F074992

General Info

Members Datasets Scaffolds Average Seq Length
113 75 226 426

Family's Representative Sequence

Representative Sequence 3300038725|Ga0400484_18659|Ga0400484_18659_1625_3028
Length 467
Sequence MSREPIKAILIGAGQRGSDAYGPYALQNPNQIQFVAVAEPDAERRQRFSEQHNIPVECQFKSWEPLLEQPNLGQAALVCTQDQQHTGPTIAALKAGYDVLLEKPMATTLEECQLLVQTAEETGRQLHICHVLRYTSHFAKLREVIQSGVLGQIVNVHHRENVSWWHMAHSFVRGNWRNQAESSPMILANCCHDLDILIWMLDDRCQTLSSVGNLLHYRPENAPEGAPLRCLDGCPAAESCPYYAPFIYVDHIPLWRNISTNAKSLEGWATRTQLRSPELIRTLSKAIPELKRISDYRGWPSSVLTNDATPENVMAALEDGPYGRCVYHCDNDVVDHQVVNMQFESGASVTLTMHGHAHEEGRSTLIEGSKGRLYAEFKLGGSGIDVDEHHSDRHTHYDTHLSAESGHGGGDFGLMAAFVKALQTRDESTALTTARTSLESHLMAFAAEDARLDEKVVKMEDYRLGKD

Samples

Sample ID Description Type Environment
1 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
2 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
3 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
9 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
10 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
11 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
13 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
14 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
15 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
16 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
17 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
18 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
19 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
24 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
25 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
26 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
27 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
28 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
29 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
30 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
31 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
32 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
33 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
34 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
35 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
36 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
37 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
38 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
39 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
40 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
41 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
42 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
43 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
44 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
45 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
46 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
47 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
48 2671180694 Paenibacillus sp. A3 Isolate Unclassified
49 2738541295 Bacillus sp. OK085 Isolate Unclassified
50 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
51 2818991459 Paenibacillus sp. 597 Isolate Unclassified
52 2857472729 Cohnella sp. R-74144 Isolate Unclassified
53 2857581216 Bacillus sp. R-71922 Isolate Unclassified
54 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
55 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
56 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
57 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
58 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
59 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
60 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
61 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
62 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
63 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
64 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
65 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
66 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
67 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
68 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
69 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
70 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
71 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
72 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
73 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
74 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
75 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 56.64
Metatranscriptomes 0
Isolates 43.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.89
Nodule 0
Rhizoplane 1.77
Rhizosphere 49.56
Stem 0
Stem Tuber 0
Unclassified 2.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400484_18659 3300038725 Bacteria 3196
2 Ga0055538_1000426 3300003751 Bacteria 16319
3 Ga0055538_1000584 3300003751 Bacteria 12253
4 Ga0055538_1001233 3300003751 Bacteria 5304
5 Ga0055534_1013713 3300003784 Bacteria 1547
6 Ga0055531_10000043 3300003794 Bacteria 133906
7 Ga0055541_1000166 3300003841 Bacteria 31861
8 Ga0055541_1000367 3300003841 Bacteria 13977
9 Ga0055541_1001472 3300003841 Bacteria 5102
10 Ga0070675_100246952 3300005354 Bacteria 1561
11 Ga0081455_10006480 3300005937 Bacteria 12549
12 Ga0070717_10262578 3300006028 Unclassified 1528
13 Ga0075429_100022422 3300006880 Bacteria 5476
14 Ga0075436_100001153 3300006914 Bacteria 17873
15 Ga0114129_10002127 3300009147 Bacteria 27301
16 Ga0105237_10096356 3300009545 Unclassified 2949
17 Ga0157371_10002352 3300013102 Bacteria 18089
18 Ga0209784_100379 3300025224 Bacteria 20729
19 Ga0209784_100417 3300025224 Bacteria 18885
20 Ga0209784_100561 3300025224 Bacteria 13003
21 Ga0209784_101335 3300025224 Bacteria 3466
22 Ga0209566_100033 3300025225 Bacteria 332650
23 Ga0209566_100067 3300025225 Bacteria 180297
24 Ga0209566_100080 3300025225 Bacteria 156454
25 Ga0209566_100166 3300025225 Bacteria 71875
26 Ga0209566_100315 3300025225 Bacteria 43770
27 Ga0209675_1002472 3300025291 Bacteria 9482
28 Ga0209675_1005949 3300025291 Bacteria 5000
29 Ga0209025_1006399 3300025294 Bacteria 9162
30 Ga0209025_1017735 3300025294 Bacteria 4088
31 Ga0209025_1017891 3300025294 Bacteria 4060
32 Ga0209025_1020831 3300025294 Bacteria 3562
33 Ga0209025_1022381 3300025294 Bacteria 3354
34 Ga0209050_1002741 3300025298 Bacteria 14197
35 Ga0209051_1016978 3300025303 Bacteria 3268
36 Ga0209257_1000182 3300025304 Bacteria 156672
37 Ga0207706_10198174 3300025933 Bacteria 1761
38 Ga0207675_100134268 3300026118 Bacteria 2347
39 Ga0265323_10047263 3300028653 Bacteria 1540
40 Ga0316579_10007715 3300031691 Bacteria 4457
41 Ga0316576_10009203 3300031727 Bacteria 6365
42 Ga0316577_10011776 3300031733 Bacteria 4745
43 Ga0316577_10035499 3300031733 Bacteria 2786
44 Ga0316574_0015843 3300035398 Bacteria 4379
45 Ga0316582_0012160 3300036647 Bacteria 4791
46 Ga0316584_0009839 3300036712 Bacteria 6655
47 Ga0316584_0048378 3300036712 Bacteria 3177
48 Ga0316584_0054786 3300036712 Bacteria 2986
49 Ga0395899_0093439 3300037312 Bacteria 2177
50 Ga0395900_0013136 3300037418 Bacteria 8463
51 Ga0395905_0002577 3300037471 Bacteria 19967
52 Ga0316581_0007956 3300037588 Bacteria 2867
53 Ga0395901_0026040 3300038443 Bacteria 6005
54 Ga0400483_129856 3300039062 Bacteria 1597
55 Ga0400487_47522 3300039110 Bacteria 3418
56 Ga0451795_1399722 3300041456 Unclassified 2371
57 Ga0453684_0046940 3300044712 Bacteria 5736
58 Ga0451576_0061463 3300045051 Bacteria 3916
59 Ga0501034_0001342 3300049571 Bacteria 33243
60 Ga0501034_0204823 3300049571 Bacteria 1929
61 Ga0501076_0066994 3300049592 Bacteria 2867
62 Ga0501079_0164726 3300049741 Bacteria 1729
63 Ga0501080_0149583 3300049742 Bacteria 2159
64 nmdc:mga08x19_8931_c1 3300050514 Bacteria 5980
65 2563926299 2563366752 Bacteria 4961801
66 2563928784 2563366752 Bacteria 4961801
67 2587739760 2585428059 Bacteria 8696589
68 2587740356 2585428059 Bacteria 8696589
69 2587740634 2585428059 Bacteria 8696589
70 2587741235 2585428059 Bacteria 8696589
71 2587742930 2585428059 Bacteria 8696589
72 2644422861 2643221676 Bacteria 8119172
73 2644424989 2643221676 Bacteria 8119172
74 2673820660 2671180694 Bacteria 7506943
75 2673821059 2671180694 Bacteria 7506943
76 2673822703 2671180694 Bacteria 7506943
77 2738815036 2738541295 Bacteria 5730091
78 2793977938 2791355406 Bacteria 11364898
79 2819668648 2818991459 Bacteria 8736032
80 2857477293 2857472729 Bacteria 6568124
81 2857582698 2857581216 Bacteria 5522813
82 2865004745 2865002811 Bacteria 6333767
83 2884695917 2884693830 Bacteria 11273186
84 2885530664 2885526491 Bacteria 7164189
85 2888580285 2888578766 Bacteria 6743310
86 2889051041 2889049205 Bacteria 7524325
87 2895430359 2895427314 Bacteria 13147766
88 2895447763 2895442618 Bacteria 11027144
89 2904166211 2904162308 Bacteria 7086713
90 2904757613 2904755435 Bacteria 7986759
91 2904759733 2904755435 Bacteria 7986759
92 2904760876 2904755435 Bacteria 7986759
93 2904761145 2904755435 Bacteria 7986759
94 2904761258 2904755435 Bacteria 7986759
95 2907202680 2907202186 Bacteria 6632024
96 2907203151 2907202186 Bacteria 6632024
97 2907206695 2907202186 Bacteria 6632024
98 2907207637 2907202186 Bacteria 6632024
99 2919426767 2919425241 Bacteria 8055701
100 2928512338 2928510474 Bacteria 4815308
101 2929207984 2929206907 Bacteria 5918291
102 2929209214 2929206907 Bacteria 5918291
103 2980186030 2980182181 Bacteria 9454109
104 3001894899 3001892409 Bacteria 6328293
105 8007371566 8007371054 Bacteria 4849201
106 8047900403 8047893842 Bacteria 11723082
107 8048358502 8048356638 Bacteria 11044339
108 8048377343 8048369669 Bacteria 11666822
109 8048386440 8048379754 Bacteria 11877923
110 8055636076 8055632911 Bacteria 5283357
111 8055637162 8055632911 Bacteria 5283357
112 8057736306 8057733483 Bacteria 6578323
113 8057738329 8057733483 Bacteria 6578323
114 Ga0400484_18659
115 Ga0055538_1000426
116 Ga0055538_1000584
117 Ga0055538_1001233
118 Ga0055534_1013713
119 Ga0055531_10000043
120 Ga0055541_1000166
121 Ga0055541_1000367
122 Ga0055541_1001472
123 Ga0070675_100246952
124 Ga0081455_10006480
125 Ga0070717_10262578
126 Ga0075429_100022422
127 Ga0075436_100001153
128 Ga0114129_10002127
129 Ga0105237_10096356
130 Ga0157371_10002352
131 Ga0209784_100379
132 Ga0209784_100417
133 Ga0209784_100561
134 Ga0209784_101335
135 Ga0209566_100033
136 Ga0209566_100067
137 Ga0209566_100080
138 Ga0209566_100166
139 Ga0209566_100315
140 Ga0209675_1002472
141 Ga0209675_1005949
142 Ga0209025_1006399
143 Ga0209025_1017735
144 Ga0209025_1017891
145 Ga0209025_1020831
146 Ga0209025_1022381
147 Ga0209050_1002741
148 Ga0209051_1016978
149 Ga0209257_1000182
150 Ga0207706_10198174
151 Ga0207675_100134268
152 Ga0265323_10047263
153 Ga0316579_10007715
154 Ga0316576_10009203
155 Ga0316577_10011776
156 Ga0316577_10035499
157 Ga0316574_0015843
158 Ga0316582_0012160
159 Ga0316584_0009839
160 Ga0316584_0048378
161 Ga0316584_0054786
162 Ga0395899_0093439
163 Ga0395900_0013136
164 Ga0395905_0002577
165 Ga0316581_0007956
166 Ga0395901_0026040
167 Ga0400483_129856
168 Ga0400487_47522
169 Ga0451795_1399722
170 Ga0453684_0046940
171 Ga0451576_0061463
172 Ga0501034_0001342
173 Ga0501034_0204823
174 Ga0501076_0066994
175 Ga0501079_0164726
176 Ga0501080_0149583
177 nmdc:mga08x19_8931_c1
178 2563926299
179 2563928784
180 2587739760
181 2587740356
182 2587740634
183 2587741235
184 2587742930
185 2644422861
186 2644424989
187 2673820660
188 2673821059
189 2673822703
190 2738815036
191 2793977938
192 2819668648
193 2857477293
194 2857582698
195 2865004745
196 2884695917
197 2885530664
198 2888580285
199 2889051041
200 2895430359
201 2895447763
202 2904166211
203 2904757613
204 2904759733
205 2904760876
206 2904761145
207 2904761258
208 2907202680
209 2907203151
210 2907206695
211 2907207637
212 2919426767
213 2928512338
214 2929207984
215 2929209214
216 2980186030
217 3001894899
218 8007371566
219 8047900403
220 8048358502
221 8048377343
222 8048386440
223 8055636076
224 8055637162
225 8057736306
226 8057738329

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

6

130

0.9

PF02894

GFO_IDH_MocA_C

Oxidoreductase family, C-terminal alpha/beta domain

142

266

0.83

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

138

226

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bvj-assembly3.cif.gz_C udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.8973 9 410
7bvk-assembly2.cif.gz_B udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p212121) 0.8937 9 410
7bvj-assembly4.cif.gz_D udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.8892 9 410
7bvj-assembly3.cif.gz_C udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p21) 0.875 9 410
7bvk-assembly2.cif.gz_B udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p212121) 0.8715 9 410
ID Description Score Start End Superfamily
af_F1R9L8_3_129_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9839 9 134 3.40.50.720
af_Q54KI6_15_151_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9835 8 140 3.40.50.720
af_F1R9L8_3_129_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9611 9 134 3.40.50.720
af_Q54KI6_15_151_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9413 8 140 3.40.50.720
af_P77503_10_129_3.30.360.10 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.926 10 132 3.30.360.10
ID Description Score Start End GO Terms
AF-A0A7X8ECP7-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9731 8 429 GO:0000166
AF-A0A419SNV4-F1-model_v4 Oxidoreductase 0.9719 8 418 GO:0000166
AF-C3XPR8-F1-model_v4 Gfo/Idh/MocA-like oxidoreductase N-terminal domain-containing protein 0.968 9 355 GO:0000166
GO:0016491
AF-A0A0C7NPQ4-F1-model_v4 Oxidoreductase 0.9669 9 426 GO:0000166
AF-A0A7X9ED97-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9616 10 418 GO:0000166

Map