F044729

General Info

Members Datasets Scaffolds Average Seq Length
107 81 65 328

Family's Representative Sequence

Representative Sequence 3300044683|Ga0466965_0142641|Ga0466965_0142641_58_1206
Length 382
Sequence VAKGWDDELAALDALTRPQTSARRAPRPPGSERRVSMADVAARAGVSGQTVSRVVNDSPRVDPDTRARVEAAMAALGYRPHRAARALRTGRTHTIGLVVSTLASVGNSRMLQAVADAAAARGYALTVVTLGLEGGVSAAFERLGDQGVDGVIVLNEATALALDVPVPRGLSLVVVDAPRLAPGRAGAGQQDAGRSAVQSDHAAGARAAVEHLLGLGHRTVHHIAGPVDSFAAAERERGWRAALAGAERDVPAVVRGDWTAASGHRAGLELGRSSGVTAVFAANDQMALGAMRALADAGRDIPRDVSVVGFDDVADAADYRPPLTTVRQEFDRLGELAVARVVAGIEDGAVGSDLVPTGLVVRESTAAPREHRSAVGAPTERR

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221566 Microbacterium sp. Root166 Isolate Unclassified
4 2643221575 Microbacterium sp. Root61 Isolate Unclassified
5 2643221597 Microbacterium sp. Root180 Isolate Unclassified
6 2643221630 Microbacterium sp. Root322 Isolate Unclassified
7 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
8 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
9 2773857759 Microbacterium sp. 1294 Isolate Unclassified
10 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
11 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
12 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
13 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
14 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
15 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
16 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
17 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
18 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
19 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
20 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
21 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
22 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
23 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
24 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
25 2919069694 Microbacterium sp. 1154 Isolate Unclassified
26 2919395869 Microbacterium resistens 2980 Isolate Unclassified
27 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
28 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
29 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
30 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
31 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
32 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
33 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
34 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
35 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
36 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
37 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
38 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
39 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
40 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
46 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
49 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
50 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
51 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
52 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
53 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
54 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
55 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
56 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
57 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
58 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
59 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
60 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
61 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
62 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
63 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
64 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
65 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
66 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
67 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
68 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
69 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
70 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
71 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
72 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
73 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
77 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
78 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
79 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
80 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
81 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 60.75
Metatranscriptomes 0
Isolates 39.25

Biome Distribution

Category Percentage (%)
Aerial Root 1.87
Bulb 0
Endosphere 5.61
Nodule 0
Rhizoplane 11.21
Rhizosphere 27.1
Stem 0
Stem Tuber 0
Unclassified 54.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1002680 3300002738 Bacteria 4363
2 Ga0075365_10013983 3300006038 Bacteria 4818
3 Ga0075364_10038363 3300006051 Bacteria 3103
4 Ga0075364_10093622 3300006051 Bacteria 1995
5 Ga0075367_10052892 3300006178 Bacteria 2405
6 Ga0171462_1002 3300013250 Bacteria 1052134
7 Ga0157372_10035606 3300013307 Bacteria 5481
8 Ga0209646_1000014 3300025246 Bacteria 550484
9 Ga0207709_10040578 3300025935 Bacteria 2788
10 Ga0268266_10071803 3300028379 Bacteria 3001
11 Ga0307413_10131925 3300031824 Bacteria 1712
12 Ga0307406_10013022 3300031901 Bacteria 4755
13 Ga0307406_10150428 3300031901 Bacteria 1660
14 Ga0307406_10278067 3300031901 Bacteria 1275
15 Ga0395901_0069443 3300038443 Bacteria 3669
16 Ga0466965_0142641 3300044683 Bacteria 1248
17 Ga0495627_000470 3300046453 Bacteria 34690
18 Ga0495645_0081797 3300046543 Bacteria 2317
19 Ga0496100_0004619 3300048903 Bacteria 7321
20 Ga0496101_0024498 3300048904 Bacteria 4177
21 Ga0496104_0032421 3300048907 Bacteria 4862
22 Ga0496105_0126217 3300048908 Bacteria 2109
23 Ga0496105_0421586 3300048908 Bacteria 1056
24 Ga0496108_0585677 3300048911 Bacteria 972
25 Ga0496109_0051819 3300048912 Bacteria 3739
26 Ga0496109_0160008 3300048912 Bacteria 2109
27 Ga0496110_0090116 3300048913 Bacteria 2742
28 Ga0496113_0231258 3300048916 Bacteria 1474
29 Ga0496114_0026269 3300048917 Bacteria 4765
30 Ga0496114_0234955 3300048917 Bacteria 1611
31 Ga0496116_0015425 3300048919 Bacteria 6039
32 Ga0496117_0000091 3300048920 Bacteria 203826
33 Ga0496117_0000540 3300048920 Bacteria 62134
34 Ga0496117_0052930 3300048920 Bacteria 2856
35 Ga0496118_0006912 3300048921 Bacteria 12275
36 Ga0496119_0002470 3300048922 Bacteria 20282
37 Ga0496119_0002958 3300048922 Bacteria 18052
38 Ga0496119_0003177 3300048922 Bacteria 17224
39 Ga0496119_0196811 3300048922 Bacteria 1046
40 Ga0496120_0002278 3300048923 Bacteria 19927
41 Ga0496120_0020076 3300048923 Bacteria 4257
42 Ga0496120_0033799 3300048923 Bacteria 3069
43 Ga0496120_0158100 3300048923 Bacteria 1133
44 Ga0496122_0000208 3300048925 Bacteria 131175
45 Ga0496122_0005696 3300048925 Bacteria 14698
46 Ga0496122_0048829 3300048925 Bacteria 3249
47 Ga0496123_0000003 3300048926 Bacteria 866556
48 Ga0496123_0015188 3300048926 Bacteria 6334
49 Ga0496124_0022803 3300048927 Bacteria 5732
50 Ga0496124_0028354 3300048927 Bacteria 5009
51 Ga0496124_0035326 3300048927 Bacteria 4374
52 Ga0496124_0090100 3300048927 Bacteria 2503
53 Ga0496125_0002214 3300048928 Bacteria 25925
54 Ga0496125_0007831 3300048928 Bacteria 11292
55 Ga0496125_0018036 3300048928 Bacteria 6708
56 Ga0496125_0078377 3300048928 Bacteria 2540
57 Ga0496126_0022335 3300048929 Bacteria 6159
58 Ga0496126_0037532 3300048929 Bacteria 4520
59 Ga0496126_0077905 3300048929 Bacteria 2938
60 Ga0496126_0183408 3300048929 Bacteria 1776
61 Ga0501034_0000622 3300049571 Bacteria 55475
62 Ga0501038_0008676 3300049574 Bacteria 9331
63 Ga0501070_0002452 3300049586 Bacteria 16253
64 nmdc:mga00v17_64687_c1 3300050491 Bacteria 2254
65 nmdc:mga0yw44_146692_c1 3300050492 Bacteria 1537

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048911 Ga0496108_0585677 Ga0496108_0585677_55_930 271
2 3300038443 Ga0395901_0069443 Ga0395901_0069443_883_1884 303
3 3300048922 Ga0496119_0196811 Ga0496119_0196811_29_964 303
4 3300049574 Ga0501038_0008676 Ga0501038_0008676_150_1124 303
5 3300048922 Ga0496119_0002470 Ga0496119_0002470_13986_14933 305
6 3300048923 Ga0496120_0002278 Ga0496120_0002278_5325_6272 305
7 iso_pu_bacteria 2773857759 2774382856 309
8 iso_pu_bacteria 2977251589 2977253044 309
9 iso_pu_bacteria 2857720070 2857722542 312
10 iso_pu_bacteria 2757320536 2758225799 314
11 iso_pu_bacteria 8016254467 8016256221 314
12 3300028379 Ga0268266_10071803 Ga0268266_100718031 315
13 iso_pu_bacteria 2808606368 2808883940 315
14 3300013307 Ga0157372_10035606 Ga0157372_100356065 316
15 3300048903 Ga0496100_0004619 Ga0496100_0004619_4731_5705 316
16 3300048904 Ga0496101_0024498 Ga0496101_0024498_87_1061 316
17 3300048907 Ga0496104_0032421 Ga0496104_0032421_206_1180 316
18 3300048908 Ga0496105_0421586 Ga0496105_0421586_23_997 316
19 3300048912 Ga0496109_0160008 Ga0496109_0160008_716_1690 316
20 3300048917 Ga0496114_0026269 Ga0496114_0026269_740_1714 316
21 3300050492 nmdc:mga0yw44_146692_c1 nmdc:mga0yw44_146692_c1_333_1301 316
22 iso_pu_bacteria 2773857758 2774379843 316
23 iso_pu_bacteria 2904509784 2904513146 316
24 iso_pu_bacteria 2919069694 2919069767 316
25 iso_pu_bacteria 2928090899 2928092955 316
26 iso_pu_bacteria 2974294766 2974296028 316
27 iso_pu_bacteria 2974324384 2974327708 316
28 iso_pu_bacteria 2977228692 2977229331 316
29 iso_pu_bacteria 2977236895 2977238623 316
30 iso_pu_bacteria 2977264416 2977264519 316
31 iso_pu_bacteria 2984542743 2984543595 316
32 iso_pu_bacteria 2984580707 2984583487 316
33 3300048913 Ga0496110_0090116 Ga0496110_0090116_250_1227 317
34 3300048922 Ga0496119_0002958 Ga0496119_0002958_214_1212 317
35 3300048923 Ga0496120_0158100 Ga0496120_0158100_105_1082 317
36 iso_pu_bacteria 2908678064 2908679125 317
37 3300006038 Ga0075365_10013983 Ga0075365_100139835 318
38 3300006051 Ga0075364_10038363 Ga0075364_100383633 318
39 3300048920 Ga0496117_0000091 Ga0496117_0000091_113018_113977 318
40 3300048923 Ga0496120_0033799 Ga0496120_0033799_29_988 318
41 3300048925 Ga0496122_0048829 Ga0496122_0048829_1454_2413 318
42 3300048926 Ga0496123_0015188 Ga0496123_0015188_5296_6255 318
43 3300048927 Ga0496124_0028354 Ga0496124_0028354_3940_4899 318
44 3300048928 Ga0496125_0002214 Ga0496125_0002214_8108_9067 318
45 3300048928 Ga0496125_0078377 Ga0496125_0078377_82_1038 318
46 3300048929 Ga0496126_0022335 Ga0496126_0022335_33_992 318
47 iso_pu_bacteria 2643221597 2643996974 318
48 iso_pu_bacteria 2811994872 2812324784 318
49 3300006051 Ga0075364_10093622 Ga0075364_100936222 319
50 3300048919 Ga0496116_0015425 Ga0496116_0015425_415_1380 319
51 3300048920 Ga0496117_0052930 Ga0496117_0052930_1005_1970 319
52 3300048921 Ga0496118_0006912 Ga0496118_0006912_895_1860 319
53 3300048922 Ga0496119_0003177 Ga0496119_0003177_12286_13251 319
54 3300048923 Ga0496120_0020076 Ga0496120_0020076_73_1038 319
55 3300048925 Ga0496122_0000208 Ga0496122_0000208_68171_69136 319
56 3300048926 Ga0496123_0000003 Ga0496123_0000003_65805_66770 319
57 3300048927 Ga0496124_0035326 Ga0496124_0035326_476_1441 319
58 3300048928 Ga0496125_0018036 Ga0496125_0018036_1703_2668 319
59 3300048929 Ga0496126_0183408 Ga0496126_0183408_413_1378 319
60 3300050491 nmdc:mga00v17_64687_c1 nmdc:mga00v17_64687_c1_337_1311 319
61 iso_pu_bacteria 2585428157 2588107205 319
62 iso_pu_bacteria 2643221566 2643847034 319
63 iso_pu_bacteria 2808606447 2809228586 319
64 iso_pu_bacteria 2833709550 2833712530 319
65 3300048927 Ga0496124_0090100 Ga0496124_0090100_1432_2418 320
66 iso_pu_bacteria 2773857763 2774397920 320
67 iso_pu_bacteria 2852632344 2852634038 320
68 iso_pu_bacteria 2870628048 2870629257 320
69 iso_pu_bacteria 8045830549 8045833690 320
70 3300048908 Ga0496105_0126217 Ga0496105_0126217_875_1993 321
71 3300048912 Ga0496109_0051819 Ga0496109_0051819_1826_2944 321
72 3300048916 Ga0496113_0231258 Ga0496113_0231258_47_1165 321
73 iso_pu_bacteria 2946080515 2946083794 321
74 3300013250 Ga0171462_1002 Ga0171462_1002596 323
75 3300049586 Ga0501070_0002452 Ga0501070_0002452_12712_13722 323
76 3300048928 Ga0496125_0007831 Ga0496125_0007831_2830_3855 324
77 3300048925 Ga0496122_0005696 Ga0496122_0005696_9123_10157 325
78 3300025935 Ga0207709_10040578 Ga0207709_100405782 327
79 3300048929 Ga0496126_0077905 Ga0496126_0077905_971_2005 327
80 iso_pu_bacteria 2919395869 2919397627 327
81 iso_pu_bacteria 2808606306 2808629113 328
82 3300046543 Ga0495645_0081797 Ga0495645_0081797_347_1354 329
83 3300048917 Ga0496114_0234955 Ga0496114_0234955_200_1207 329
84 iso_pu_bacteria 2643221575 2643886866 329
85 iso_pu_bacteria 2852663356 2852663822 329
86 3300006178 Ga0075367_10052892 Ga0075367_100528922 330
87 3300031901 Ga0307406_10013022 Ga0307406_100130223 330
88 3300031901 Ga0307406_10278067 Ga0307406_102780671 330
89 3300044683 Ga0466965_0142641 Ga0466965_0142641_58_1206 330
90 3300048929 Ga0496126_0037532 Ga0496126_0037532_1819_2847 330
91 3300049571 Ga0501034_0000622 Ga0501034_0000622_42671_43696 330
92 iso_pu_bacteria 2821268502 2821271344 330
93 iso_pu_bacteria 2946041624 2946045452 330
94 iso_pu_bacteria 8004212874 8004214847 330
95 iso_pu_bacteria 8004182704 8004184242 331
96 3300046453 Ga0495627_000470 Ga0495627_000470_26277_27314 332
97 3300048920 Ga0496117_0000540 Ga0496117_0000540_41389_42426 332
98 3300048927 Ga0496124_0022803 Ga0496124_0022803_807_1832 332
99 iso_pu_bacteria 2643221542 2643732797 332
100 iso_pu_bacteria 2643221630 2644171587 332
101 iso_pu_bacteria 2857723135 2857726358 332
102 3300031901 Ga0307406_10150428 Ga0307406_101504282 333
103 3300002738 JGI25154J39366_1002680 JGI25154J39366_10026804 335
104 3300025246 Ga0209646_1000014 Ga0209646_1000014337 335
105 3300031824 Ga0307413_10131925 Ga0307413_101319252 335
106 iso_pu_bacteria 2852646457 2852647779 335
107 iso_pu_bacteria 2945968032 2945969051 335

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

36

81

0.97

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

92

365

0.89

PF13407

Peripla_BP_4

Periplasmic binding protein domain

95

320

0.89

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

209

365

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
1osl-assembly1.cif.gz_B solution structure of a dimeric lactose dna-binding domain complexed to a nonspecific dna sequence 0.9027 12 60
2kei-assembly1.cif.gz_A refined solution structure of a dimer of lac repressor dna-binding domain complexed to its natural operator o1 0.899 14 65
1lbi-assembly1.cif.gz_D lac repressor 0.897 72 335
1tlf-assembly1.cif.gz_A unprecedented quaternary structure of e. coli lac repressor core tetramer: implications for dna looping 0.893 72 335
3k4h-assembly1.cif.gz_A crystal structure of putative transcriptional regulator laci from bacillus cereus subsp. cytotoxis nvh 391-98 0.8906 72 335
ID Description Score Start End Superfamily
2jcgA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9773 14 60 1.10.260.40
3kkeB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9521 167 287 3.40.50.2300
3cs3A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9393 167 287 3.40.50.2300
3e3mB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9379 166 287 3.40.50.2300
3kjxB01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9306 14 62 1.10.260.40
ID Description Score Start End GO Terms
AF-X1TXG5-F1-model_v4 Transcriptional regulator LacI/GalR-like sensor domain-containing protein 0.9552 169 310 GO:0000976
GO:0003700
AF-A0A4V0ZJI8-F1-model_v4 Lactose operon repressor 0.9519 162 335 GO:0000976
GO:0003700
AF-A0A660QII2-F1-model_v4 LacI family transcriptional regulator 0.9462 162 334 GO:0000976
GO:0003700
AF-A0A154MPU9-F1-model_v4 Transcriptional regulator LacI/GalR-like sensor domain-containing protein 0.9441 162 335 GO:0000976
GO:0003700
AF-A0A660X137-F1-model_v4 deleted 0.9404 165 331

Feature Viewer

pLDDT pTM Quality
87.85 0.77 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map