F075154

General Info

Members Datasets Scaffolds Average Seq Length
113 20 112 226

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0139264|Ga0451577_0139264_898_1656
Length 252
Sequence MGISPDMDLLQFLGTLGQSPVPVIAAFFIGLMTAISPCPLATNITAIAFISKTIDNSRHTLLAGFVYMLGRMAAYVTVASVIVFSGMNIQVIALGLQHYGGLLLGPFLVACGIYLLDIIPLDRVPGGNRFSGFTSGISGRLAGRGYPGAFLLGVIFALSFCPFSAVLFFAMLIPLALAAGDPVIIPSVFAIATGIPVIGVSYLLVRGVGKCSGIVQKLGAAEVLMRRVVAGVFLVAGICSAVTVYLGWTLLL

Samples

Sample ID Description Type Environment
1 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
2 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
3 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
4 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
5 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
6 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
7 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
8 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
9 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
10 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
11 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
12 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
13 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
14 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
15 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
16 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
17 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
18 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
19 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
20 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.23
Metatranscriptomes 0.88
Isolates 0.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.23
Stem 0
Stem Tuber 0
Unclassified 1.77

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10012785 3300009147 Bacteria 11947
2 Ga0157371_10013831 3300013102 Bacteria 6113
3 Ga0157370_10467536 3300013104 Bacteria 1159
4 Ga0157372_10041858 3300013307 Bacteria 5065
5 Ga0316579_10002834 3300031691 Bacteria 6633
6 Ga0316576_10000362 3300031727 Bacteria 20452
7 Ga0316576_10005167 3300031727 Bacteria 7931
8 Ga0316576_10033606 3300031727 Bacteria 3652
9 Ga0316576_10124459 3300031727 Bacteria 1937
10 Ga0316576_10150553 3300031727 Unclassified 1753
11 Ga0316576_10193953 3300031727 Bacteria 1531
12 Ga0316576_10197972 3300031727 Bacteria 1514
13 Ga0316576_10283629 3300031727 Bacteria 1240
14 Ga0316576_10300900 3300031727 Bacteria 1199
15 Ga0316578_10000092 3300031728 Bacteria 20722
16 Ga0316578_10062304 3300031728 Bacteria 2199
17 Ga0316578_10078439 3300031728 Bacteria 1963
18 Ga0316577_10132255 3300031733 Bacteria 1404
19 Ga0316577_10408544 3300031733 Unclassified 771
20 Ga0316580_10005048 3300032139 Bacteria 3839
21 Ga0316593_10012198 3300032168 Bacteria 2518
22 Ga0316582_0055275 3300036647 Bacteria 2530
23 Ga0316582_0077958 3300036647 Bacteria 2158
24 Ga0316582_0120932 3300036647 Bacteria 1752
25 Ga0316582_0137655 3300036647 Bacteria 1644
26 Ga0316582_0412343 3300036647 Bacteria 931
27 Ga0316582_0427684 3300036647 Bacteria 912
28 Ga0316584_0000776 3300036712 Bacteria 17883
29 Ga0316584_0007014 3300036712 Bacteria 7669
30 Ga0400489_78123 3300039093 Bacteria 1328
31 Ga0400489_81407 3300039093 Bacteria 3351
32 Ga0451577_0000022 3300042876 Bacteria 437063
33 Ga0451577_0000036 3300042876 Bacteria 367683
34 Ga0451577_0000106 3300042876 Bacteria 184359
35 Ga0451577_0000417 3300042876 Bacteria 77265
36 Ga0451577_0000833 3300042876 Bacteria 46143
37 Ga0451577_0001311 3300042876 Bacteria 34023
38 Ga0451577_0003212 3300042876 Bacteria 18354
39 Ga0451577_0011823 3300042876 Bacteria 8235
40 Ga0451577_0018223 3300042876 Bacteria 6470
41 Ga0451577_0032911 3300042876 Unclassified 4673
42 Ga0451577_0041268 3300042876 Bacteria 4141
43 Ga0451577_0041650 3300042876 Bacteria 4122
44 Ga0451577_0065331 3300042876 Bacteria 3245
45 Ga0451577_0101189 3300042876 Unclassified 2575
46 Ga0451577_0106262 3300042876 Bacteria 2509
47 Ga0451577_0124529 3300042876 Bacteria 2310
48 Ga0451577_0139264 3300042876 Unclassified 2180
49 Ga0451577_0209758 3300042876 Bacteria 1759
50 Ga0451577_0223358 3300042876 Bacteria 1702
51 Ga0451577_0242526 3300042876 Bacteria 1631
52 Ga0451577_0342270 3300042876 Bacteria 1356
53 Ga0451577_0529533 3300042876 Bacteria 1070
54 Ga0451577_0541000 3300042876 Unclassified 1057
55 Ga0453683_0000399 3300044673 Bacteria 51265
56 Ga0453683_0000516 3300044673 Bacteria 43632
57 Ga0453683_0000674 3300044673 Bacteria 36279
58 Ga0453683_0059884 3300044673 Bacteria 2380
59 Ga0453683_0170819 3300044673 Bacteria 1377
60 Ga0453683_0354642 3300044673 Bacteria 942
61 Ga0453684_0000200 3300044712 Bacteria 263210
62 Ga0453684_0000244 3300044712 Bacteria 233555
63 Ga0453684_0000467 3300044712 Bacteria 161003
64 Ga0453684_0000603 3300044712 Bacteria 132340
65 Ga0453684_0000607 3300044712 Bacteria 131953
66 Ga0453684_0000991 3300044712 Bacteria 92722
67 Ga0453684_0001108 3300044712 Bacteria 84688
68 Ga0453684_0001159 3300044712 Bacteria 82240
69 Ga0453684_0001278 3300044712 Bacteria 75250
70 Ga0453684_0001623 3300044712 Bacteria 61382
71 Ga0453684_0002682 3300044712 Bacteria 42361
72 Ga0453684_0005159 3300044712 Bacteria 26271
73 Ga0453684_0005846 3300044712 Bacteria 23925
74 Ga0453684_0007675 3300044712 Bacteria 19728
75 Ga0453684_0018356 3300044712 Bacteria 10741
76 Ga0453684_0023065 3300044712 Bacteria 9192
77 Ga0453684_0030800 3300044712 Bacteria 7566
78 Ga0453684_0034072 3300044712 Bacteria 7080
79 Ga0453684_0044869 3300044712 Bacteria 5906
80 Ga0453684_0047204 3300044712 Bacteria 5715
81 Ga0453684_0081868 3300044712 Unclassified 4024
82 Ga0453684_0089613 3300044712 Unclassified 3803
83 Ga0453684_0114008 3300044712 Bacteria 3278
84 Ga0453684_0121670 3300044712 Bacteria 3149
85 Ga0453684_0131054 3300044712 Bacteria 3008
86 Ga0453684_0162834 3300044712 Unclassified 2636
87 Ga0453684_0361590 3300044712 Archaea 1634
88 Ga0453684_0406930 3300044712 Bacteria 1523
89 Ga0453684_0407604 3300044712 Bacteria 1521
90 Ga0453684_0517602 3300044712 Bacteria 1319
91 Ga0453684_0648325 3300044712 Unclassified 1153
92 Ga0453684_0986903 3300044712 Bacteria 896
93 Ga0453684_1423165 3300044712 Bacteria 718
94 Ga0451576_0000044 3300045051 Bacteria 334467
95 Ga0451576_0000397 3300045051 Bacteria 101182
96 Ga0451576_0001309 3300045051 Bacteria 43108
97 Ga0451576_0001555 3300045051 Bacteria 38669
98 Ga0451576_0001668 3300045051 Bacteria 36838
99 Ga0451576_0001915 3300045051 Bacteria 33335
100 Ga0451576_0003138 3300045051 Bacteria 23145
101 Ga0451576_0004168 3300045051 Bacteria 19031
102 Ga0451576_0006998 3300045051 Bacteria 13646
103 Ga0451576_0014531 3300045051 Bacteria 8756
104 Ga0451576_0028732 3300045051 Bacteria 5955
105 Ga0451576_0156540 3300045051 Bacteria 2377
106 Ga0451576_0159765 3300045051 Unclassified 2351
107 Ga0451576_0309735 3300045051 Bacteria 1652
108 Ga0451576_0501992 3300045051 Bacteria 1274
109 Ga0451576_0641979 3300045051 Bacteria 1115
110 Ga0451576_0649205 3300045051 Bacteria 1109
111 Ga0495608_0001497 3300046511 Bacteria 16636
112 nmdc:mga05p37_7695_c2 3300050507 Bacteria 11983

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300031727 Ga0316576_10033606 Ga0316576_100336063 192
2 3300031728 Ga0316578_10062304 Ga0316578_100623045 192
3 3300044712 Ga0453684_1423165 Ga0453684_1423165_64_693 192
4 3300042876 Ga0451577_0003212 Ga0451577_0003212_402_1100 202
5 3300044673 Ga0453683_0170819 Ga0453683_0170819_42_740 202
6 3300044712 Ga0453684_0000603 Ga0453684_0000603_56428_57126 202
7 3300045051 Ga0451576_0000397 Ga0451576_0000397_75303_76001 202
8 3300036647 Ga0316582_0120932 Ga0316582_0120932_635_1330 203
9 3300031733 Ga0316577_10408544 Ga0316577_104085441 204
10 3300044712 Ga0453684_0023065 Ga0453684_0023065_6146_6844 205
11 3300045051 Ga0451576_0156540 Ga0451576_0156540_587_1285 205
12 3300042876 Ga0451577_0001311 Ga0451577_0001311_23873_24568 207
13 3300044712 Ga0453684_0000991 Ga0453684_0000991_68146_68841 207
14 3300045051 Ga0451576_0003138 Ga0451576_0003138_9263_9958 207
15 3300036647 Ga0316582_0137655 Ga0316582_0137655_404_1093 208
16 3300042876 Ga0451577_0041268 Ga0451577_0041268_2720_3415 209
17 3300044673 Ga0453683_0354642 Ga0453683_0354642_269_931 209
18 3300044712 Ga0453684_0018356 Ga0453684_0018356_6141_6836 209
19 3300045051 Ga0451576_0641979 Ga0451576_0641979_196_891 209
20 3300042876 Ga0451577_0018223 Ga0451577_0018223_1346_2038 210
21 3300042876 Ga0451577_0032911 Ga0451577_0032911_1335_2042 210
22 3300044712 Ga0453684_0030800 Ga0453684_0030800_392_1060 210
23 3300044712 Ga0453684_0081868 Ga0453684_0081868_397_1089 210
24 3300044712 Ga0453684_0131054 Ga0453684_0131054_1498_2205 210
25 3300036647 Ga0316582_0077958 Ga0316582_0077958_264_944 214
26 3300039093 Ga0400489_78123 Ga0400489_78123_307_1005 214
27 3300042876 Ga0451577_0223358 Ga0451577_0223358_296_991 214
28 3300042876 Ga0451577_0242526 Ga0451577_0242526_444_1142 214
29 3300042876 Ga0451577_0000022 Ga0451577_0000022_202043_202738 215
30 3300044673 Ga0453683_0000516 Ga0453683_0000516_8363_9058 215
31 3300044712 Ga0453684_0000607 Ga0453684_0000607_31912_32607 215
32 3300044712 Ga0453684_0001278 Ga0453684_0001278_18114_18809 215
33 3300044712 Ga0453684_0517602 Ga0453684_0517602_555_1238 215
34 3300045051 Ga0451576_0000044 Ga0451576_0000044_99447_100142 215
35 3300031727 Ga0316576_10197972 Ga0316576_101979721 216
36 3300042876 Ga0451577_0000036 Ga0451577_0000036_193472_194158 216
37 3300042876 Ga0451577_0041650 Ga0451577_0041650_3200_3898 216
38 3300044673 Ga0453683_0000399 Ga0453683_0000399_5414_6100 216
39 3300044712 Ga0453684_0000244 Ga0453684_0000244_151016_151702 216
40 3300044712 Ga0453684_0000467 Ga0453684_0000467_111818_112516 216
41 3300044712 Ga0453684_0002682 Ga0453684_0002682_33110_33796 216
42 3300044712 Ga0453684_0648325 Ga0453684_0648325_354_1040 216
43 3300045051 Ga0451576_0001915 Ga0451576_0001915_25926_26612 216
44 3300045051 Ga0451576_0006998 Ga0451576_0006998_10291_10989 216
45 3300031691 Ga0316579_10002834 Ga0316579_100028342 217
46 3300031727 Ga0316576_10000362 Ga0316576_1000036215 217
47 3300031727 Ga0316576_10005167 Ga0316576_100051673 217
48 3300031727 Ga0316576_10124459 Ga0316576_101244594 217
49 3300031727 Ga0316576_10193953 Ga0316576_101939533 217
50 3300031727 Ga0316576_10300900 Ga0316576_103009001 217
51 3300031728 Ga0316578_10000092 Ga0316578_100000927 217
52 3300031733 Ga0316577_10132255 Ga0316577_101322552 217
53 3300032139 Ga0316580_10005048 Ga0316580_100050484 217
54 3300036647 Ga0316582_0412343 Ga0316582_0412343_149_838 217
55 3300036647 Ga0316582_0427684 Ga0316582_0427684_110_799 217
56 3300036712 Ga0316584_0000776 Ga0316584_0000776_1434_2123 217
57 3300039093 Ga0400489_81407 Ga0400489_81407_1579_2268 217
58 3300042876 Ga0451577_0209758 Ga0451577_0209758_689_1378 217
59 3300045051 Ga0451576_0001555 Ga0451576_0001555_27039_27731 217
60 3300031727 Ga0316576_10283629 Ga0316576_102836292 218
61 3300042876 Ga0451577_0000833 Ga0451577_0000833_36009_36704 218
62 3300044712 Ga0453684_0000200 Ga0453684_0000200_249912_250607 218
63 3300046511 Ga0495608_0001497 Ga0495608_0001497_13266_13970 218
64 3300036647 Ga0316582_0055275 Ga0316582_0055275_520_1215 219
65 3300042876 Ga0451577_0000106 Ga0451577_0000106_40010_40705 219
66 3300042876 Ga0451577_0106262 Ga0451577_0106262_879_1583 219
67 3300042876 Ga0451577_0342270 Ga0451577_0342270_423_1118 219
68 3300044673 Ga0453683_0059884 Ga0453683_0059884_1021_1725 219
69 3300044712 Ga0453684_0001108 Ga0453684_0001108_54603_55307 219
70 3300044712 Ga0453684_0001623 Ga0453684_0001623_11124_11819 219
71 3300044712 Ga0453684_0005159 Ga0453684_0005159_3402_4100 219
72 3300044712 Ga0453684_0005846 Ga0453684_0005846_18646_19344 219
73 3300044712 Ga0453684_0406930 Ga0453684_0406930_304_999 219
74 3300045051 Ga0451576_0001309 Ga0451576_0001309_6661_7359 219
75 3300045051 Ga0451576_0028732 Ga0451576_0028732_4806_5510 219
76 3300045051 Ga0451576_0501992 Ga0451576_0501992_329_1024 219
77 3300045051 Ga0451576_0649205 Ga0451576_0649205_147_845 219
78 iso_pu_bacteria 2920107658 2920109732 219
79 3300031727 Ga0316576_10150553 Ga0316576_101505532 220
80 3300031728 Ga0316578_10078439 Ga0316578_100784392 220
81 3300036712 Ga0316584_0007014 Ga0316584_0007014_74_775 221
82 3300042876 Ga0451577_0000417 Ga0451577_0000417_38997_39695 221
83 3300042876 Ga0451577_0011823 Ga0451577_0011823_1602_2306 221
84 3300042876 Ga0451577_0065331 Ga0451577_0065331_1192_1890 221
85 3300042876 Ga0451577_0101189 Ga0451577_0101189_660_1358 221
86 3300044712 Ga0453684_0044869 Ga0453684_0044869_2734_3432 221
87 3300044712 Ga0453684_0047204 Ga0453684_0047204_3737_4435 221
88 3300044712 Ga0453684_0121670 Ga0453684_0121670_205_906 221
89 3300044712 Ga0453684_0986903 Ga0453684_0986903_47_745 221
90 3300045051 Ga0451576_0004168 Ga0451576_0004168_10989_11690 221
91 3300045051 Ga0451576_0014531 Ga0451576_0014531_6867_7565 221
92 3300045051 Ga0451576_0159765 Ga0451576_0159765_1636_2334 221
93 3300032168 Ga0316593_10012198 Ga0316593_100121982 222
94 3300042876 Ga0451577_0124529 Ga0451577_0124529_1063_1764 222
95 3300042876 Ga0451577_0529533 Ga0451577_0529533_254_955 222
96 3300044712 Ga0453684_0007675 Ga0453684_0007675_441_1142 222
97 3300044712 Ga0453684_0034072 Ga0453684_0034072_1378_2091 222
98 3300044712 Ga0453684_0089613 Ga0453684_0089613_2129_2830 222
99 3300044712 Ga0453684_0114008 Ga0453684_0114008_2204_2908 222
100 3300042876 Ga0451577_0541000 Ga0451577_0541000_266_973 224
101 3300044673 Ga0453683_0000674 Ga0453683_0000674_7905_8612 224
102 3300044712 Ga0453684_0407604 Ga0453684_0407604_210_917 224
103 3300045051 Ga0451576_0001668 Ga0451576_0001668_13643_14350 224
104 3300013102 Ga0157371_10013831 Ga0157371_1001383110 225
105 3300013104 Ga0157370_10467536 Ga0157370_104675361 225
106 3300013307 Ga0157372_10041858 Ga0157372_100418583 225
107 3300044712 Ga0453684_0361590 Ga0453684_0361590_772_1506 226
108 3300009147 Ga0114129_10012785 Ga0114129_1001278511 227
109 3300042876 Ga0451577_0139264 Ga0451577_0139264_898_1656 227
110 3300044712 Ga0453684_0001159 Ga0453684_0001159_39779_40495 227
111 3300044712 Ga0453684_0162834 Ga0453684_0162834_145_885 227
112 3300045051 Ga0451576_0309735 Ga0451576_0309735_274_999 227
113 3300050507 nmdc:mga05p37_7695_c2 nmdc:mga05p37_7695_c2_2012_2728 227

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13386

DsbD_2

Cytochrome C biogenesis protein transmembrane region

25

239

0.78

Feature Viewer

pLDDT pTM Quality
57.56 0.47 Low
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Predicted Structure (AlphaFold2)

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