2891633521 Azoarcus rhizosphaerae CC-YHH848 Isolate Rhizosphere
5 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
6 2939593269 Lysinibacillus parviboronicapiens 736 Isolate Rhizosphere
7 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
8 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
9 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
10 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
15 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
28 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
36 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
48 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
49 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
50 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
51 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
52 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
53 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
54 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
55 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
56 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
57 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
58 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
59 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
60 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
61 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
62 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
63 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
64 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
65 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
77 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
78 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
79 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
80 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
83 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
84 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
85 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
86 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
87 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
88 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
89 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
90 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
91 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
92 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
93 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
94 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
95 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.66
Metatranscriptomes 0
Isolates 10.34

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.48
Nodule 0
Rhizoplane 0
Rhizosphere 73.28
Stem 0
Stem Tuber 0
Unclassified 17.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10104448 3300003320 Bacteria 2724
2 Ga0055536_1030132 3300003781 Bacteria 1443
3 Ga0070683_100056690 3300005329 Bacteria 3638
4 Ga0068868_100006554 3300005338 Bacteria 8245
5 Ga0070709_10115971 3300005434 Bacteria 1807
6 Ga0070698_100133475 3300005471 Unclassified 2437
7 Ga0070684_100017493 3300005535 Bacteria 5887
8 Ga0070693_100045847 3300005547 Bacteria 2480
9 Ga0070704_100006138 3300005549 Bacteria 7056
10 Ga0070704_100028563 3300005549 Bacteria 3713
11 Ga0068855_100063516 3300005563 Bacteria 4309
12 Ga0068854_100100653 3300005578 Bacteria 2166
13 Ga0068856_100049677 3300005614 Bacteria 4134
14 Ga0070712_100113712 3300006175 Bacteria 2025
15 Ga0097621_100100575 3300006237 Bacteria 2432
16 Ga0075430_100007475 3300006846 Bacteria 9223
17 Ga0075431_100010873 3300006847 Bacteria 9156
18 Ga0075433_10009676 3300006852 Bacteria 7716
19 Ga0105251_10039970 3300009011 Bacteria 2289
20 Ga0111539_10018385 3300009094 Bacteria 8657
21 Ga0114129_10181180 3300009147 Bacteria 2866
22 Ga0105248_10011636 3300009177 Bacteria 9694
23 Ga0163162_10025523 3300013306 Bacteria 5840
24 Ga0157379_10033033 3300014968 Bacteria 4615
25 Ga0209676_1000684 3300025292 Bacteria 47908
26 Ga0209676_1004927 3300025292 Bacteria 7185
27 Ga0209676_1007023 3300025292 Bacteria 5403
28 Ga0209758_1000029 3300025297 Bacteria 520787
29 Ga0209758_1038707 3300025297 Bacteria 1825
30 Ga0207713_1054033 3300025735 Bacteria 1577
31 Ga0207693_10241727 3300025915 Bacteria 1417
32 Ga0207659_10035379 3300025926 Bacteria 3452
33 Ga0207711_10001990 3300025941 Bacteria 18518
34 Ga0207689_10020145 3300025942 Bacteria 5618
35 Ga0207667_10053359 3300025949 Bacteria 4254
36 Ga0207702_10100435 3300026078 Bacteria 2553
37 Ga0207641_10085618 3300026088 Bacteria 2747
38 Ga0207676_10188869 3300026095 Bacteria 1811
39 Ga0207675_100016845 3300026118 Bacteria 6827
40 Ga0265338_10170247 3300028800 Unclassified 1672
41 Ga0265327_10034514 3300031251 Unclassified 2806
42 Ga0307408_100038712 3300031548 Bacteria 3366
43 Ga0307405_10162182 3300031731 Bacteria 1585
44 Ga0400489_36148 3300039093 Bacteria 13756
45 Ga0439462_0074055 3300042015 Bacteria 926
46 Ga0453684_0016631 3300044712 Bacteria 11479
47 Ga0466960_0002008 3300044901 Bacteria 7548
48 Ga0451576_0000203 3300045051 Bacteria 149655
49 Ga0451576_0408928 3300045051 Unclassified 1423
50 Ga0495590_0000095 3300046457 Bacteria 54200
51 Ga0495667_0018233 3300046559 Bacteria 4742
52 Ga0495625_0072019 3300046660 Bacteria 2424
53 Ga0496117_0000130 3300048920 Bacteria 162947
54 Ga0496119_0000268 3300048922 Bacteria 73982
55 Ga0496119_0013818 3300048922 Bacteria 6384
56 Ga0496120_0000003 3300048923 Bacteria 538703
57 Ga0496120_0001218 3300048923 Bacteria 32510
58 Ga0496120_0008098 3300048923 Bacteria 7723
59 Ga0496122_0008305 3300048925 Bacteria 11254
60 Ga0496122_0034170 3300048925 Bacteria 4167
61 Ga0496123_0006541 3300048926 Bacteria 11254
62 Ga0496125_0000027 3300048928 Bacteria 397211
63 Ga0496126_0000580 3300048929 Bacteria 69551
64 Ga0496126_0008674 3300048929 Bacteria 10920
65 Ga0496126_0203434 3300048929 Bacteria 1671
66 Ga0501033_0002785 3300049570 Bacteria 14658
67 Ga0501034_0100055 3300049571 Bacteria 2893
68 Ga0501034_0131413 3300049571 Bacteria 2486
69 Ga0501036_0010529 3300049572 Bacteria 7640
70 Ga0501037_0016225 3300049573 Bacteria 5481
71 Ga0501038_0141574 3300049574 Bacteria 1967
72 Ga0501039_0016925 3300049575 Bacteria 5588
73 Ga0501043_0018178 3300049579 Bacteria 5512
74 Ga0501043_0032541 3300049579 Bacteria 4100
75 Ga0501046_0001821 3300049580 Bacteria 20313
76 Ga0501046_0007992 3300049580 Bacteria 9249
77 Ga0501047_0021110 3300049581 Bacteria 6252
78 Ga0501067_0011483 3300049583 Bacteria 4907
79 Ga0501067_0083727 3300049583 Bacteria 1769
80 Ga0501070_0010618 3300049586 Bacteria 7785
81 Ga0501073_0000814 3300049589 Bacteria 22154
82 Ga0501073_0006482 3300049589 Bacteria 8706
83 Ga0501074_0032992 3300049590 Bacteria 3752
84 Ga0501079_0052898 3300049741 Bacteria 3133
85 Ga0501080_0002872 3300049742 Bacteria 15146
86 Ga0501080_0012192 3300049742 Bacteria 7877
87 Ga0501083_0072031 3300049744 Bacteria 2297
88 Ga0501035_0028920 3300049822 Bacteria 5056
89 Ga0501044_0002071 3300049823 Bacteria 23114
90 Ga0501044_0401264 3300049823 Bacteria 1283
91 nmdc:mga05p37_169045_c1 3300050507 Bacteria 2667
92 nmdc:mga0qj67_28335_c1 3300050509 Bacteria 4347
93 nmdc:mga06r32_66708_c1 3300050510 Bacteria 3473
94 nmdc:mga0n895_174270_c1 3300050512 Bacteria 2182
95 nmdc:mga0rr50_111051_c1 3300050513 Bacteria 2169
96 Ga0500593_002669 3300053117 Bacteria 6598
97 Ga0500564_027444 3300053138 Bacteria 2621
98 Ga0500616_0000699 3300053153 Bacteria 39072
99 Ga0500616_0018921 3300053153 Bacteria 3890
100 Ga0500645_028138 3300053730 Bacteria 1703
101 Ga0501084_0033628 3300054114 Bacteria 4289
102 Ga0501084_0063004 3300054114 Bacteria 3104
103 Ga0501082_0006098 3300060353 Bacteria 10464
104 Ga0501082_0016550 3300060353 Bacteria 6348

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045051 Ga0451576_0408928 Ga0451576_0408928_49_906 285
2 3300042015 Ga0439462_0074055 Ga0439462_0074055_18_890 290
3 3300053138 Ga0500564_027444 Ga0500564_027444_13_918 301
4 3300005329 Ga0070683_100056690 Ga0070683_1000566902 317
5 3300005535 Ga0070684_100017493 Ga0070684_1000174935 317
6 3300050512 nmdc:mga0n895_174270_c1 nmdc:mga0n895_174270_c1_815_1819 319
7 3300044901 Ga0466960_0002008 Ga0466960_0002008_2741_3709 322
8 iso_pu_bacteria 2989771324 2989773126 325
9 3300005549 Ga0070704_100006138 Ga0070704_1000061382 326
10 3300044712 Ga0453684_0016631 Ga0453684_0016631_1487_2470 326
11 3300048920 Ga0496117_0000130 Ga0496117_0000130_136349_137329 326
12 3300048922 Ga0496119_0000268 Ga0496119_0000268_12550_13530 326
13 3300048922 Ga0496119_0013818 Ga0496119_0013818_3774_4754 326
14 3300048923 Ga0496120_0000003 Ga0496120_0000003_82610_83590 326
15 3300048923 Ga0496120_0001218 Ga0496120_0001218_17667_18647 326
16 3300048923 Ga0496120_0008098 Ga0496120_0008098_3897_4877 326
17 3300048925 Ga0496122_0008305 Ga0496122_0008305_4338_5318 326
18 3300048926 Ga0496123_0006541 Ga0496123_0006541_4338_5318 326
19 3300048928 Ga0496125_0000027 Ga0496125_0000027_38815_39795 326
20 3300048929 Ga0496126_0000580 Ga0496126_0000580_27852_28832 326
21 3300048929 Ga0496126_0008674 Ga0496126_0008674_5602_6582 326
22 iso_pu_bacteria 2643221599 2644007256 327
23 iso_pu_bacteria 2891633521 2891637077 327
24 iso_pu_bacteria 2788500588 2791211961 328
25 iso_pu_bacteria 8056533031 8056536055 328
26 3300005434 Ga0070709_10115971 Ga0070709_101159711 329
27 3300005549 Ga0070704_100028563 Ga0070704_1000285631 329
28 3300006175 Ga0070712_100113712 Ga0070712_1001137122 329
29 3300006852 Ga0075433_10009676 Ga0075433_100096762 329
30 3300025915 Ga0207693_10241727 Ga0207693_102417272 329
31 iso_pu_bacteria 2938649242 2938652557 329
32 iso_pu_bacteria 2939593269 2939595119 329
33 iso_pu_bacteria 2888578766 2888584555 330
34 iso_pu_bacteria 2939679117 2939680604 330
35 iso_pu_bacteria 2980182181 2980190035 330
36 3300046457 Ga0495590_0000095 Ga0495590_0000095_14259_15254 331
37 3300046559 Ga0495667_0018233 Ga0495667_0018233_2653_3648 331
38 3300046660 Ga0495625_0072019 Ga0495625_0072019_924_1919 331
39 3300048929 Ga0496126_0203434 Ga0496126_0203434_246_1241 331
40 3300049571 Ga0501034_0131413 Ga0501034_0131413_900_1895 331
41 3300005471 Ga0070698_100133475 Ga0070698_1001334751 332
42 3300005547 Ga0070693_100045847 Ga0070693_1000458471 332
43 3300025297 Ga0209758_1038707 Ga0209758_10387072 332
44 3300028800 Ga0265338_10170247 Ga0265338_101702472 332
45 3300031548 Ga0307408_100038712 Ga0307408_1000387122 332
46 3300031731 Ga0307405_10162182 Ga0307405_101621822 332
47 3300039093 Ga0400489_36148 Ga0400489_36148_9751_10749 332
48 3300053153 Ga0500616_0018921 Ga0500616_0018921_2097_3095 332
49 iso_pu_bacteria 2971410472 2971416601 332
50 3300009094 Ga0111539_10018385 Ga0111539_100183857 333
51 3300025292 Ga0209676_1007023 Ga0209676_10070234 333
52 3300045051 Ga0451576_0000203 Ga0451576_0000203_46698_47702 333
53 iso_pu_bacteria 8054465665 8054471451 333
54 3300009011 Ga0105251_10039970 Ga0105251_100399702 334
55 3300025297 Ga0209758_1000029 Ga0209758_1000029329 334
56 3300025735 Ga0207713_1054033 Ga0207713_10540332 334
57 3300049574 Ga0501038_0141574 Ga0501038_0141574_724_1728 334
58 3300049579 Ga0501043_0032541 Ga0501043_0032541_1332_2336 334
59 3300049580 Ga0501046_0007992 Ga0501046_0007992_3641_4645 334
60 3300049581 Ga0501047_0021110 Ga0501047_0021110_4210_5214 334
61 3300049583 Ga0501067_0083727 Ga0501067_0083727_80_1084 334
62 3300049589 Ga0501073_0006482 Ga0501073_0006482_5932_6936 334
63 3300049742 Ga0501080_0012192 Ga0501080_0012192_4650_5654 334
64 3300049744 Ga0501083_0072031 Ga0501083_0072031_556_1560 334
65 3300049823 Ga0501044_0002071 Ga0501044_0002071_12266_13270 334
66 3300053153 Ga0500616_0000699 Ga0500616_0000699_23204_24208 334
67 3300053730 Ga0500645_028138 Ga0500645_028138_582_1586 334
68 3300054114 Ga0501084_0033628 Ga0501084_0033628_2186_3190 334
69 3300060353 Ga0501082_0006098 Ga0501082_0006098_5932_6936 334
70 3300005563 Ga0068855_100063516 Ga0068855_1000635162 335
71 3300005614 Ga0068856_100049677 Ga0068856_1000496772 335
72 3300006237 Ga0097621_100100575 Ga0097621_1001005753 335
73 3300025949 Ga0207667_10053359 Ga0207667_100533592 335
74 3300026078 Ga0207702_10100435 Ga0207702_101004352 335
75 3300049570 Ga0501033_0002785 Ga0501033_0002785_10637_11644 335
76 3300049571 Ga0501034_0100055 Ga0501034_0100055_127_1134 335
77 3300049572 Ga0501036_0010529 Ga0501036_0010529_3398_4405 335
78 3300049573 Ga0501037_0016225 Ga0501037_0016225_2366_3373 335
79 3300049575 Ga0501039_0016925 Ga0501039_0016925_2316_3323 335
80 3300049579 Ga0501043_0018178 Ga0501043_0018178_3631_4638 335
81 3300049580 Ga0501046_0001821 Ga0501046_0001821_13373_14380 335
82 3300049583 Ga0501067_0011483 Ga0501067_0011483_1313_2320 335
83 3300049586 Ga0501070_0010618 Ga0501070_0010618_6460_7467 335
84 3300049589 Ga0501073_0000814 Ga0501073_0000814_17715_18722 335
85 3300049590 Ga0501074_0032992 Ga0501074_0032992_2356_3363 335
86 3300049741 Ga0501079_0052898 Ga0501079_0052898_2022_3029 335
87 3300049742 Ga0501080_0002872 Ga0501080_0002872_12246_13253 335
88 3300049822 Ga0501035_0028920 Ga0501035_0028920_2457_3464 335
89 3300049823 Ga0501044_0401264 Ga0501044_0401264_150_1157 335
90 3300054114 Ga0501084_0063004 Ga0501084_0063004_1274_2281 335
91 3300060353 Ga0501082_0016550 Ga0501082_0016550_3839_4846 335
92 3300003320 rootH2_10104448 rootH2_101044483 336
93 3300003781 Ga0055536_1030132 Ga0055536_10301321 336
94 3300005338 Ga0068868_100006554 Ga0068868_1000065542 336
95 3300005578 Ga0068854_100100653 Ga0068854_1001006532 336
96 3300006846 Ga0075430_100007475 Ga0075430_1000074759 336
97 3300006847 Ga0075431_100010873 Ga0075431_1000108738 336
98 3300009147 Ga0114129_10181180 Ga0114129_101811803 336
99 3300009177 Ga0105248_10011636 Ga0105248_100116365 336
100 3300013306 Ga0163162_10025523 Ga0163162_100255236 336
101 3300014968 Ga0157379_10033033 Ga0157379_100330332 336
102 3300025292 Ga0209676_1000684 Ga0209676_10006847 336
103 3300025292 Ga0209676_1004927 Ga0209676_10049272 336
104 3300025926 Ga0207659_10035379 Ga0207659_100353792 336
105 3300025941 Ga0207711_10001990 Ga0207711_100019904 336
106 3300025942 Ga0207689_10020145 Ga0207689_100201453 336
107 3300026088 Ga0207641_10085618 Ga0207641_100856182 336
108 3300026095 Ga0207676_10188869 Ga0207676_101888692 336
109 3300026118 Ga0207675_100016845 Ga0207675_1000168456 336
110 3300031251 Ga0265327_10034514 Ga0265327_100345143 336
111 3300048925 Ga0496122_0034170 Ga0496122_0034170_305_1315 336
112 3300050507 nmdc:mga05p37_169045_c1 nmdc:mga05p37_169045_c1_769_1833 336
113 3300050509 nmdc:mga0qj67_28335_c1 nmdc:mga0qj67_28335_c1_2173_3186 336
114 3300050510 nmdc:mga06r32_66708_c1 nmdc:mga06r32_66708_c1_847_1860 336
115 3300050513 nmdc:mga0rr50_111051_c1 nmdc:mga0rr50_111051_c1_918_1928 336
116 3300053117 Ga0500593_002669 Ga0500593_002669_2399_3439 336

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

26

263

0.99

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

27

330

0.93

PF07993

NAD_binding_4

Male sterility protein

28

229

0.83

PF00106

adh_short

short chain dehydrogenase

24

191

0.78

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

27

252

0.78

PF04321

RmlD_sub_bind

RmlD substrate binding domain

24

314

0.75

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

26

314

0.75

PF13460

NAD_binding_10

NAD(P)H-binding

30

210

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
2pk3-assembly1.cif.gz_B crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase 0.9244 6 321
1rpn-assembly3.cif.gz_C crystal structure of gdp-d-mannose 4,6-dehydratase in complexes with gdp and nadph 0.9198 6 329
3m2p-assembly3.cif.gz_D the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.9196 6 318
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9171 6 320
4lw8-assembly1.cif.gz_B crystal structure of a putative epimerase from burkholderia cenocepacia j2315 0.9159 6 321
ID Description Score Start End Superfamily
af_Q869N3_132_238_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.947 6 35 3.90.180.10
6dntA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9361 3 244 3.40.50.720
6dntA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9272 3 244 3.40.50.720
2pk3B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9212 6 301 3.40.50.720
af_Q4CM81_7_150_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9157 6 145 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A357VSV2-F1-model_v4 NAD-dependent dehydratase 0.9888 6 247 GO:0016831
AF-A0A357VSV2-F1-model_v4 NAD-dependent dehydratase 0.9848 6 247 GO:0016831
AF-A0A849GSL6-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9815 72 336
AF-A0A7T9FNH5-F1-model_v4 deleted 0.9805 6 336
AF-A0A5D0UHD6-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9803 6 336 GO:0016831

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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