F051315

General Info

Members Datasets Scaffolds Average Seq Length
108 97 96 156

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2671180139|2671692835
Length 186
Sequence SSPMLRNDHSVSDPSDSRPLPDIGAGPMSVAFTREEDVEATAANLPDRPISPHRNLVTPEGLAQLEAALAEARAAYQAAKAAEGISSDRTAMARATRDLRYYTARRASAEPVGPPPSHHVAVFGSTVTIDREDGRRQVFRIVGEDEADPARGSISYVSPLARALTGKAVGDEVTIAGGEVEIVEIA

Samples

Sample ID Description Type Environment
1 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
2 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
3 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
4 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
5 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
6 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
7 2818991435 Caulobacter henricii 536 Isolate Unclassified
8 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
9 2842694124 Methylopila sp. R-72369 Isolate Unclassified
10 2917554339 Chthonobacter rhizosphaerae yh7-1 Isolate Rhizosphere
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
36 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
37 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
46 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
48 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
49 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
50 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
51 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
52 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
53 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
54 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
55 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
56 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
57 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
58 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
59 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
60 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
61 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
62 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
63 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
64 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
65 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
66 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
67 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
72 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
73 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
74 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
75 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
76 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
77 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
78 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
79 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
80 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
81 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
82 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
83 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
84 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
85 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
86 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
87 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
88 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
89 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
90 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
91 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
92 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
93 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
94 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
95 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
96 641522639 Methylobacterium sp. 4-46 Isolate Nodule
97 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 88.89
Metatranscriptomes 0
Isolates 11.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.15
Nodule 4.63
Rhizoplane 1.85
Rhizosphere 55.56
Stem 0
Stem Tuber 0
Unclassified 14.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10049051 3300003320 Bacteria 5709
2 rootH2_10085308 3300003320 Bacteria 3291
3 Ga0070670_100000020 3300005331 Bacteria 215458
4 Ga0070668_100015788 3300005347 Bacteria 5651
5 Ga0070667_100103001 3300005367 Bacteria 2467
6 Ga0070714_100595793 3300005435 Bacteria 1061
7 Ga0070705_100296090 3300005440 Bacteria 1157
8 Ga0068867_101160449 3300005459 Bacteria 708
9 Ga0068853_100201185 3300005539 Bacteria 1813
10 Ga0070696_100248965 3300005546 Bacteria 1343
11 Ga0070665_100513492 3300005548 Bacteria 1210
12 Ga0068859_100204620 3300005617 Bacteria 2059
13 Ga0068863_100228358 3300005841 Bacteria 1795
14 Ga0068862_100514810 3300005844 Bacteria 1138
15 Ga0081455_10189364 3300005937 Bacteria 1551
16 Ga0070717_10304206 3300006028 Bacteria 1418
17 Ga0075365_10131101 3300006038 Bacteria 1735
18 Ga0075364_10785560 3300006051 Bacteria 649
19 Ga0097620_100204614 3300006931 Bacteria 2059
20 Ga0079104_1006074 3300006946 Bacteria 4668
21 Ga0105240_10001325 3300009093 Bacteria 42683
22 Ga0105240_11669077 3300009093 Bacteria 666
23 Ga0105241_10833281 3300009174 Bacteria 852
24 Ga0105242_10999270 3300009176 Bacteria 844
25 Ga0105237_11088429 3300009545 Bacteria 806
26 Ga0157374_10680047 3300013296 Bacteria 1042
27 Ga0183365_10001 3300015684 Bacteria 2090444
28 Ga0209233_1051628 3300025261 Bacteria 833
29 Ga0207647_10304866 3300025904 Bacteria 906
30 Ga0207705_10932625 3300025909 Bacteria 672
31 Ga0207695_10000722 3300025913 Bacteria 64180
32 Ga0207694_10614620 3300025924 Bacteria 914
33 Ga0207650_10092257 3300025925 Bacteria 2316
34 Ga0207639_10966457 3300026041 Bacteria 797
35 Ga0207641_10382690 3300026088 Bacteria 1348
36 Ga0207648_10991381 3300026089 Bacteria 787
37 Ga0209281_1026949 3300027111 Bacteria 1057
38 Ga0268265_12215011 3300028380 Bacteria 556
39 Ga0307517_10001826 3300028786 Bacteria 34938
40 Ga0265327_10000110 3300031251 Bacteria 181251
41 Ga0307513_10004314 3300031456 Bacteria 19007
42 Ga0307513_10006257 3300031456 Bacteria 15596
43 Ga0307409_100750229 3300031995 Bacteria 980
44 Ga0307510_10003000 3300033180 Bacteria 19429
45 Ga0373937_0418019 3300036401 Unclassified 1273
46 Ga0395900_0301465 3300037418 Bacteria 1588
47 Ga0395901_0817671 3300038443 Bacteria 919
48 Ga0439465_0041786 3300041413 Bacteria 1485
49 Ga0451853_3465761 3300041512 Bacteria 710
50 Ga0439446_0013055 3300042156 Bacteria 2275
51 Ga0466963_0356854 3300044694 Bacteria 1030
52 Ga0495638_0048090 3300046460 Bacteria 2671
53 Ga0495663_0068990 3300046525 Bacteria 1123
54 Ga0495625_0211359 3300046660 Bacteria 1275
55 Ga0495660_0229378 3300046810 Bacteria 871
56 Ga0495672_0364808 3300047320 Bacteria 667
57 Ga0496100_0982134 3300048903 Unclassified 664
58 Ga0496112_1116615 3300048915 Bacteria 706
59 Ga0496125_0065730 3300048928 Bacteria 2871
60 Ga0501031_0425924 3300049568 Bacteria 858
61 Ga0501034_0017903 3300049571 Bacteria 7266
62 Ga0501034_0035238 3300049571 Bacteria 5074
63 Ga0501034_0971104 3300049571 Bacteria 734
64 Ga0501043_0784726 3300049579 Bacteria 690
65 Ga0501047_1171099 3300049581 Bacteria 582
66 Ga0501070_0681172 3300049586 Bacteria 814
67 Ga0501080_0064518 3300049742 Bacteria 3406
68 Ga0501083_0000802 3300049744 Bacteria 20586
69 Ga0501083_0383226 3300049744 Bacteria 914
70 Ga0501044_0035017 3300049823 Bacteria 5260
71 Ga0501044_0275260 3300049823 Bacteria 1618
72 Ga0501044_0538421 3300049823 Bacteria 1066
73 nmdc:mga03683_538015_c1 3300050489 Bacteria 568
74 nmdc:mga00v17_583447_c1 3300050491 Bacteria 721
75 nmdc:mga06r32_1700340_c1 3300050510 Unclassified 568
76 Ga0500635_0000546 3300053080 Bacteria 10062
77 Ga0500643_001955 3300053087 Bacteria 11166
78 Ga0500643_008646 3300053087 Bacteria 3981
79 Ga0500641_0001204 3300053096 Bacteria 9226
80 Ga0500555_002438 3300053103 Bacteria 5388
81 Ga0500556_0024675 3300053104 Bacteria 1978
82 Ga0500562_000825 3300053108 Bacteria 7549
83 Ga0500593_297618 3300053117 Bacteria 518
84 Ga0500608_000225 3300053122 Bacteria 22251
85 Ga0500608_307138 3300053122 Bacteria 585
86 Ga0500642_0240912 3300053130 Bacteria 833
87 Ga0500559_0000001 3300053136 Bacteria 325464
88 Ga0500577_0000752 3300053142 Bacteria 8335
89 Ga0500616_0012956 3300053153 Bacteria 4859
90 Ga0500622_0004165 3300053156 Bacteria 9250
91 Ga0500639_224832 3300053163 Bacteria 779
92 Ga0500636_0005421 3300053177 Bacteria 7282
93 Ga0500611_006137 3300053727 Bacteria 1734
94 Ga0500645_000737 3300053730 Bacteria 20158
95 Ga0500645_001383 3300053730 Bacteria 12397
96 Ga0501082_0941882 3300060353 Bacteria 755

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050489 nmdc:mga03683_538015_c1 nmdc:mga03683_538015_c1_54_533 141
2 3300005459 Ga0068867_101160449 Ga0068867_1011604492 145
3 3300025909 Ga0207705_10932625 Ga0207705_109326251 145
4 3300026089 Ga0207648_10991381 Ga0207648_109913811 145
5 3300005440 Ga0070705_100296090 Ga0070705_1002960902 146
6 3300005546 Ga0070696_100248965 Ga0070696_1002489653 146
7 3300006946 Ga0079104_1006074 Ga0079104_10060742 146
8 3300009093 Ga0105240_10001325 Ga0105240_1000132515 146
9 3300025913 Ga0207695_10000722 Ga0207695_1000072215 146
10 3300025924 Ga0207694_10614620 Ga0207694_106146201 146
11 3300027111 Ga0209281_1026949 Ga0209281_10269492 146
12 3300049568 Ga0501031_0425924 Ga0501031_0425924_276_755 146
13 3300049586 Ga0501070_0681172 Ga0501070_0681172_163_642 146
14 3300049823 Ga0501044_0275260 Ga0501044_0275260_538_1017 146
15 3300009545 Ga0105237_11088429 Ga0105237_110884292 147
16 3300033180 Ga0307510_10003000 Ga0307510_1000300019 148
17 3300013296 Ga0157374_10680047 Ga0157374_106800472 149
18 iso_pu_bacteria 2545555834 2545677884 149
19 iso_pu_bacteria 641522639 641642590 149
20 iso_pu_bacteria 643348564 643600553 149
21 3300031456 Ga0307513_10006257 Ga0307513_100062575 150
22 3300049571 Ga0501034_0971104 Ga0501034_0971104_229_684 151
23 3300049744 Ga0501083_0000802 Ga0501083_0000802_8000_8455 151
24 3300060353 Ga0501082_0941882 Ga0501082_0941882_10_465 151
25 3300005539 Ga0068853_100201185 Ga0068853_1002011852 152
26 3300005937 Ga0081455_10189364 Ga0081455_101893643 152
27 3300026041 Ga0207639_10966457 Ga0207639_109664571 152
28 3300048915 Ga0496112_1116615 Ga0496112_1116615_21_500 152
29 3300049742 Ga0501080_0064518 Ga0501080_0064518_822_1280 152
30 3300049744 Ga0501083_0383226 Ga0501083_0383226_400_858 152
31 3300050510 nmdc:mga06r32_1700340_c1 nmdc:mga06r32_1700340_c1_76_534 152
32 3300005331 Ga0070670_100000020 Ga0070670_10000002036 153
33 3300005435 Ga0070714_100595793 Ga0070714_1005957932 153
34 3300006028 Ga0070717_10304206 Ga0070717_103042063 153
35 3300028786 Ga0307517_10001826 Ga0307517_1000182616 153
36 3300031456 Ga0307513_10004314 Ga0307513_100043149 153
37 3300036401 Ga0373937_0418019 Ga0373937_0418019_129_590 153
38 3300046460 Ga0495638_0048090 Ga0495638_0048090_1284_1769 153
39 3300046660 Ga0495625_0211359 Ga0495625_0211359_584_1069 153
40 3300048903 Ga0496100_0982134 Ga0496100_0982134_85_546 153
41 3300053727 Ga0500611_006137 Ga0500611_006137_107_592 153
42 3300005367 Ga0070667_100103001 Ga0070667_1001030012 154
43 3300006038 Ga0075365_10131101 Ga0075365_101311013 154
44 3300044694 Ga0466963_0356854 Ga0466963_0356854_43_507 154
45 iso_pu_bacteria 2643221598 2644001838 155
46 iso_pu_bacteria 2643221614 2644085238 155
47 iso_pu_bacteria 2643221661 2644342790 155
48 iso_pu_bacteria 2643221666 2644366090 155
49 iso_pu_bacteria 2818991435 2819539845 155
50 iso_pu_bacteria 2818991454 2819648875 155
51 iso_pu_bacteria 2842694124 2842695855 155
52 iso_pu_bacteria 2917554339 2917556532 155
53 3300003320 rootH2_10049051 rootH2_100490515 159
54 3300003320 rootH2_10085308 rootH2_100853083 159
55 3300005347 Ga0070668_100015788 Ga0070668_1000157883 159
56 3300005548 Ga0070665_100513492 Ga0070665_1005134922 159
57 3300005617 Ga0068859_100204620 Ga0068859_1002046202 159
58 3300005841 Ga0068863_100228358 Ga0068863_1002283583 159
59 3300005844 Ga0068862_100514810 Ga0068862_1005148102 159
60 3300006051 Ga0075364_10785560 Ga0075364_107855601 159
61 3300006931 Ga0097620_100204614 Ga0097620_1002046143 159
62 3300009093 Ga0105240_11669077 Ga0105240_116690771 159
63 3300009174 Ga0105241_10833281 Ga0105241_108332812 159
64 3300009176 Ga0105242_10999270 Ga0105242_109992702 159
65 3300015684 Ga0183365_10001 Ga0183365_10001986 159
66 3300025261 Ga0209233_1051628 Ga0209233_10516282 159
67 3300025904 Ga0207647_10304866 Ga0207647_103048662 159
68 3300025925 Ga0207650_10092257 Ga0207650_100922572 159
69 3300026088 Ga0207641_10382690 Ga0207641_103826902 159
70 3300028380 Ga0268265_12215011 Ga0268265_122150111 159
71 3300031251 Ga0265327_10000110 Ga0265327_10000110152 159
72 3300031995 Ga0307409_100750229 Ga0307409_1007502292 159
73 3300037418 Ga0395900_0301465 Ga0395900_0301465_349_831 159
74 3300038443 Ga0395901_0817671 Ga0395901_0817671_65_547 159
75 3300041413 Ga0439465_0041786 Ga0439465_0041786_308_793 159
76 3300041512 Ga0451853_3465761 Ga0451853_3465761_129_608 159
77 3300042156 Ga0439446_0013055 Ga0439446_0013055_1481_1966 159
78 3300046525 Ga0495663_0068990 Ga0495663_0068990_131_616 159
79 3300046810 Ga0495660_0229378 Ga0495660_0229378_24_503 159
80 3300047320 Ga0495672_0364808 Ga0495672_0364808_142_621 159
81 3300048928 Ga0496125_0065730 Ga0496125_0065730_1478_1957 159
82 3300049571 Ga0501034_0017903 Ga0501034_0017903_6497_7036 159
83 3300049571 Ga0501034_0035238 Ga0501034_0035238_1827_2306 159
84 3300049579 Ga0501043_0784726 Ga0501043_0784726_59_538 159
85 3300049581 Ga0501047_1171099 Ga0501047_1171099_32_511 159
86 3300049823 Ga0501044_0035017 Ga0501044_0035017_1616_2095 159
87 3300049823 Ga0501044_0538421 Ga0501044_0538421_577_1056 159
88 3300050491 nmdc:mga00v17_583447_c1 nmdc:mga00v17_583447_c1_207_692 159
89 3300053080 Ga0500635_0000546 Ga0500635_0000546_5818_6297 159
90 3300053087 Ga0500643_001955 Ga0500643_001955_9737_10237 159
91 3300053087 Ga0500643_008646 Ga0500643_008646_1895_2383 159
92 3300053096 Ga0500641_0001204 Ga0500641_0001204_5119_5598 159
93 3300053103 Ga0500555_002438 Ga0500555_002438_2738_3217 159
94 3300053104 Ga0500556_0024675 Ga0500556_0024675_217_696 159
95 3300053108 Ga0500562_000825 Ga0500562_000825_4516_5004 159
96 3300053117 Ga0500593_297618 Ga0500593_297618_17_496 159
97 3300053122 Ga0500608_000225 Ga0500608_000225_13770_14264 159
98 3300053122 Ga0500608_307138 Ga0500608_307138_61_555 159
99 3300053130 Ga0500642_0240912 Ga0500642_0240912_55_534 159
100 3300053136 Ga0500559_0000001 Ga0500559_0000001_236885_237364 159
101 3300053142 Ga0500577_0000752 Ga0500577_0000752_6749_7234 159
102 3300053153 Ga0500616_0012956 Ga0500616_0012956_3336_3836 159
103 3300053156 Ga0500622_0004165 Ga0500622_0004165_3796_4281 159
104 3300053163 Ga0500639_224832 Ga0500639_224832_127_606 159
105 3300053177 Ga0500636_0005421 Ga0500636_0005421_3257_3739 159
106 3300053730 Ga0500645_000737 Ga0500645_000737_12441_12929 159
107 3300053730 Ga0500645_001383 Ga0500645_001383_8646_9146 159
108 iso_pu_bacteria 2671180139 2671692835 159

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01272

GreA_GreB

Transcription elongation factor, GreA/GreB, C-term

116

186

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6j22-assembly1.cif.gz_A crystal structure of bi-functional enzyme 0.9252 33 81
4b6x-assembly1.cif.gz_A crystal structure of in planta processed avrrps4 0.9179 33 80
5zwl-assembly1.cif.gz_E crystal structure of the gamma - epsilon complex of photosynthetic cyanobacterial f1-atpase 0.9084 35 81
3tul-assembly5.cif.gz_C crystal structure of n-terminal region of type iii secretion major translocator sipb (residues 82-226) 0.8932 33 80
6q56-assembly4.cif.gz_D crystal structure of the b. subtilis m1a22 trna methyltransferase trmk 0.8882 35 79
ID Description Score Start End Superfamily
af_Q54NT2_1_235_1.20.1270.60 Mainly Alpha;Up-down Bundle;Substrate Binding Domain Of Dnak; Chain:A; Domain 2;Arfaptin homology (AH) domain/BAR domain 0.9444 33 81 1.20.1270.60
af_Q2FXW7_79_158_3.10.50.30 Alpha Beta;Roll;Chitinase A; domain 3;Transcription elongation factor, GreA/GreB, C-terminal domain 0.9398 90 159 3.10.50.30
1grjA02 Alpha Beta;Roll;Chitinase A; domain 3;Transcription elongation factor, GreA/GreB, C-terminal domain 0.9248 88 159 3.10.50.30
4b6xA00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.9179 33 80 1.20.58.90
af_Q7YWP8_11_191_1.20.1270.60 Mainly Alpha;Up-down Bundle;Substrate Binding Domain Of Dnak; Chain:A; Domain 2;Arfaptin homology (AH) domain/BAR domain 0.914 36 80 1.20.1270.60
ID Description Score Start End GO Terms
AF-A0A519JJQ2-F1-model_v4 Transcription elongation factor 0.9857 94 159 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-V4NXI6-F1-model_v4 Transcription elongation factor 0.9776 1 159 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A0F2PJK9-F1-model_v4 Transcription elongation factor 0.9749 18 159 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A519JJQ2-F1-model_v4 Transcription elongation factor 0.9712 94 159 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A537P695-F1-model_v4 Transcription elongation factor GreA/GreB C-terminal domain-containing protein 0.9631 65 159 GO:0003677
GO:0006354
GO:0032784
GO:0070063

Feature Viewer

pLDDT pTM Quality
89.47 0.78 High
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Predicted Structure (AlphaFold2)

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