F047593

General Info

Members Datasets Scaffolds Average Seq Length
108 87 101 703

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100080167|Ga0070706_1000801672
Length 724
Sequence MSRAAKVVASIAVDELTERQARAEHKRLAEEISYHDKLYHEQDAPEISDAQYDRLRQRLKAIEERLPELIDSSSPTQLVAPTPTTAFSKVRHARPMLSLDNAFTDEELQSFFDRVRRGLERETDLKPDAEIAFACEPKIDGLSISLRYQDGEFVVGATRGDGTTGEDVTANLRTVKDIPHKLKGKAPRGFPRALDVRGEIYMERKAFQQMNERQEAAGEKTFANPRNAAAGSLRQLDPEITASRPLRFFAYAWGEAEPRSWKTHSEYLKLLREWGFKVNPLSQLCRTPAAVRDFYREMSVARPSLPYDIDGVVYKLDRIDWQERLGFVSRAPRWAIAHKFPAEQARTRLNGILISVGRTGALTPVADLEPVNVGGVVVARATLHNADEIERLGVRAGDMVIVQRAGDVIPQILGYVPEERPKKTTKFQFPTHCPCPLKTKVQSEEGGVVRRCTGGLECPFQQVERLRHFVSRNCFDIEGLGGTHIENFWRDGLLKVPGDIFRLPRRVDDIRKREGWGDLSVRNLVAAIEARRTISLDRFINAIGIPLIGEATAKILAQEYGDADGWLAEMLQAAKERKKKPDPVKKEKAAVEVGPSYGQLCNIEQIGVTTADAMCAFFSEGHTVDIIRDLLKELSVQPVERRVVAADAKLRDKIVVFTGELSTMTRDAAKARAEELGAKVTDSVSKKTSLVVVGENAGSKARKAAELGVQTMTEQEWLKLAGVG

Samples

Sample ID Description Type Environment
1 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
2 2739367756 Asticcacaulis sp. CF398 Isolate Unclassified
3 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
4 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
5 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
21 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
22 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
27 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
28 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
29 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
30 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
38 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
39 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
40 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
41 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
42 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
43 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
44 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
45 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
46 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
47 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
48 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
49 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
50 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
51 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
52 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
53 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
54 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
55 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
56 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
57 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
58 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
59 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
60 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
61 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
64 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
65 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
66 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
67 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
68 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
69 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
70 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
77 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
78 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
79 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
80 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
81 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
82 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
83 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
84 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
85 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
86 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
87 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.52
Metatranscriptomes 0
Isolates 6.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.41
Nodule 0
Rhizoplane 0
Rhizosphere 72.22
Stem 0
Stem Tuber 0
Unclassified 20.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10014438 3300005327 Bacteria 6338
2 Ga0070680_100006996 3300005336 Bacteria 8596
3 Ga0070714_100015553 3300005435 Bacteria 6121
4 Ga0070713_100018275 3300005436 Bacteria 5328
5 Ga0070681_10024295 3300005458 Bacteria 6101
6 Ga0070681_10032988 3300005458 Bacteria 5198
7 Ga0070706_100080167 3300005467 Bacteria 3022
8 Ga0070698_100017603 3300005471 Bacteria 7530
9 Ga0070679_100005310 3300005530 Bacteria 11922
10 Ga0070679_100060866 3300005530 Bacteria 3763
11 Ga0070697_100000413 3300005536 Bacteria 32976
12 Ga0070697_100058766 3300005536 Bacteria 3129
13 Ga0070695_100003697 3300005545 Bacteria 8916
14 Ga0070665_100025856 3300005548 Bacteria 5911
15 Ga0070665_100154027 3300005548 Bacteria 2300
16 Ga0068855_100021373 3300005563 Bacteria 7760
17 Ga0081455_10001015 3300005937 Bacteria 35513
18 Ga0081455_10005240 3300005937 Bacteria 14252
19 Ga0081539_10002068 3300005985 Bacteria 30068
20 Ga0075369_10015797 3300006186 Bacteria 3036
21 Ga0075366_10003179 3300006195 Bacteria 8603
22 Ga0075436_100000443 3300006914 Bacteria 26527
23 Ga0099794_10020257 3300007265 Bacteria 3008
24 Ga0105240_10034238 3300009093 Bacteria 6555
25 Ga0157370_10017898 3300013104 Bacteria 7137
26 Ga0157369_10056535 3300013105 Bacteria 4234
27 Ga0183365_10001 3300015684 Bacteria 2090444
28 Ga0213876_10007280 3300021384 Bacteria 6025
29 Ga0213875_10000081 3300021388 Bacteria 114181
30 Ga0213875_10003108 3300021388 Bacteria 9573
31 Ga0213875_10006560 3300021388 Bacteria 6090
32 Ga0207707_10031944 3300025912 Bacteria 4609
33 Ga0207693_10000772 3300025915 Bacteria 28753
34 Ga0207700_10008315 3300025928 Bacteria 6418
35 Ga0207644_10052665 3300025931 Bacteria 2926
36 Ga0207674_10016716 3300026116 Bacteria 8017
37 Ga0268266_10016930 3300028379 Bacteria 6228
38 Ga0268264_10045717 3300028381 Bacteria 3635
39 Ga0307515_10000004 3300028794 Bacteria 846506
40 Ga0265340_10027905 3300031247 Bacteria 2842
41 Ga0265331_10000093 3300031250 Bacteria 123060
42 Ga0265327_10001247 3300031251 Bacteria 33961
43 Ga0373943_0000864 3300035170 Bacteria 13364
44 Ga0373955_0010731 3300035172 Bacteria 4339
45 Ga0373924_0013547 3300035410 Bacteria 3065
46 Ga0373935_0006586 3300035692 Bacteria 6940
47 Ga0373933_0003650 3300035724 Bacteria 8526
48 Ga0373937_0000643 3300036401 Bacteria 30619
49 Ga0373937_0011683 3300036401 Bacteria 7701
50 Ga0373937_0141700 3300036401 Bacteria 2249
51 Ga0373925_0003731 3300037068 Bacteria 11697
52 Ga0395899_0006326 3300037312 Bacteria 9165
53 Ga0395899_0015299 3300037312 Bacteria 5846
54 Ga0395900_0140969 3300037418 Bacteria 2468
55 Ga0395898_0028477 3300037466 Bacteria 5596
56 Ga0395898_0033266 3300037466 Bacteria 5146
57 Ga0395905_0000234 3300037471 Bacteria 83778
58 Ga0436364_0560002 3300037853 Bacteria 93566
59 Ga0436364_0585229 3300037853 Bacteria 25011
60 Ga0436364_0889300 3300037853 Bacteria 29470
61 Ga0436364_1089975 3300037853 Bacteria 6070
62 Ga0436364_1494985 3300037853 Bacteria 27295
63 Ga0395901_0002282 3300038443 Bacteria 19553
64 Ga0395901_0013111 3300038443 Bacteria 8413
65 Ga0395901_0035549 3300038443 Bacteria 5148
66 Ga0395901_0086396 3300038443 Bacteria 3279
67 Ga0436365_1272752 3300039437 Bacteria 8793
68 Ga0436360_0611602 3300039438 Bacteria 8815
69 Ga0436361_1079759 3300039447 Bacteria 3247
70 Ga0466969_0000771 3300044656 Bacteria 17443
71 Ga0466966_0001130 3300044684 Bacteria 17143
72 Ga0466963_0011779 3300044694 Bacteria 5333
73 Ga0466971_0004494 3300044719 Bacteria 6027
74 Ga0466970_0004824 3300044765 Bacteria 6657
75 Ga0466957_0051531 3300044842 Bacteria 2505
76 Ga0466959_0004557 3300045049 Bacteria 9297
77 Ga0495580_0009176 3300046472 Bacteria 7798
78 Ga0495643_0000066 3300046522 Bacteria 178049
79 Ga0495643_0000145 3300046522 Bacteria 114577
80 Ga0495658_0000795 3300046683 Bacteria 17002
81 Ga0495649_0000034 3300046694 Bacteria 136483
82 Ga0496116_0000063 3300048919 Bacteria 269969
83 Ga0496125_0000268 3300048928 Bacteria 106762
84 Ga0496126_0071332 3300048929 Bacteria 3092
85 Ga0501033_0008701 3300049570 Bacteria 7851
86 Ga0501034_0004189 3300049571 Bacteria 16099
87 Ga0501034_0005304 3300049571 Bacteria 14133
88 Ga0501038_0039184 3300049574 Bacteria 4146
89 Ga0501047_0100617 3300049581 Bacteria 2770
90 Ga0501070_0051784 3300049586 Bacteria 3407
91 Ga0501044_0041068 3300049823 Bacteria 4816
92 nmdc:mga08x19_10337_c1 3300050514 Bacteria 5602
93 nmdc:mga08x19_66_c1 3300050514 Bacteria 105609
94 nmdc:mga0sz30_4261_c1 3300050516 Bacteria 5160
95 Ga0495601_0012953 3300053077 Bacteria 5009
96 Ga0500635_0002394 3300053080 Bacteria 4644
97 Ga0495619_0023755 3300053085 Bacteria 3930
98 Ga0500641_0002410 3300053096 Bacteria 6635
99 Ga0500608_000253 3300053122 Bacteria 20968
100 Ga0500568_0004039 3300053139 Bacteria 7952
101 Ga0500616_0005285 3300053153 Bacteria 8822

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028794 Ga0307515_10000004 Ga0307515_10000004487 625
2 3300005530 Ga0070679_100060866 Ga0070679_1000608662 637
3 3300013104 Ga0157370_10017898 Ga0157370_100178985 637
4 3300025931 Ga0207644_10052665 Ga0207644_100526652 647
5 3300015684 Ga0183365_10001 Ga0183365_100011156 649
6 3300048928 Ga0496125_0000268 Ga0496125_0000268_71434_73578 651
7 iso_pu_bacteria 2821123053 2821125000 654
8 3300044656 Ga0466969_0000771 Ga0466969_0000771_6771_8849 656
9 3300044684 Ga0466966_0001130 Ga0466966_0001130_7764_9842 656
10 3300044719 Ga0466971_0004494 Ga0466971_0004494_2125_4203 656
11 3300044765 Ga0466970_0004824 Ga0466970_0004824_3846_5924 656
12 3300044842 Ga0466957_0051531 Ga0466957_0051531_350_2428 656
13 3300045049 Ga0466959_0004557 Ga0466959_0004557_3590_5668 656
14 iso_pu_bacteria 2739367756 2739790432 656
15 3300037471 Ga0395905_0000234 Ga0395905_0000234_39465_41546 657
16 3300046472 Ga0495580_0009176 Ga0495580_0009176_4517_6601 657
17 3300046683 Ga0495658_0000795 Ga0495658_0000795_5678_7762 657
18 3300053080 Ga0500635_0002394 Ga0500635_0002394_1639_3726 657
19 3300053122 Ga0500608_000253 Ga0500608_000253_11391_13475 657
20 iso_pu_bacteria 641228493 641337154 657
21 3300035170 Ga0373943_0000864 Ga0373943_0000864_4001_6088 658
22 3300035692 Ga0373935_0006586 Ga0373935_0006586_570_2657 658
23 3300037068 Ga0373925_0003731 Ga0373925_0003731_7741_9828 658
24 3300025928 Ga0207700_10008315 Ga0207700_100083153 660
25 iso_pu_bacteria 2818991439 2819558559 661
26 3300021388 Ga0213875_10006560 Ga0213875_100065602 662
27 3300037853 Ga0436364_1494985 Ga0436364_1494985_22037_24190 662
28 3300049570 Ga0501033_0008701 Ga0501033_0008701_5324_7390 662
29 3300049574 Ga0501038_0039184 Ga0501038_0039184_1294_3360 662
30 3300049581 Ga0501047_0100617 Ga0501047_0100617_303_2369 662
31 3300031250 Ga0265331_10000093 Ga0265331_1000009322 663
32 3300031251 Ga0265327_10001247 Ga0265327_1000124721 663
33 3300050514 nmdc:mga08x19_10337_c1 nmdc:mga08x19_10337_c1_2061_4181 663
34 3300046522 Ga0495643_0000066 Ga0495643_0000066_93770_95917 665
35 3300046522 Ga0495643_0000145 Ga0495643_0000145_95791_97935 665
36 3300046694 Ga0495649_0000034 Ga0495649_0000034_9231_11375 665
37 3300048919 Ga0496116_0000063 Ga0496116_0000063_226693_228837 665
38 3300021388 Ga0213875_10000081 Ga0213875_10000081105 666
39 3300025912 Ga0207707_10031944 Ga0207707_100319443 666
40 3300037853 Ga0436364_0560002 Ga0436364_0560002_9905_12043 666
41 3300005536 Ga0070697_100000413 Ga0070697_1000004136 667
42 3300005545 Ga0070695_100003697 Ga0070695_1000036973 667
43 3300006914 Ga0075436_100000443 Ga0075436_1000004437 667
44 3300050514 nmdc:mga08x19_66_c1 nmdc:mga08x19_66_c1_50629_52725 667
45 iso_pu_bacteria 643348555 643392672 667
46 3300037853 Ga0436364_0889300 Ga0436364_0889300_24010_26106 668
47 3300049586 Ga0501070_0051784 Ga0501070_0051784_1079_3199 668
48 3300005458 Ga0070681_10032988 Ga0070681_100329883 669
49 iso_pu_bacteria 2909399089 2909401342 671
50 3300036401 Ga0373937_0011683 Ga0373937_0011683_2297_4417 673
51 3300036401 Ga0373937_0141700 Ga0373937_0141700_25_2145 673
52 3300037853 Ga0436364_1089975 Ga0436364_1089975_3913_6054 673
53 3300053077 Ga0495601_0012953 Ga0495601_0012953_1483_3603 673
54 3300053085 Ga0495619_0023755 Ga0495619_0023755_364_2484 673
55 3300053139 Ga0500568_0004039 Ga0500568_0004039_5671_7824 673
56 3300021388 Ga0213875_10003108 Ga0213875_100031082 674
57 3300035172 Ga0373955_0010731 Ga0373955_0010731_122_2260 674
58 3300035410 Ga0373924_0013547 Ga0373924_0013547_345_2483 674
59 3300035724 Ga0373933_0003650 Ga0373933_0003650_4339_6468 674
60 3300036401 Ga0373937_0000643 Ga0373937_0000643_2642_4771 674
61 3300037853 Ga0436364_0585229 Ga0436364_0585229_12942_15071 674
62 3300005435 Ga0070714_100015553 Ga0070714_1000155534 675
63 3300005436 Ga0070713_100018275 Ga0070713_1000182752 675
64 3300005536 Ga0070697_100058766 Ga0070697_1000587662 675
65 3300025915 Ga0207693_10000772 Ga0207693_100007728 675
66 3300053096 Ga0500641_0002410 Ga0500641_0002410_1117_3273 675
67 3300048929 Ga0496126_0071332 Ga0496126_0071332_217_2373 676
68 3300006186 Ga0075369_10015797 Ga0075369_100157972 679
69 3300050516 nmdc:mga0sz30_4261_c1 nmdc:mga0sz30_4261_c1_623_2779 679
70 iso_pu_bacteria 2524023250 2524610854 683
71 3300049823 Ga0501044_0041068 Ga0501044_0041068_2482_4617 686
72 3300028381 Ga0268264_10045717 Ga0268264_100457171 690
73 3300021384 Ga0213876_10007280 Ga0213876_100072803 691
74 3300039437 Ga0436365_1272752 Ga0436365_1272752_2937_5093 691
75 3300026116 Ga0207674_10016716 Ga0207674_100167163 692
76 3300005548 Ga0070665_100025856 Ga0070665_1000258564 693
77 3300005548 Ga0070665_100154027 Ga0070665_1001540271 693
78 3300005937 Ga0081455_10001015 Ga0081455_100010155 693
79 3300005985 Ga0081539_10002068 Ga0081539_1000206824 693
80 3300007265 Ga0099794_10020257 Ga0099794_100202572 693
81 3300013105 Ga0157369_10056535 Ga0157369_100565352 693
82 3300028379 Ga0268266_10016930 Ga0268266_100169304 693
83 3300037312 Ga0395899_0015299 Ga0395899_0015299_3575_5734 693
84 3300037418 Ga0395900_0140969 Ga0395900_0140969_127_2286 693
85 3300037466 Ga0395898_0028477 Ga0395898_0028477_3262_5421 693
86 3300038443 Ga0395901_0035549 Ga0395901_0035549_2386_4590 693
87 3300038443 Ga0395901_0086396 Ga0395901_0086396_994_3153 693
88 3300039438 Ga0436360_0611602 Ga0436360_0611602_6244_8400 693
89 3300039447 Ga0436361_1079759 Ga0436361_1079759_605_2761 693
90 3300044694 Ga0466963_0011779 Ga0466963_0011779_2320_4479 693
91 3300005327 Ga0070658_10014438 Ga0070658_100144382 694
92 3300005336 Ga0070680_100006996 Ga0070680_1000069964 694
93 3300005458 Ga0070681_10024295 Ga0070681_100242952 694
94 3300005467 Ga0070706_100080167 Ga0070706_1000801672 694
95 3300005471 Ga0070698_100017603 Ga0070698_1000176032 694
96 3300005530 Ga0070679_100005310 Ga0070679_1000053108 694
97 3300005563 Ga0068855_100021373 Ga0068855_1000213735 694
98 3300005937 Ga0081455_10005240 Ga0081455_100052406 694
99 3300006195 Ga0075366_10003179 Ga0075366_100031793 694
100 3300009093 Ga0105240_10034238 Ga0105240_100342385 694
101 3300031247 Ga0265340_10027905 Ga0265340_100279052 694
102 3300037312 Ga0395899_0006326 Ga0395899_0006326_5217_7379 694
103 3300037466 Ga0395898_0033266 Ga0395898_0033266_1647_3809 694
104 3300038443 Ga0395901_0002282 Ga0395901_0002282_17241_19403 694
105 3300038443 Ga0395901_0013111 Ga0395901_0013111_4850_7012 694
106 3300049571 Ga0501034_0004189 Ga0501034_0004189_13783_15945 694
107 3300049571 Ga0501034_0005304 Ga0501034_0005304_3826_5991 694
108 3300053153 Ga0500616_0005285 Ga0500616_0005285_84_2243 694

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03120

DNA_ligase_OB

NAD-dependent DNA ligase OB-fold domain

346

424

0.97

PF00533

BRCT

BRCA1 C Terminus (BRCT) domain

647

721

0.95

PF01653

DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

84

343

0.95

PF22745

Nlig-Ia

DNA ligase-like, N-terminal NAD+-binding domain

20

88

0.9

PF12738

PTCB-BRCT

twin BRCT domain

654

717

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7u1a-assembly1.cif.gz_A rfc:pcna bound to dsdna with a ssdna gap of six nucleotides 0.9248 622 692
7u19-assembly1.cif.gz_A rfc:pcna bound to nicked dna 0.9141 622 692
8dr3-assembly1.cif.gz_A closed state of rfc:pcna bound to a 3' ss/dsdna junction (dna2) with ntd 0.8738 622 693
8dr5-assembly1.cif.gz_A open state of rfc:pcna bound to a 3' ss/dsdna junction (dna2) with ntd 0.8736 622 693
6l30-assembly1.cif.gz_A crystal structure of the epithelial cell transforming 2 (ect2) 0.8592 620 691
ID Description Score Start End Superfamily
4lh7A01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9773 15 78 1.10.287.610
af_P15042_588_670_3.40.50.10190 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;BRCT domain 0.9742 617 694 3.40.50.10190
1dgtA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9707 16 79 1.10.287.610
1taeD01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9658 15 70 1.10.287.610
3uq8A01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9639 21 78 1.10.287.610
ID Description Score Start End GO Terms
AF-A0A7V6BDZ0-F1-model_v4 NAD-dependent DNA ligase LigA (EC 6.5.1.2) 0.9844 622 693 GO:0003911
AF-A0A2J0MVZ1-F1-model_v4 NAD-dependent DNA ligase LigA 0.9842 622 694 GO:0016874
AF-A0A6B3E7W9-F1-model_v4 NAD-dependent DNA ligase LigA 0.9838 622 694 GO:0016874
AF-A0A661BKM2-F1-model_v4 DNA ligase (EC 6.5.1.2) 0.9832 622 693 GO:0003911
AF-A0A7X6T623-F1-model_v4 BRCT domain-containing protein 0.9807 622 692

Feature Viewer

pLDDT pTM Quality
82.4 0.55 Medium
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Predicted Structure (AlphaFold2)

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