F073975

General Info

Members Datasets Scaffolds Average Seq Length
113 94 226 152

Family's Representative Sequence

Representative Sequence 3300013307|Ga0157372_10762123|Ga0157372_107621232
Length 156
Sequence VTTTTPQRSRHAYTIREAAALTGLPASTLRYYESIGVIAPVSRGASSGHRVYDDQDLDQPLVACLAATGMSVSDMRRYVANGQAGPSAARDQIALLTQQQRRLEREAEQVALRRRYVALKVDYWHAVEAGDAARAELLSGEARRLADDLKRTGGPS

Samples

Sample ID Description Type Environment
1 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
6 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
7 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
8 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
9 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
10 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
11 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
12 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
13 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
14 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
15 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
16 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
17 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
18 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
19 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
20 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
29 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
30 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
31 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
32 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
33 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
34 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
35 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
36 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
37 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
38 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
39 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
40 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
41 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
42 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
43 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
44 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
45 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
46 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
47 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
48 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
49 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
50 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
51 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
52 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
53 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
54 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
55 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
56 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
57 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
58 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
59 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
60 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
61 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
67 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
68 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
69 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
70 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
71 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
72 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
73 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
74 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
75 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
76 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
77 2643221576 Nocardioides sp. Root614 Isolate Unclassified
78 2643221590 Nocardioides sp. Root682 Isolate Unclassified
79 2643221604 Nocardioides sp. Root190 Isolate Unclassified
80 2643221617 Nocardioides sp. Root79 Isolate Unclassified
81 2643221620 Nocardioides sp. Root240 Isolate Unclassified
82 2643221641 Nocardioides sp. Root122 Isolate Unclassified
83 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
84 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
85 2738541305 Nocardioides sp. CF167 Isolate Unclassified
86 2739367898 Nocardioides sp. CF479 Isolate Unclassified
87 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
88 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
89 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
90 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
91 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
92 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
93 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
94 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.65
Metatranscriptomes 3.54
Isolates 16.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.73
Nodule 0
Rhizoplane 15.93
Rhizosphere 60.18
Stem 0
Stem Tuber 0
Unclassified 0.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157372_10762123 3300013307 Bacteria 1125
2 JGI24737J22298_10033887 3300001990 Bacteria 1585
3 rootH1_10262523 3300003323 Bacteria 1512
4 Ga0070661_100321457 3300005344 Bacteria 1209
5 Ga0070679_100722795 3300005530 Bacteria 939
6 Ga0068855_100231722 3300005563 Bacteria 2067
7 Ga0068856_100026847 3300005614 Bacteria 5615
8 Ga0068852_100288668 3300005616 Bacteria 1584
9 Ga0068852_100481858 3300005616 Bacteria 1233
10 Ga0075364_10727883 3300006051 Bacteria 677
11 Ga0105240_10058832 3300009093 Bacteria 4797
12 Ga0105245_11537394 3300009098 Bacteria 717
13 Ga0157370_10071696 3300013104 Bacteria 3269
14 Ga0157369_10007624 3300013105 Bacteria 12452
15 Ga0163162_10585222 3300013306 Bacteria 1243
16 Ga0157372_11825714 3300013307 Bacteria 699
17 Ga0157375_13054755 3300013308 Bacteria 559
18 Ga0182008_10498826 3300014497 Bacteria 669
19 Ga0206353_11688778 3300020082 Bacteria 1582
20 Ga0154015_1572319 3300020610 Bacteria 1576
21 Ga0224712_10126415 3300022467 Bacteria 1112
22 Ga0207695_10074217 3300025913 Bacteria 3463
23 Ga0207660_11529769 3300025917 Bacteria 539
24 Ga0207649_10841540 3300025920 Bacteria 717
25 Ga0207667_10572038 3300025949 Bacteria 1141
26 Ga0207658_10975092 3300025986 Bacteria 773
27 Ga0207708_11589887 3300026075 Bacteria 574
28 Ga0207702_10073495 3300026078 Bacteria 2948
29 Ga0207698_10057438 3300026142 Bacteria 3011
30 Ga0207698_10123413 3300026142 Bacteria 2197
31 Ga0307405_10553475 3300031731 Bacteria 931
32 Ga0307413_10285328 3300031824 Bacteria 1244
33 Ga0307410_10056507 3300031852 Bacteria 2669
34 Ga0307410_10071437 3300031852 Bacteria 2407
35 Ga0307409_100478617 3300031995 Bacteria 1208
36 Ga0307416_100354946 3300032002 Bacteria 1485
37 Ga0307416_100655955 3300032002 Bacteria 1134
38 Ga0307415_101454383 3300032126 Bacteria 654
39 Ga0395900_0158433 3300037418 Bacteria 2311
40 Ga0395900_0738182 3300037418 Bacteria 916
41 Ga0395898_0119545 3300037466 Bacteria 2524
42 Ga0395901_0323404 3300038443 Bacteria 1595
43 Ga0451791_1282322 3300041451 Bacteria 605
44 Ga0451793_0488736 3300041452 Bacteria 1494
45 Ga0451797_0286524 3300041453 Bacteria 991
46 Ga0451802_0947880 3300041460 Bacteria 643
47 Ga0451807_0379182 3300041486 Bacteria 571
48 Ga0451807_2650886 3300041486 Bacteria 701
49 Ga0451837_0726667 3300041494 Bacteria 591
50 Ga0466972_0054461 3300044658 Bacteria 1924
51 Ga0466972_0077359 3300044658 Bacteria 1585
52 Ga0466961_0212936 3300044693 Bacteria 1192
53 Ga0466968_0013451 3300044735 Bacteria 3219
54 Ga0466970_0044687 3300044765 Bacteria 2358
55 Ga0466970_0401176 3300044765 Bacteria 782
56 Ga0466960_0583517 3300044901 Unclassified 662
57 Ga0466959_0087942 3300045049 Bacteria 2234
58 Ga0466967_0471350 3300045976 Bacteria 1229
59 Ga0466967_0597390 3300045976 Bacteria 1089
60 Ga0495603_0360024 3300046455 Bacteria 835
61 Ga0495665_0090009 3300046531 Bacteria 1612
62 Ga0495581_0223485 3300047315 Bacteria 1101
63 Ga0496104_0118999 3300048907 Bacteria 2536
64 Ga0496104_0204388 3300048907 Bacteria 1887
65 Ga0496104_0981816 3300048907 Bacteria 749
66 Ga0496108_0423140 3300048911 Bacteria 1163
67 Ga0496109_0315193 3300048912 Bacteria 1476
68 Ga0496109_0803152 3300048912 Bacteria 879
69 Ga0496110_0258350 3300048913 Bacteria 1585
70 Ga0496111_0094660 3300048914 Bacteria 2191
71 Ga0496112_0437677 3300048915 Bacteria 1246
72 Ga0496112_1599737 3300048915 Bacteria 565
73 Ga0496113_0065897 3300048916 Bacteria 2742
74 Ga0496113_0076835 3300048916 Bacteria 2552
75 Ga0496118_0313338 3300048921 Bacteria 855
76 Ga0501317_035578 3300049533 Bacteria 741
77 Ga0501032_0841155 3300049569 Bacteria 579
78 Ga0501041_0643350 3300049577 Bacteria 678
79 Ga0501042_0562642 3300049578 Bacteria 829
80 Ga0501048_1092031 3300049582 Bacteria 574
81 Ga0501067_0033469 3300049583 Bacteria 2852
82 Ga0501069_0314674 3300049585 Bacteria 919
83 Ga0501070_1274254 3300049586 Bacteria 562
84 Ga0501035_0461570 3300049822 Bacteria 1050
85 nmdc:mga00v17_130407_c1 3300050491 Bacteria 1606
86 nmdc:mga00v17_13261_c1 3300050491 Bacteria 4570
87 nmdc:mga00v17_643878_c1 3300050491 Bacteria 682
88 nmdc:mga0yw44_135134_c1 3300050492 Bacteria 1599
89 nmdc:mga0yw44_42425_c1 3300050492 Bacteria 2713
90 nmdc:mga06z11_51606_c1 3300050494 Bacteria 2107
91 nmdc:mga04h51_11561_c1 3300050495 Bacteria 2454
92 nmdc:mga07m45_14512_c1 3300050496 Bacteria 4198
93 nmdc:mga07m45_590458_c1 3300050496 Bacteria 641
94 Ga0500641_0001828 3300053096 Bacteria 7540
95 2537897544 2537561592 Bacteria 4348607
96 2643891272 2643221576 Bacteria 5214352
97 2643960320 2643221590 Bacteria 5214697
98 2644032347 2643221604 Bacteria 5014917
99 2644098721 2643221617 Bacteria 5139111
100 2644116082 2643221620 Bacteria 5134593
101 2644229402 2643221641 Bacteria 4490190
102 2645721729 2643221961 Bacteria 3919167
103 2645724318 2643221962 Bacteria 3874254
104 2738871065 2738541305 Bacteria 4910150
105 2740168102 2739367898 Bacteria 4367674
106 2808875716 2808606365 Bacteria 4301966
107 2810364817 2808606700 Bacteria 3482157
108 2812334617 2811994874 Bacteria 5367947
109 2819425211 2818991318 Bacteria 5266538
110 2819664926 2818991458 Bacteria 4794049
111 2905929569 2905926851 Bacteria 4423176
112 2912729909 2912723979 Bacteria 8557534
113 2946004252 2946003308 Bacteria 3857229
114 Ga0157372_10762123
115 JGI24737J22298_10033887
116 rootH1_10262523
117 Ga0070661_100321457
118 Ga0070679_100722795
119 Ga0068855_100231722
120 Ga0068856_100026847
121 Ga0068852_100288668
122 Ga0068852_100481858
123 Ga0075364_10727883
124 Ga0105240_10058832
125 Ga0105245_11537394
126 Ga0157370_10071696
127 Ga0157369_10007624
128 Ga0163162_10585222
129 Ga0157372_11825714
130 Ga0157375_13054755
131 Ga0182008_10498826
132 Ga0206353_11688778
133 Ga0154015_1572319
134 Ga0224712_10126415
135 Ga0207695_10074217
136 Ga0207660_11529769
137 Ga0207649_10841540
138 Ga0207667_10572038
139 Ga0207658_10975092
140 Ga0207708_11589887
141 Ga0207702_10073495
142 Ga0207698_10057438
143 Ga0207698_10123413
144 Ga0307405_10553475
145 Ga0307413_10285328
146 Ga0307410_10056507
147 Ga0307410_10071437
148 Ga0307409_100478617
149 Ga0307416_100354946
150 Ga0307416_100655955
151 Ga0307415_101454383
152 Ga0395900_0158433
153 Ga0395900_0738182
154 Ga0395898_0119545
155 Ga0395901_0323404
156 Ga0451791_1282322
157 Ga0451793_0488736
158 Ga0451797_0286524
159 Ga0451802_0947880
160 Ga0451807_0379182
161 Ga0451807_2650886
162 Ga0451837_0726667
163 Ga0466972_0054461
164 Ga0466972_0077359
165 Ga0466961_0212936
166 Ga0466968_0013451
167 Ga0466970_0044687
168 Ga0466970_0401176
169 Ga0466960_0583517
170 Ga0466959_0087942
171 Ga0466967_0471350
172 Ga0466967_0597390
173 Ga0495603_0360024
174 Ga0495665_0090009
175 Ga0495581_0223485
176 Ga0496104_0118999
177 Ga0496104_0204388
178 Ga0496104_0981816
179 Ga0496108_0423140
180 Ga0496109_0315193
181 Ga0496109_0803152
182 Ga0496110_0258350
183 Ga0496111_0094660
184 Ga0496112_0437677
185 Ga0496112_1599737
186 Ga0496113_0065897
187 Ga0496113_0076835
188 Ga0496118_0313338
189 Ga0501317_035578
190 Ga0501032_0841155
191 Ga0501041_0643350
192 Ga0501042_0562642
193 Ga0501048_1092031
194 Ga0501067_0033469
195 Ga0501069_0314674
196 Ga0501070_1274254
197 Ga0501035_0461570
198 nmdc:mga00v17_130407_c1
199 nmdc:mga00v17_13261_c1
200 nmdc:mga00v17_643878_c1
201 nmdc:mga0yw44_135134_c1
202 nmdc:mga0yw44_42425_c1
203 nmdc:mga06z11_51606_c1
204 nmdc:mga04h51_11561_c1
205 nmdc:mga07m45_14512_c1
206 nmdc:mga07m45_590458_c1
207 Ga0500641_0001828
208 2537897544
209 2643891272
210 2643960320
211 2644032347
212 2644098721
213 2644116082
214 2644229402
215 2645721729
216 2645724318
217 2738871065
218 2740168102
219 2808875716
220 2810364817
221 2812334617
222 2819425211
223 2819664926
224 2905929569
225 2912729909
226 2946004252

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13411

MerR_1

MerR HTH family regulatory protein

13

82

0.89

PF00376

MerR

MerR family regulatory protein

14

52

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r4e-assembly1.cif.gz_A structure of glnr-dna complex 0.9269 13 85
4r4e-assembly1.cif.gz_B structure of glnr-dna complex 0.9205 13 87
7tea-assembly2.cif.gz_C crystal structure of s. aureus glnr-dna complex 0.9125 13 81
7tbo-assembly2.cif.gz_B lov2-darpin fusion : d12 0.8918 88 150
7tal-assembly1.cif.gz_A lov2-darpin fusion : d4_deltadarp 0.8794 89 152
ID Description Score Start End Superfamily
1z0kD00 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;Rabenosyn, Rab binding domain 1.011 113 153 4.10.860.20
3v1bA00 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;Rabenosyn, Rab binding domain 0.9957 113 153 4.10.860.20
3v1bB00 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;Rabenosyn, Rab binding domain 0.9735 112 154 4.10.860.20
1z0jB00 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;Rabenosyn, Rab binding domain 0.9343 110 157 4.10.860.20
4b6xB00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.9282 105 152 1.20.58.90
ID Description Score Start End GO Terms
AF-A0A4Q4D7Q9-F1-model_v4 MerR family transcriptional regulator 0.9406 11 90 GO:0003677
GO:0003700
AF-A0A2P2CGT5-F1-model_v4 MerR family transcriptional regulator 0.9404 7 152 GO:0003677
GO:0003700
AF-A0A7K1LK49-F1-model_v4 MerR family transcriptional regulator 0.9379 5 152 GO:0003677
GO:0003700
AF-A0A6B3EHC8-F1-model_v4 MerR family transcriptional regulator 0.9308 5 154 GO:0003677
GO:0003700
AF-A0A542T2M0-F1-model_v4 deleted 0.9271 19 153

Map