F076276

General Info

Members Datasets Scaffolds Average Seq Length
113 97 101 373

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221670|2644385404
Length 430
Sequence TPEQGRKSRPDVPTFRARPHGNRSATERHRSARPSPVSVQGMKTLPARSVAVVLGTRPELVKLAELIRALGPAARVVHTGQHYDDGLSGSFLDELGLPEPEYLTGVGGQPRAVQVAAALTGLDERFAAEPPLAVVVQGDTNAALSGALAANARSVPLVHVEAGLRSHDRAMPEEHNRVLIDRLADVLCAATPDNRDLLLAEGVPEERIAVTGNTVVEAVHDHLPPPEERARLLAVSGLAPDGYVLATVHRPENTDDPAALAAVLEELAALARELPVVLPLHPRTRARIETAGLLPLLDGLTVLPPAGYGTFLALARHAALIVSDSGGIQEETTVLGRPLVVVRRSTERPESLTDFADLVEPGPGIGEAARRRLAEGGLGLRRLGTLPSPYGDGTASDRIAGLLRNLIAGRDTAPSVPHRTHATATHATAA

Samples

Sample ID Description Type Environment
1 2643221670 Streptomyces sp. Root431 Isolate Unclassified
2 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
3 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
4 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
5 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
6 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
7 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
8 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
9 2928153084 Leifsonia sp. 563 Isolate Unclassified
10 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
15 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
16 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
17 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
18 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
19 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
20 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
21 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
37 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
41 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
50 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
51 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
52 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
53 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
54 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
55 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
56 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
57 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
58 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
59 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
62 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
63 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
64 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
65 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
66 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
67 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
68 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
69 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
70 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
71 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
72 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
78 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
79 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
80 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
81 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
82 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
83 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
84 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
85 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
86 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
89 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
90 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
91 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
92 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
93 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
94 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
95 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
96 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
97 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.38
Metatranscriptomes 0
Isolates 10.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.62
Nodule 0
Rhizoplane 5.31
Rhizosphere 62.83
Stem 0
Stem Tuber 0
Unclassified 21.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10022403 3300002067 Bacteria 1923
2 rootH1_10027288 3300003316 Bacteria 6731
3 rootH1_10061000 3300003316 Bacteria 8300
4 rootH2_10017532 3300003320 Bacteria 2767
5 rootH2_10080484 3300003320 Bacteria 3316
6 rootH1_10065087 3300003323 Bacteria 3157
7 Ga0055539_1000069 3300003752 Bacteria 134064
8 Ga0055533_1000037 3300003756 Bacteria 255573
9 Ga0055525_1000252 3300003759 Bacteria 52775
10 Ga0055541_1001139 3300003841 Bacteria 5962
11 Ga0070714_100197882 3300005435 Unclassified 1837
12 Ga0070710_10096891 3300005437 Bacteria 1749
13 Ga0070711_100047235 3300005439 Bacteria 2938
14 Ga0070663_100000135 3300005455 Bacteria 35361
15 Ga0070679_100328354 3300005530 Bacteria 1478
16 Ga0068855_100011832 3300005563 Bacteria 10548
17 Ga0068856_100029602 3300005614 Bacteria 5349
18 Ga0068856_100076906 3300005614 Bacteria 3307
19 Ga0068852_100013246 3300005616 Bacteria 6305
20 Ga0081539_10054734 3300005985 Bacteria 2225
21 Ga0070717_10012269 3300006028 Bacteria 6534
22 Ga0070712_100029632 3300006175 Bacteria 3671
23 Ga0075428_100070162 3300006844 Bacteria 3830
24 Ga0075430_100054351 3300006846 Bacteria 3369
25 Ga0075431_100171296 3300006847 Bacteria 2230
26 Ga0075429_100008093 3300006880 Bacteria 9139
27 Ga0105245_10008156 3300009098 Bacteria 9160
28 Ga0114129_10004327 3300009147 Bacteria 20082
29 Ga0157370_10158167 3300013104 Bacteria 2108
30 Ga0213875_10000525 3300021388 Bacteria 31657
31 Ga0209566_100047 3300025225 Bacteria 243995
32 Ga0209674_100001 3300025226 Bacteria 4013750
33 Ga0209563_100001 3300025230 Bacteria 4013775
34 Ga0209646_1000085 3300025246 Bacteria 197351
35 Ga0209677_100001 3300025253 Bacteria 4013787
36 Ga0207693_10042782 3300025915 Bacteria 3566
37 Ga0207652_10289483 3300025921 Bacteria 1478
38 Ga0207687_10015747 3300025927 Bacteria 4963
39 Ga0207664_10126578 3300025929 Unclassified 2146
40 Ga0207667_10029402 3300025949 Bacteria 5959
41 Ga0207678_10000151 3300026067 Bacteria 56877
42 Ga0207698_10012662 3300026142 Bacteria 5529
43 Ga0307511_10073440 3300030521 Bacteria 2474
44 Ga0307508_10121323 3300031616 Bacteria 2216
45 Ga0316576_10059981 3300031727 Bacteria 2786
46 Ga0307518_10032502 3300031838 Bacteria 3783
47 Ga0307507_10000005 3300033179 Bacteria 281494
48 Ga0307510_10163847 3300033180 Bacteria 1815
49 Ga0373956_0013239 3300035119 Bacteria 3431
50 Ga0373935_0294158 3300035692 Bacteria 1146
51 Ga0436364_0046443 3300037853 Bacteria 2558
52 Ga0436364_0967617 3300037853 Bacteria 71957
53 Ga0436365_0517122 3300039437 Bacteria 5500
54 Ga0436365_1385801 3300039437 Bacteria 2582
55 Ga0436365_1808921 3300039437 Bacteria 1256
56 Ga0466966_0004976 3300044684 Bacteria 8735
57 Ga0466966_0014718 3300044684 Bacteria 5176
58 Ga0466961_0004813 3300044693 Bacteria 8496
59 Ga0466961_0016674 3300044693 Bacteria 4723
60 Ga0495592_0038870 3300046454 Bacteria 3577
61 Ga0495628_0083347 3300046516 Bacteria 2482
62 Ga0495652_0001038 3300046529 Bacteria 31718
63 Ga0495645_0041133 3300046543 Bacteria 3370
64 Ga0495667_0071438 3300046559 Bacteria 2264
65 Ga0495684_0097742 3300047471 Bacteria 2221
66 Ga0496101_0011938 3300048904 Bacteria 5786
67 Ga0496102_0001322 3300048905 Bacteria 22239
68 Ga0496102_0158705 3300048905 Bacteria 2127
69 Ga0496103_0026999 3300048906 Bacteria 3477
70 Ga0496114_0034208 3300048917 Bacteria 4191
71 Ga0496114_0140375 3300048917 Bacteria 2091
72 Ga0496117_0003109 3300048920 Bacteria 19828
73 Ga0496117_0021463 3300048920 Bacteria 5222
74 Ga0496118_0039024 3300048921 Bacteria 3796
75 Ga0501036_0031091 3300049572 Bacteria 4512
76 Ga0501039_0157273 3300049575 Bacteria 1786
77 Ga0501039_0238598 3300049575 Bacteria 1430
78 Ga0501040_0172376 3300049576 Bacteria 1532
79 Ga0501042_0053928 3300049578 Bacteria 2868
80 Ga0501070_0310300 3300049586 Bacteria 1284
81 Ga0501072_0017920 3300049588 Bacteria 5445
82 Ga0501072_0182842 3300049588 Bacteria 1672
83 Ga0501073_0132717 3300049589 Bacteria 1726
84 Ga0501075_0214361 3300049591 Bacteria 1469
85 Ga0501076_0249079 3300049592 Bacteria 1453
86 Ga0501079_0094032 3300049741 Bacteria 2323
87 Ga0501080_0073106 3300049742 Bacteria 3190
88 Ga0501081_0157162 3300049743 Bacteria 1636
89 nmdc:mga09592_3329_c1 3300050508 Bacteria 12997
90 nmdc:mga0qj67_24599_c1 3300050509 Bacteria 4644
91 nmdc:mga06r32_88446_c1 3300050510 Bacteria 3024
92 Ga0495601_0002869 3300053077 Bacteria 9801
93 Ga0495601_0164610 3300053077 Bacteria 1449
94 Ga0500641_0045587 3300053096 Bacteria 1786
95 Ga0500568_0000011 3300053139 Bacteria 248947
96 Ga0500568_0000077 3300053139 Bacteria 93772
97 Ga0500616_0001250 3300053153 Bacteria 25463
98 Ga0501082_0121495 3300060353 Bacteria 2264
99 Ga0466962_0062567 3300061719 Bacteria 1777
100 Ga0530510_0009626 3300061734 Bacteria 6778
101 Ga0530510_0070251 3300061734 Bacteria 2542

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053077 Ga0495601_0164610 Ga0495601_0164610_440_1438 314
2 3300039437 Ga0436365_1808921 Ga0436365_1808921_165_1235 328
3 3300035692 Ga0373935_0294158 Ga0373935_0294158_46_1068 338
4 3300039437 Ga0436365_0517122 Ga0436365_0517122_4190_5299 338
5 3300006028 Ga0070717_10012269 Ga0070717_100122695 345
6 3300003320 rootH2_10017532 rootH2_100175322 347
7 3300013104 Ga0157370_10158167 Ga0157370_101581672 348
8 3300037853 Ga0436364_0046443 Ga0436364_0046443_1077_2162 348
9 iso_pu_bacteria 2844841374 2844843748 352
10 3300003752 Ga0055539_1000069 Ga0055539_100006947 355
11 3300003756 Ga0055533_1000037 Ga0055533_100003748 355
12 3300003759 Ga0055525_1000252 Ga0055525_10002529 355
13 3300003841 Ga0055541_1001139 Ga0055541_10011395 355
14 3300025225 Ga0209566_100047 Ga0209566_1000474 355
15 3300025226 Ga0209674_100001 Ga0209674_1000012197 355
16 3300025230 Ga0209563_100001 Ga0209563_1000012197 355
17 3300025253 Ga0209677_100001 Ga0209677_1000012197 355
18 3300053139 Ga0500568_0000077 Ga0500568_0000077_90946_92076 355
19 3300061719 Ga0466962_0062567 Ga0466962_0062567_134_1219 356
20 3300031727 Ga0316576_10059981 Ga0316576_100599812 358
21 3300035119 Ga0373956_0013239 Ga0373956_0013239_2060_3142 359
22 3300044693 Ga0466961_0016674 Ga0466961_0016674_241_1323 360
23 3300025246 Ga0209646_1000085 Ga0209646_10000853 362
24 3300005435 Ga0070714_100197882 Ga0070714_1001978821 363
25 3300005437 Ga0070710_10096891 Ga0070710_100968911 363
26 3300005439 Ga0070711_100047235 Ga0070711_1000472353 363
27 3300005530 Ga0070679_100328354 Ga0070679_1003283541 363
28 3300005614 Ga0068856_100076906 Ga0068856_1000769064 363
29 3300005985 Ga0081539_10054734 Ga0081539_100547342 363
30 3300006175 Ga0070712_100029632 Ga0070712_1000296323 363
31 3300021388 Ga0213875_10000525 Ga0213875_100005251 363
32 3300025915 Ga0207693_10042782 Ga0207693_100427825 363
33 3300025921 Ga0207652_10289483 Ga0207652_102894832 363
34 3300025929 Ga0207664_10126578 Ga0207664_101265782 363
35 3300037853 Ga0436364_0967617 Ga0436364_0967617_27799_28905 363
36 3300049586 Ga0501070_0310300 Ga0501070_0310300_45_1232 363
37 3300049589 Ga0501073_0132717 Ga0501073_0132717_158_1345 363
38 3300049742 Ga0501080_0073106 Ga0501080_0073106_538_1725 363
39 3300053153 Ga0500616_0001250 Ga0500616_0001250_14946_16094 363
40 3300006844 Ga0075428_100070162 Ga0075428_1000701624 364
41 3300006846 Ga0075430_100054351 Ga0075430_1000543513 364
42 3300006847 Ga0075431_100171296 Ga0075431_1001712962 364
43 3300006880 Ga0075429_100008093 Ga0075429_1000080937 364
44 3300009147 Ga0114129_10004327 Ga0114129_100043273 364
45 3300033179 Ga0307507_10000005 Ga0307507_1000000588 364
46 3300046559 Ga0495667_0071438 Ga0495667_0071438_797_1936 364
47 3300050508 nmdc:mga09592_3329_c1 nmdc:mga09592_3329_c1_3662_4765 364
48 3300050509 nmdc:mga0qj67_24599_c1 nmdc:mga0qj67_24599_c1_2703_3806 364
49 3300050510 nmdc:mga06r32_88446_c1 nmdc:mga06r32_88446_c1_1137_2240 364
50 3300053139 Ga0500568_0000011 Ga0500568_0000011_158423_159589 364
51 3300031838 Ga0307518_10032502 Ga0307518_100325024 365
52 3300047471 Ga0495684_0097742 Ga0495684_0097742_12_1139 365
53 3300049572 Ga0501036_0031091 Ga0501036_0031091_292_1407 366
54 3300049575 Ga0501039_0238598 Ga0501039_0238598_91_1206 366
55 3300049578 Ga0501042_0053928 Ga0501042_0053928_173_1288 366
56 3300053096 Ga0500641_0045587 Ga0500641_0045587_489_1616 366
57 3300003316 rootH1_10027288 rootH1_100272883 367
58 3300030521 Ga0307511_10073440 Ga0307511_100734402 367
59 3300031616 Ga0307508_10121323 Ga0307508_101213232 367
60 3300033180 Ga0307510_10163847 Ga0307510_101638472 367
61 3300049575 Ga0501039_0157273 Ga0501039_0157273_357_1484 367
62 3300049576 Ga0501040_0172376 Ga0501040_0172376_80_1219 367
63 3300049588 Ga0501072_0017920 Ga0501072_0017920_1693_2832 367
64 3300049588 Ga0501072_0182842 Ga0501072_0182842_288_1436 367
65 3300049591 Ga0501075_0214361 Ga0501075_0214361_314_1423 367
66 3300049592 Ga0501076_0249079 Ga0501076_0249079_160_1299 367
67 3300049741 Ga0501079_0094032 Ga0501079_0094032_283_1410 367
68 3300049743 Ga0501081_0157162 Ga0501081_0157162_17_1156 367
69 3300060353 Ga0501082_0121495 Ga0501082_0121495_276_1403 367
70 3300061734 Ga0530510_0070251 Ga0530510_0070251_300_1439 367
71 3300003316 rootH1_10061000 rootH1_100610005 368
72 3300044684 Ga0466966_0014718 Ga0466966_0014718_3940_5055 368
73 3300044693 Ga0466961_0004813 Ga0466961_0004813_4885_6000 368
74 3300061734 Ga0530510_0009626 Ga0530510_0009626_2486_3595 368
75 iso_pu_bacteria 8056447290 8056452408 368
76 3300005616 Ga0068852_100013246 Ga0068852_1000132462 369
77 3300026142 Ga0207698_10012662 Ga0207698_100126623 369
78 iso_pu_bacteria 2862178590 2862184287 369
79 iso_pu_bacteria 8056667051 8056673173 369
80 3300039437 Ga0436365_1385801 Ga0436365_1385801_1319_2488 370
81 3300048904 Ga0496101_0011938 Ga0496101_0011938_4552_5685 370
82 3300048905 Ga0496102_0001322 Ga0496102_0001322_3013_4146 370
83 3300048906 Ga0496103_0026999 Ga0496103_0026999_1579_2712 370
84 3300048917 Ga0496114_0034208 Ga0496114_0034208_2990_4123 370
85 iso_pu_bacteria 2728369276 2729906483 370
86 iso_pu_bacteria 2852663356 2852667059 370
87 iso_pu_bacteria 2875391855 2875394056 370
88 3300005563 Ga0068855_100011832 Ga0068855_10001183211 371
89 3300005614 Ga0068856_100029602 Ga0068856_1000296022 371
90 3300025949 Ga0207667_10029402 Ga0207667_100294025 371
91 iso_pu_bacteria 2919055335 2919058130 371
92 iso_pu_bacteria 2928153084 2928156607 371
93 iso_pu_bacteria 2747842429 2747955120 372
94 3300003320 rootH2_10080484 rootH2_100804843 373
95 3300003323 rootH1_10065087 rootH1_100650872 373
96 3300005455 Ga0070663_100000135 Ga0070663_10000013527 373
97 3300026067 Ga0207678_10000151 Ga0207678_1000015137 373
98 3300048905 Ga0496102_0158705 Ga0496102_0158705_910_2031 373
99 3300048917 Ga0496114_0140375 Ga0496114_0140375_107_1267 373
100 3300048920 Ga0496117_0003109 Ga0496117_0003109_4451_5572 373
101 3300048920 Ga0496117_0021463 Ga0496117_0021463_3906_5027 373
102 3300048921 Ga0496118_0039024 Ga0496118_0039024_407_1528 373
103 iso_pu_bacteria 8003314358 8003324141 373
104 3300044684 Ga0466966_0004976 Ga0466966_0004976_7153_8295 374
105 3300002067 JGI24735J21928_10022403 JGI24735J21928_100224032 375
106 3300009098 Ga0105245_10008156 Ga0105245_100081562 375
107 3300025927 Ga0207687_10015747 Ga0207687_100157474 375
108 3300046454 Ga0495592_0038870 Ga0495592_0038870_1324_2523 375
109 3300046516 Ga0495628_0083347 Ga0495628_0083347_1265_2464 375
110 3300046529 Ga0495652_0001038 Ga0495652_0001038_22254_23453 375
111 3300046543 Ga0495645_0041133 Ga0495645_0041133_1302_2501 375
112 3300053077 Ga0495601_0002869 Ga0495601_0002869_8148_9347 375
113 iso_pu_bacteria 2643221670 2644385404 375

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02350

Epimerase_2

UDP-N-acetylglucosamine 2-epimerase

65

404

0.93

PF13579

Glyco_trans_4_4

Glycosyl transferase 4-like domain

54

214

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vlc-assembly1.cif.gz_A crystal structure of udp-glcnac 2-epimerase from neisseria meningitidis bound to udp-glcnac 0.8983 7 362
3ot5-assembly5.cif.gz_C-2 2.2 angstrom resolution crystal structure of putative udp-n-acetylglucosamine 2-epimerase from listeria monocytogenes 0.8882 5 362
5enz-assembly1.cif.gz_B s. aureus mnaa-udp co-structure 0.8846 7 364
1vgv-assembly1.cif.gz_B crystal structure of udp-n-acetylglucosamine_2 epimerase 0.8843 7 362
3ot5-assembly6.cif.gz_B-3 2.2 angstrom resolution crystal structure of putative udp-n-acetylglucosamine 2-epimerase from listeria monocytogenes 0.8839 5 362
ID Description Score Start End Superfamily
af_Q58899_2_184_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9434 9 181 3.40.50.2000
af_Q58899_3_336_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9374 10 328 3.40.50.2000
af_P27828_2_186_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.913 9 180 3.40.50.2000
af_Q58899_3_336_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8943 10 328 3.40.50.2000
af_P27828_3_337_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.8914 9 328 3.90.180.10
ID Description Score Start End GO Terms
AF-A0A7V0J1P0-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) (EC 5.1.3.14) 0.9884 10 366 GO:0008761
AF-A0A7X6P566-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) (EC 5.1.3.14) 0.9857 10 364 GO:0008761
AF-A0A7X6P566-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) (EC 5.1.3.14) 0.9775 10 364 GO:0008761
AF-A0A7V0J1P0-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) (EC 5.1.3.14) 0.9749 10 366 GO:0008761
AF-A0A6N7FDW0-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) 0.9747 7 172 GO:0008761

Feature Viewer

pLDDT pTM Quality
92.97 0.9 High
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Predicted Structure (AlphaFold2)

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