F050166

General Info

Members Datasets Scaffolds Average Seq Length
108 29 216 367

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0097114|Ga0453684_0097114_1758_3026
Length 422
Sequence MKERLEVNRDFQLRNSFLDSRLASVYKYESVRVSFLSKTLNYGGNTMKRLLTVAIAGIVMVFGMTTMGIAADTIKLGIAGAHTGDLASYGLPTIKAAELVVKEINAKGGILGKQVELMPEDDVCKPEVATNTATKLVSGNVNVVLGHICSGATKAALGIYKNAKLVVMSPSATNPELTQSGEYPNFFRTIASDDMQAKLEVEFALNTLKFKKIAVLHDKGDYGKGLAEFAKKFLEQAKAKDAKIEVVLYEGITPGAVDYSAIVQKIKQSNAEAVIFGGYHPEASKLVMQMRQKKMKTVFISDDGVKDDTFIKVAGKDAEGVYATGPKDTTKNPMAVKAINDHKEAYKSDPGAFFLNAYAATLALLNAIQKSGGTDYDAIVKALRTEDVETPLGKIKFDERGDAIGIGFSVYQVKNGAYVELK

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
3 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
4 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
5 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
6 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
7 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
8 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
9 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
10 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
11 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
12 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
13 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
14 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
15 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
16 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
17 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
18 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
19 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
20 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
21 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
22 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
23 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
24 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
25 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
26 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
27 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
28 2523533628 Maridesulfovibrio zosterae DSM 11974 Isolate Rhizosphere
29 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 85.19
Metatranscriptomes 12.96
Isolates 1.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 74.07
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0097114 3300044712 Bacteria 3617
2 Ga0316575_10008713 3300031665 Bacteria 3700
3 Ga0316575_10016844 3300031665 Bacteria 2769
4 Ga0316579_10000677 3300031691 Bacteria 11543
5 Ga0316579_10008420 3300031691 Bacteria 4297
6 Ga0316579_10013610 3300031691 Bacteria 3501
7 Ga0316576_10006821 3300031727 Bacteria 7137
8 Ga0316576_10013460 3300031727 Bacteria 5439
9 Ga0316576_10029545 3300031727 Bacteria 3876
10 Ga0316576_10051148 3300031727 Bacteria 3006
11 Ga0316576_10251232 3300031727 Bacteria 1327
12 Ga0316578_10005024 3300031728 Bacteria 6348
13 Ga0316578_10018574 3300031728 Bacteria 3813
14 Ga0316578_10022736 3300031728 Bacteria 3501
15 Ga0316578_10035500 3300031728 Bacteria 2866
16 Ga0316577_10002899 3300031733 Bacteria 8575
17 Ga0316577_10012016 3300031733 Bacteria 4707
18 Ga0316577_10012657 3300031733 Bacteria 4600
19 Ga0316577_10028992 3300031733 Bacteria 3090
20 Ga0316577_10033255 3300031733 Bacteria 2880
21 Ga0316583_10005381 3300032133 Bacteria 4595
22 Ga0316583_10010692 3300032133 Bacteria 3308
23 Ga0316583_10017650 3300032133 Bacteria 2566
24 Ga0316585_10000106 3300032137 Bacteria 15262
25 Ga0316585_10006952 3300032137 Bacteria 3248
26 Ga0316580_10001595 3300032139 Bacteria 5992
27 Ga0316580_10002268 3300032139 Bacteria 5260
28 Ga0316592_1005857 3300033524 Bacteria 2349
29 Ga0316592_1011942 3300033524 Bacteria 1774
30 Ga0316592_1020061 3300033524 Bacteria 1417
31 Ga0316592_1024226 3300033524 Bacteria 1305
32 Ga0316592_1026070 3300033524 Bacteria 1261
33 Ga0316588_1001067 3300033528 Bacteria 4333
34 Ga0316588_1024274 3300033528 Bacteria 1394
35 Ga0316588_1026368 3300033528 Bacteria 1346
36 Ga0316588_1033903 3300033528 Bacteria 1205
37 Ga0316587_1011465 3300033529 Bacteria 1431
38 Ga0316587_1018553 3300033529 Bacteria 1172
39 Ga0316596_1000566 3300033541 Bacteria 6464
40 Ga0316596_1009479 3300033541 Bacteria 2337
41 Ga0316596_1015263 3300033541 Bacteria 1913
42 Ga0316574_0000518 3300035398 Bacteria 15750
43 Ga0316574_0009076 3300035398 Bacteria 5556
44 Ga0316574_0047182 3300035398 Bacteria 2673
45 Ga0316582_0005025 3300036647 Bacteria 6759
46 Ga0316582_0021011 3300036647 Bacteria 3848
47 Ga0316582_0029463 3300036647 Bacteria 3335
48 Ga0316582_0032396 3300036647 Bacteria 3202
49 Ga0316582_0062048 3300036647 Bacteria 2399
50 Ga0316582_0206471 3300036647 Bacteria 1341
51 Ga0316584_0019233 3300036712 Bacteria 4936
52 Ga0316584_0027260 3300036712 Bacteria 4204
53 Ga0316584_0046604 3300036712 Bacteria 3238
54 Ga0316584_0068034 3300036712 Bacteria 2669
55 Ga0316584_0200524 3300036712 Bacteria 1472
56 Ga0400484_02908 3300038725 Bacteria 3980
57 Ga0400484_03285 3300038725 Bacteria 2603
58 Ga0400484_11046 3300038725 Bacteria 3752
59 Ga0400484_17864 3300038725 Bacteria 22637
60 Ga0400490_33197 3300038726 Bacteria 2443
61 Ga0400490_49563 3300038726 Bacteria 8030
62 Ga0400490_60236 3300038726 Bacteria 53180
63 Ga0400491_22587 3300038727 Bacteria 5737
64 Ga0400485_20797 3300038735 Bacteria 24782
65 Ga0400485_22352 3300038735 Bacteria 5089
66 Ga0400488_06233 3300038741 Bacteria 4985
67 Ga0400488_28191 3300038741 Bacteria 2806
68 Ga0400488_42964 3300038741 Bacteria 6692
69 Ga0400488_44034 3300038741 Bacteria 3396
70 Ga0400488_46219 3300038741 Bacteria 6519
71 Ga0400486_20466 3300038742 Bacteria 33975
72 Ga0400486_25600 3300038742 Bacteria 31060
73 Ga0400483_052287 3300039062 Bacteria 6799
74 Ga0400483_054676 3300039062 Bacteria 5858
75 Ga0400483_071935 3300039062 Bacteria 165886
76 Ga0400483_225905 3300039062 Bacteria 6535
77 Ga0400483_262487 3300039062 Bacteria 2830
78 Ga0400483_283864 3300039062 Bacteria 7251
79 Ga0400489_20019 3300039093 Bacteria 48244
80 Ga0400489_25505 3300039093 Bacteria 21940
81 Ga0400489_51891 3300039093 Bacteria 9429
82 Ga0400489_64803 3300039093 Bacteria 5018
83 Ga0451577_0001414 3300042876 Bacteria 32017
84 Ga0451577_0002603 3300042876 Bacteria 21216
85 Ga0451577_0010615 3300042876 Bacteria 8783
86 Ga0451577_0044396 3300042876 Bacteria 3979
87 Ga0451577_0114866 3300042876 Bacteria 2410
88 Ga0451577_0168247 3300042876 Bacteria 1975
89 Ga0451577_0244323 3300042876 Bacteria 1625
90 Ga0453683_0114210 3300044673 Bacteria 1699
91 Ga0453684_0000151 3300044712 Bacteria 306256
92 Ga0453684_0000239 3300044712 Bacteria 235992
93 Ga0453684_0000504 3300044712 Bacteria 152594
94 Ga0453684_0006155 3300044712 Bacteria 23081
95 Ga0453684_0033024 3300044712 Bacteria 7223
96 Ga0453684_0061657 3300044712 Bacteria 4812
97 Ga0453684_0066886 3300044712 Bacteria 4573
98 Ga0453684_0105420 3300044712 Bacteria 3438
99 Ga0453684_0133977 3300044712 Bacteria 2969
100 Ga0453684_0157949 3300044712 Bacteria 2686
101 Ga0453684_0314707 3300044712 Bacteria 1775
102 Ga0453684_0395221 3300044712 Bacteria 1549
103 Ga0451576_0006725 3300045051 Bacteria 14004
104 Ga0451576_0065096 3300045051 Bacteria 3795
105 Ga0451576_0085345 3300045051 Bacteria 3284
106 Ga0451576_0260729 3300045051 Bacteria 1812
107 2524000865 2523533628 Bacteria 4098242
108 2740993607 2740891818 Bacteria 6711283
109 Ga0453684_0097114
110 Ga0316575_10008713
111 Ga0316575_10016844
112 Ga0316579_10000677
113 Ga0316579_10008420
114 Ga0316579_10013610
115 Ga0316576_10006821
116 Ga0316576_10013460
117 Ga0316576_10029545
118 Ga0316576_10051148
119 Ga0316576_10251232
120 Ga0316578_10005024
121 Ga0316578_10018574
122 Ga0316578_10022736
123 Ga0316578_10035500
124 Ga0316577_10002899
125 Ga0316577_10012016
126 Ga0316577_10012657
127 Ga0316577_10028992
128 Ga0316577_10033255
129 Ga0316583_10005381
130 Ga0316583_10010692
131 Ga0316583_10017650
132 Ga0316585_10000106
133 Ga0316585_10006952
134 Ga0316580_10001595
135 Ga0316580_10002268
136 Ga0316592_1005857
137 Ga0316592_1011942
138 Ga0316592_1020061
139 Ga0316592_1024226
140 Ga0316592_1026070
141 Ga0316588_1001067
142 Ga0316588_1024274
143 Ga0316588_1026368
144 Ga0316588_1033903
145 Ga0316587_1011465
146 Ga0316587_1018553
147 Ga0316596_1000566
148 Ga0316596_1009479
149 Ga0316596_1015263
150 Ga0316574_0000518
151 Ga0316574_0009076
152 Ga0316574_0047182
153 Ga0316582_0005025
154 Ga0316582_0021011
155 Ga0316582_0029463
156 Ga0316582_0032396
157 Ga0316582_0062048
158 Ga0316582_0206471
159 Ga0316584_0019233
160 Ga0316584_0027260
161 Ga0316584_0046604
162 Ga0316584_0068034
163 Ga0316584_0200524
164 Ga0400484_02908
165 Ga0400484_03285
166 Ga0400484_11046
167 Ga0400484_17864
168 Ga0400490_33197
169 Ga0400490_49563
170 Ga0400490_60236
171 Ga0400491_22587
172 Ga0400485_20797
173 Ga0400485_22352
174 Ga0400488_06233
175 Ga0400488_28191
176 Ga0400488_42964
177 Ga0400488_44034
178 Ga0400488_46219
179 Ga0400486_20466
180 Ga0400486_25600
181 Ga0400483_052287
182 Ga0400483_054676
183 Ga0400483_071935
184 Ga0400483_225905
185 Ga0400483_262487
186 Ga0400483_283864
187 Ga0400489_20019
188 Ga0400489_25505
189 Ga0400489_51891
190 Ga0400489_64803
191 Ga0451577_0001414
192 Ga0451577_0002603
193 Ga0451577_0010615
194 Ga0451577_0044396
195 Ga0451577_0114866
196 Ga0451577_0168247
197 Ga0451577_0244323
198 Ga0453683_0114210
199 Ga0453684_0000151
200 Ga0453684_0000239
201 Ga0453684_0000504
202 Ga0453684_0006155
203 Ga0453684_0033024
204 Ga0453684_0061657
205 Ga0453684_0066886
206 Ga0453684_0105420
207 Ga0453684_0133977
208 Ga0453684_0157949
209 Ga0453684_0314707
210 Ga0453684_0395221
211 Ga0451576_0006725
212 Ga0451576_0065096
213 Ga0451576_0085345
214 Ga0451576_0260729
215 2524000865
216 2740993607

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13458

Peripla_BP_6

Periplasmic binding protein

73

417

0.91

PF13433

Peripla_BP_5

Periplasmic binding protein domain

74

414

0.87

PF01094

ANF_receptor

Receptor family ligand binding region

94

416

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ip9-assembly1.cif.gz_A structure of atu2422-gaba receptor in complex with gaba 0.8545 28 348
1z18-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.8514 28 348
4n0q-assembly1.cif.gz_A crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic) 0.8443 30 347
3ipc-assembly1.cif.gz_A structure of atu2422-gaba f77a mutant receptor in complex with leucine 0.8382 28 348
4eyk-assembly1.cif.gz_A crystal structure of solute binding protein of abc transporter from rhodopseudomonas palustris bisb5 in complex with 3,4-dihydroxy benzoic acid 0.8371 29 346
ID Description Score Start End Superfamily
3ipcA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9411 28 330 3.40.50.2300
af_Q4DRD2_474_528_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9296 96 149 3.40.50.2300
af_Q69L07_59_152_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9288 72 152 3.40.50.2300
4n0qD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9282 30 330 3.40.50.2300
3ipcA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.923 28 330 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A528G7S6-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9876 30 137 GO:0006865
AF-A0A528G7S6-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9527 30 137 GO:0006865
AF-A0A354FGA4-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9467 28 143 GO:0006865
AF-A0A7S1X7E3-F1-model_v4 Receptor ligand binding region domain-containing protein 0.9443 77 173 GO:0004930
GO:0016020
AF-A0A536FUL6-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9428 27 151 GO:0006865

Map