F077390

General Info

Members Datasets Scaffolds Average Seq Length
114 94 113 477

Family's Representative Sequence

Representative Sequence 3300005356|Ga0070674_100000017|Ga0070674_10000001798
Length 532
Sequence VCRRNRVSARRVLSRIWIHHPLRGRLHRLLGVVPQIRTTPREERLPGTPRIGGVKLGELIAGIDVATTRGDLDAEISSLAYDSRRVESGVLFFCVVGEKADGHEFGAAAVEAGAVALVVERELDVDVAQVVVPDARAAMAPVAARFWGDPTAKLRVVGITGTNGKTTTAFLVREILETAGIQCGLLGTVRQVVGGRDEGAERTTPEAIDLQATFRRMLDAGDRACAMEVSSHALELHRCDAIHFETALFTNLTQDHLDFHGGMEEYFRSKRRLFEMGPRTAIVNVDDEYGRRLAGEFDCVAFSADGAAADYSAQAVAFDAAGSEFEVDGTMVRLALPGQFNVANALGAYAAAVEIGVDPPAAVEGLARAERVPGRFEPIDEGQPFAVLVDYAHTPDSLENVLHAARELGRGRVLSVFGAGGDRDREKRPKMGRAGASLSDLAVVTSDNPRSEDPDAIIAEILTGIPDGAEVEVEPDRRAAIGLAFERARPGDVVVIAGKGHERGQEFEGGRTIPFDDREVAREELRRLGSPA

Samples

Sample ID Description Type Environment
1 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
13 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
14 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
18 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
26 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
27 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
28 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
29 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
47 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
48 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
49 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
50 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
51 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
54 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
55 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
56 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
57 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
58 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
59 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
60 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
61 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
62 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
63 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
64 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
65 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
66 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
67 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
68 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
69 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
70 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
71 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
79 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
80 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
81 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
82 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
83 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
84 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
87 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
88 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
89 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
90 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
91 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
92 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
93 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
94 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.12
Metatranscriptomes 0
Isolates 0.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.14
Rhizosphere 92.98
Stem 0
Stem Tuber 0
Unclassified 0.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100003032 3300005331 Bacteria 13894
2 Ga0070682_100000017 3300005337 Bacteria 235228
3 Ga0068868_100000026 3300005338 Bacteria 81980
4 Ga0068868_100023793 3300005338 Bacteria 4639
5 Ga0070674_100000017 3300005356 Bacteria 90884
6 Ga0070674_100000036 3300005356 Bacteria 60112
7 Ga0070674_100046765 3300005356 Bacteria 2962
8 Ga0070673_100002732 3300005364 Bacteria 10833
9 Ga0070659_100035000 3300005366 Bacteria 3909
10 Ga0070710_10000003 3300005437 Bacteria 277772
11 Ga0068867_100000373 3300005459 Bacteria 29787
12 Ga0068867_100017439 3300005459 Bacteria 5101
13 Ga0070684_100039610 3300005535 Bacteria 4055
14 Ga0070686_100002414 3300005544 Bacteria 10292
15 Ga0070693_100001584 3300005547 Bacteria 10241
16 Ga0068864_100000031 3300005618 Bacteria 215331
17 Ga0068866_10000001 3300005718 Bacteria 519680
18 Ga0068866_10002691 3300005718 Bacteria 7335
19 Ga0068863_100000170 3300005841 Bacteria 70180
20 Ga0081455_10022282 3300005937 Bacteria 5924
21 Ga0081540_1018709 3300005983 Bacteria 4239
22 Ga0070715_10000001 3300006163 Bacteria 693690
23 Ga0075430_100011635 3300006846 Bacteria 7485
24 Ga0075430_100024394 3300006846 Bacteria 5146
25 Ga0075431_100014090 3300006847 Bacteria 8082
26 Ga0105245_10000179 3300009098 Bacteria 60347
27 Ga0105242_10048613 3300009176 Bacteria 3448
28 Ga0105242_10107886 3300009176 Bacteria 2369
29 Ga0105238_10000009 3300009551 Bacteria 288729
30 Ga0157370_10033909 3300013104 Bacteria 4975
31 Ga0157374_10255814 3300013296 Bacteria 1724
32 Ga0157375_10001512 3300013308 Bacteria 19993
33 Ga0157379_10033285 3300014968 Bacteria 4597
34 Ga0163161_10000021 3300017792 Bacteria 208779
35 Ga0207692_10000016 3300025898 Bacteria 86771
36 Ga0207642_10000002 3300025899 Bacteria 658166
37 Ga0207642_10004992 3300025899 Bacteria 4305
38 Ga0207685_10000005 3300025905 Bacteria 289944
39 Ga0207652_10181067 3300025921 Bacteria 1894
40 Ga0207694_10000004 3300025924 Bacteria 967075
41 Ga0207687_10004410 3300025927 Bacteria 9389
42 Ga0207664_10014336 3300025929 Bacteria 5721
43 Ga0207690_10030977 3300025932 Bacteria 3418
44 Ga0207686_10119265 3300025934 Bacteria 1793
45 Ga0207669_10000001 3300025937 Bacteria 377747
46 Ga0207669_10000049 3300025937 Bacteria 60278
47 Ga0207651_10001434 3300025960 Bacteria 10856
48 Ga0207677_10000106 3300026023 Bacteria 68108
49 Ga0207641_10000301 3300026088 Bacteria 61780
50 Ga0207648_10000630 3300026089 Bacteria 39502
51 Ga0207676_10000031 3300026095 Bacteria 215877
52 Ga0268264_10004510 3300028381 Bacteria 11878
53 Ga0265327_10023462 3300031251 Bacteria 3653
54 Ga0307405_10042811 3300031731 Bacteria 2758
55 Ga0307413_10014752 3300031824 Bacteria 3982
56 Ga0307410_10107999 3300031852 Bacteria 2008
57 Ga0307415_100113433 3300032126 Bacteria 2016
58 Ga0373937_0014366 3300036401 Bacteria 6990
59 Ga0395898_0108118 3300037466 Bacteria 2667
60 Ga0395901_0078668 3300038443 Bacteria 3443
61 Ga0466963_0000067 3300044694 Bacteria 35973
62 Ga0466957_0109060 3300044842 Bacteria 1754
63 Ga0495603_0002143 3300046455 Bacteria 11616
64 Ga0495653_0078041 3300046463 Bacteria 2457
65 Ga0495582_0000004 3300046473 Bacteria 168322
66 Ga0495608_0000080 3300046511 Bacteria 71060
67 Ga0495618_0000008 3300046514 Bacteria 204578
68 Ga0495630_0011251 3300046517 Bacteria 6472
69 Ga0495586_0015216 3300046535 Bacteria 4092
70 Ga0495635_0000034 3300046663 Bacteria 96408
71 Ga0495658_0000004 3300046683 Bacteria 173598
72 Ga0495669_0000030 3300046684 Bacteria 102988
73 Ga0495624_0103612 3300046690 Bacteria 1751
74 Ga0495600_0025768 3300046809 Bacteria 3790
75 Ga0496105_0006840 3300048908 Bacteria 8772
76 Ga0496106_0000041 3300048909 Bacteria 107155
77 Ga0496108_0000001 3300048911 Bacteria 919044
78 Ga0496109_0000004 3300048912 Bacteria 404818
79 Ga0496110_0008872 3300048913 Bacteria 8105
80 Ga0496110_0118874 3300048913 Bacteria 2380
81 Ga0496110_0251955 3300048913 Bacteria 1607
82 Ga0501036_0066980 3300049572 Bacteria 3038
83 Ga0501038_0068753 3300049574 Bacteria 3011
84 Ga0501039_0091011 3300049575 Bacteria 2377
85 Ga0501040_0013973 3300049576 Bacteria 5286
86 Ga0501040_0016345 3300049576 Bacteria 4911
87 Ga0501042_0030740 3300049578 Bacteria 3796
88 Ga0501048_0015947 3300049582 Bacteria 5544
89 Ga0501069_0000200 3300049585 Bacteria 26519
90 Ga0501070_0000439 3300049586 Bacteria 37789
91 Ga0501071_0030656 3300049587 Bacteria 3804
92 Ga0501071_0035313 3300049587 Bacteria 3561
93 Ga0501071_0252649 3300049587 Bacteria 1331
94 Ga0501073_0005079 3300049589 Bacteria 9868
95 Ga0501075_0031806 3300049591 Bacteria 3919
96 Ga0501075_0031926 3300049591 Bacteria 3912
97 Ga0501075_0110304 3300049591 Bacteria 2092
98 Ga0501076_0021912 3300049592 Bacteria 4906
99 Ga0501079_0005283 3300049741 Bacteria 9607
100 Ga0501079_0061294 3300049741 Bacteria 2902
101 Ga0501080_0038853 3300049742 Bacteria 4441
102 Ga0501081_0025062 3300049743 Bacteria 4010
103 Ga0501083_0007568 3300049744 Bacteria 7696
104 Ga0501045_0001477 3300049824 Bacteria 15625
105 nmdc:mga0qj67_37639_c1 3300050509 Bacteria 3791
106 Ga0495612_0000022 3300053078 Bacteria 119126
107 Ga0495595_0030785 3300053084 Bacteria 2408
108 Ga0501084_0000581 3300054114 Bacteria 27940
109 Ga0501084_0001269 3300054114 Bacteria 19906
110 Ga0501084_0062243 3300054114 Bacteria 3124
111 Ga0501084_0069434 3300054114 Bacteria 2950
112 Ga0501082_0008124 3300060353 Bacteria 9055
113 Ga0530510_0000884 3300061734 Bacteria 19759

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049587 Ga0501071_0252649 Ga0501071_0252649_37_1290 391
2 3300005718 Ga0068866_10002691 Ga0068866_100026916 411
3 3300025934 Ga0207686_10119265 Ga0207686_101192651 411
4 3300025937 Ga0207669_10000049 Ga0207669_1000004957 411
5 3300046511 Ga0495608_0000080 Ga0495608_0000080_12809_14122 411
6 3300046535 Ga0495586_0015216 Ga0495586_0015216_274_1590 412
7 3300005338 Ga0068868_100000026 Ga0068868_10000002633 417
8 3300026023 Ga0207677_10000106 Ga0207677_1000010620 417
9 3300013296 Ga0157374_10255814 Ga0157374_102558142 420
10 3300053078 Ga0495612_0000022 Ga0495612_0000022_61359_62786 425
11 3300046517 Ga0495630_0011251 Ga0495630_0011251_133_1518 426
12 3300046684 Ga0495669_0000030 Ga0495669_0000030_49933_51342 426
13 3300005841 Ga0068863_100000170 Ga0068863_1000001707 429
14 3300026088 Ga0207641_10000301 Ga0207641_1000030152 429
15 3300028381 Ga0268264_10004510 Ga0268264_100045107 429
16 3300048911 Ga0496108_0000001 Ga0496108_0000001_824163_825599 432
17 3300048912 Ga0496109_0000004 Ga0496109_0000004_77974_79410 432
18 3300046514 Ga0495618_0000008 Ga0495618_0000008_169027_170412 435
19 3300046463 Ga0495653_0078041 Ga0495653_0078041_73_1461 436
20 3300013104 Ga0157370_10033909 Ga0157370_100339094 438
21 3300005618 Ga0068864_100000031 Ga0068864_100000031186 443
22 3300013308 Ga0157375_10001512 Ga0157375_100015125 443
23 3300026095 Ga0207676_10000031 Ga0207676_10000031185 443
24 3300009098 Ga0105245_10000179 Ga0105245_1000017958 445
25 3300025899 Ga0207642_10004992 Ga0207642_100049922 447
26 3300009551 Ga0105238_10000009 Ga0105238_100000099 448
27 3300025924 Ga0207694_10000004 Ga0207694_10000004286 448
28 3300053084 Ga0495595_0030785 Ga0495595_0030785_70_1560 450
29 3300005437 Ga0070710_10000003 Ga0070710_10000003263 451
30 3300025898 Ga0207692_10000016 Ga0207692_1000001613 451
31 3300048908 Ga0496105_0006840 Ga0496105_0006840_1774_3225 455
32 3300005535 Ga0070684_100039610 Ga0070684_1000396104 456
33 3300014968 Ga0157379_10033285 Ga0157379_100332852 456
34 3300031852 Ga0307410_10107999 Ga0307410_101079992 456
35 3300048913 Ga0496110_0008872 Ga0496110_0008872_77_1510 456
36 3300048913 Ga0496110_0251955 Ga0496110_0251955_58_1506 456
37 3300005356 Ga0070674_100000036 Ga0070674_10000003657 457
38 3300009176 Ga0105242_10107886 Ga0105242_101078861 457
39 3300046809 Ga0495600_0025768 Ga0495600_0025768_2280_3716 457
40 3300049585 Ga0501069_0000200 Ga0501069_0000200_5752_7164 457
41 3300049586 Ga0501070_0000439 Ga0501070_0000439_28350_29762 457
42 3300049587 Ga0501071_0030656 Ga0501071_0030656_764_2176 457
43 3300049589 Ga0501073_0005079 Ga0501073_0005079_1766_3178 457
44 3300049742 Ga0501080_0038853 Ga0501080_0038853_962_2374 457
45 3300049744 Ga0501083_0007568 Ga0501083_0007568_2580_3992 457
46 3300054114 Ga0501084_0000581 Ga0501084_0000581_1857_3269 457
47 3300036401 Ga0373937_0014366 Ga0373937_0014366_4084_5568 459
48 3300049576 Ga0501040_0016345 Ga0501040_0016345_2357_3751 459
49 3300049587 Ga0501071_0035313 Ga0501071_0035313_1084_2478 459
50 3300049741 Ga0501079_0061294 Ga0501079_0061294_1119_2513 459
51 3300054114 Ga0501084_0069434 Ga0501084_0069434_506_1900 459
52 3300031731 Ga0307405_10042811 Ga0307405_100428112 462
53 3300031824 Ga0307413_10014752 Ga0307413_100147522 462
54 3300005983 Ga0081540_1018709 Ga0081540_10187093 465
55 3300025921 Ga0207652_10181067 Ga0207652_101810672 465
56 3300032126 Ga0307415_100113433 Ga0307415_1001134332 465
57 3300005366 Ga0070659_100035000 Ga0070659_1000350002 468
58 3300044694 Ga0466963_0000067 Ga0466963_0000067_32215_33636 468
59 3300048913 Ga0496110_0118874 Ga0496110_0118874_68_1489 468
60 3300049591 Ga0501075_0031926 Ga0501075_0031926_2362_3849 468
61 3300005337 Ga0070682_100000017 Ga0070682_100000017112 469
62 3300025929 Ga0207664_10014336 Ga0207664_100143362 469
63 3300031251 Ga0265327_10023462 Ga0265327_100234621 469
64 3300037466 Ga0395898_0108118 Ga0395898_0108118_961_2418 469
65 3300038443 Ga0395901_0078668 Ga0395901_0078668_1896_3353 469
66 3300044842 Ga0466957_0109060 Ga0466957_0109060_170_1615 469
67 iso_pu_bacteria 2925326138 2925326892 469
68 3300005459 Ga0068867_100000373 Ga0068867_1000003734 470
69 3300025927 Ga0207687_10004410 Ga0207687_100044105 470
70 3300025932 Ga0207690_10030977 Ga0207690_100309771 470
71 3300026089 Ga0207648_10000630 Ga0207648_1000063039 470
72 3300046455 Ga0495603_0002143 Ga0495603_0002143_10031_11512 470
73 3300046473 Ga0495582_0000004 Ga0495582_0000004_60128_61579 470
74 3300046683 Ga0495658_0000004 Ga0495658_0000004_77977_79428 470
75 3300046690 Ga0495624_0103612 Ga0495624_0103612_248_1738 470
76 3300005356 Ga0070674_100000017 Ga0070674_10000001798 472
77 3300005364 Ga0070673_100002732 Ga0070673_1000027327 472
78 3300005547 Ga0070693_100001584 Ga0070693_1000015843 472
79 3300005718 Ga0068866_10000001 Ga0068866_10000001521 472
80 3300006163 Ga0070715_10000001 Ga0070715_10000001511 472
81 3300017792 Ga0163161_10000021 Ga0163161_10000021113 472
82 3300025899 Ga0207642_10000002 Ga0207642_10000002242 472
83 3300025905 Ga0207685_10000005 Ga0207685_10000005221 472
84 3300025937 Ga0207669_10000001 Ga0207669_10000001300 472
85 3300025960 Ga0207651_10001434 Ga0207651_100014347 472
86 3300046663 Ga0495635_0000034 Ga0495635_0000034_71383_72879 472
87 3300048909 Ga0496106_0000041 Ga0496106_0000041_72491_73987 472
88 3300005356 Ga0070674_100046765 Ga0070674_1000467652 473
89 3300005937 Ga0081455_10022282 Ga0081455_100222823 473
90 3300006846 Ga0075430_100024394 Ga0075430_1000243944 473
91 3300006847 Ga0075431_100014090 Ga0075431_1000140907 473
92 3300050509 nmdc:mga0qj67_37639_c1 nmdc:mga0qj67_37639_c1_2204_3685 473
93 3300049574 Ga0501038_0068753 Ga0501038_0068753_1302_2813 474
94 3300049575 Ga0501039_0091011 Ga0501039_0091011_424_1935 474
95 3300049576 Ga0501040_0013973 Ga0501040_0013973_1332_2843 474
96 3300049582 Ga0501048_0015947 Ga0501048_0015947_2107_3618 474
97 3300049591 Ga0501075_0031806 Ga0501075_0031806_1520_3031 474
98 3300049592 Ga0501076_0021912 Ga0501076_0021912_1446_2957 474
99 3300049741 Ga0501079_0005283 Ga0501079_0005283_1264_2775 474
100 3300049743 Ga0501081_0025062 Ga0501081_0025062_2244_3755 474
101 3300049824 Ga0501045_0001477 Ga0501045_0001477_5717_7228 474
102 3300054114 Ga0501084_0001269 Ga0501084_0001269_527_2038 474
103 3300060353 Ga0501082_0008124 Ga0501082_0008124_3913_5424 474
104 3300061734 Ga0530510_0000884 Ga0530510_0000884_9311_10822 474
105 3300049572 Ga0501036_0066980 Ga0501036_0066980_242_1753 476
106 3300054114 Ga0501084_0062243 Ga0501084_0062243_1509_3020 476
107 3300005331 Ga0070670_100003032 Ga0070670_10000303210 479
108 3300005338 Ga0068868_100023793 Ga0068868_1000237932 479
109 3300005459 Ga0068867_100017439 Ga0068867_1000174393 479
110 3300005544 Ga0070686_100002414 Ga0070686_1000024144 479
111 3300006846 Ga0075430_100011635 Ga0075430_1000116352 479
112 3300009176 Ga0105242_10048613 Ga0105242_100486132 479
113 3300049578 Ga0501042_0030740 Ga0501042_0030740_948_2411 479
114 3300049591 Ga0501075_0110304 Ga0501075_0110304_130_1647 479

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

374

500

0.96

PF08245

Mur_ligase_M

Mur ligase middle domain

159

352

0.92

PF01225

Mur_ligase

Mur ligase family, catalytic domain

75

147

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xja-assembly3.cif.gz_C structure of mure from m.tuberculosis with dipeptide and adp 0.9293 1 479
2xja-assembly1.cif.gz_A structure of mure from m.tuberculosis with dipeptide and adp 0.928 1 479
2xja-assembly3.cif.gz_C structure of mure from m.tuberculosis with dipeptide and adp 0.9274 1 479
2xja-assembly1.cif.gz_A structure of mure from m.tuberculosis with dipeptide and adp 0.9261 1 479
2wtz-assembly1.cif.gz_A mure ligase of mycobacterium tuberculosis 0.9222 1 476
ID Description Score Start End Superfamily
4c13A01 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;MurE/MurF, N-terminal domain 0.946 1 95 3.40.1390.10
af_I1KPB4_561_737_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9455 332 478 3.90.190.20
4qf5B01 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;MurE/MurF, N-terminal domain 0.9306 23 79 3.40.1390.10
1gg4B03 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;MurE/MurF, N-terminal domain 0.9295 1 79 3.40.1390.10
2wtzA03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9202 327 476 3.90.190.20
ID Description Score Start End GO Terms
AF-A0A7W0S1J1-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9933 1 257 GO:0005524
GO:0009058
GO:0016881
AF-A0A7W0S1J1-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9894 1 257 GO:0005524
GO:0009058
GO:0016881
AF-A0A2V6AFD5-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.983 1 168 GO:0005524
GO:0009058
GO:0016881
AF-A0A7X9BR18-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9709 1 213 GO:0005524
GO:0009058
GO:0016881
AF-A0A2V6MKT2-F1-model_v4 Mur ligase N-terminal catalytic domain-containing protein 0.9661 1 116 GO:0005524
GO:0009058
GO:0016881

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pLDDT pTM Quality
91.17 0.9 High
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Predicted Structure (AlphaFold2)

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