F043946

General Info

Members Datasets Scaffolds Average Seq Length
107 70 214 528

Family's Representative Sequence

Representative Sequence 3300028800|Ga0265338_10005152|Ga0265338_1000515214
Length 585
Sequence MKIRTPGAEPGIEFMRATGSTLQMSVGKLLSVADIVLTTLNAKYIHAAFGLRYLLANLGPLRSAACLVEFDINQRPLDIVEVLLARNPKIIGFGVYIWNVEPTIEVIAAIKRLRPDIKIILGGPEVSYETEAQPIVQLADHVITGEADLKFAEVCRTLLYQSVGDEVTSLTSDSELNDETPHVVTYPKIIPAELPEFSQIALPYELYTDDDIAHRIIYVEASRGCPFTCEFCLSSLDIPVRQVPLPVLLREMQRLLDRGVKQFKFVDRTFNLNVATSQTILEFFLERHQPGHFFHFEMIPDRLPESLREIIARFPPGALQFEVGVQTFNEDVSQVISRRQNYEKLADNFRFLRNETGVHIHADLIVGLPGETLESFGAGFDRLVALRPQEIQAGILKRLRGTPIVRHDAEWRMVYNPHPPYEILSNRLIDFATMQRLRRLARYWDMVGNSGNFIETAPLIWSENSSSVGRASSRSEINSEDRAAESIPTQRAFAGFLRFSDWLHARTNRTDGIALVRLMELLFEFLTGELKLDSKPVAEAMWHDYKRGGRHDKPGFLKDFLTDEKVVTLRRTKTVLPNRQARHLV

Samples

Sample ID Description Type Environment
1 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
23 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
24 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
32 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
33 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
34 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
35 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
36 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
37 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
38 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
39 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
40 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
41 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
42 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
43 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
44 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
45 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
46 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
47 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
48 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
49 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
50 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
51 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
52 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
53 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
54 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
55 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
56 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
57 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
58 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
59 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
60 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
61 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
62 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
63 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
64 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
65 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
66 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
68 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
69 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
70 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.93
Nodule 0
Rhizoplane 0.93
Rhizosphere 97.2
Stem 0
Stem Tuber 0
Unclassified 12.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265338_10005152 3300028800 Bacteria 17199
2 rootH2_10047228 3300003320 Bacteria 9861
3 Ga0070690_100004037 3300005330 Bacteria 8123
4 Ga0070689_100012283 3300005340 Bacteria 6164
5 Ga0070691_10012044 3300005341 Unclassified 3961
6 Ga0070688_100035385 3300005365 Bacteria 3033
7 Ga0070711_100002469 3300005439 Bacteria 10554
8 Ga0070681_10039728 3300005458 Bacteria 4716
9 Ga0070685_10023824 3300005466 Unclassified 3355
10 Ga0070707_100272399 3300005468 Bacteria 1646
11 Ga0070686_100009869 3300005544 Bacteria 5367
12 Ga0070665_100000930 3300005548 Bacteria 37459
13 Ga0070704_100075897 3300005549 Bacteria 2457
14 Ga0068855_100030501 3300005563 Bacteria 6449
15 Ga0068855_100080794 3300005563 Bacteria 3770
16 Ga0068857_100032300 3300005577 Unclassified 4629
17 Ga0068856_100001650 3300005614 Bacteria 23391
18 Ga0068856_100122941 3300005614 Bacteria 2598
19 Ga0068852_100195320 3300005616 Bacteria 1912
20 Ga0068859_100059233 3300005617 Bacteria 3858
21 Ga0075431_100162110 3300006847 Bacteria 2299
22 Ga0097620_100059232 3300006931 Bacteria 3858
23 Ga0105240_10005099 3300009093 Bacteria 19683
24 Ga0105240_10023762 3300009093 Bacteria 8097
25 Ga0105240_10098233 3300009093 Bacteria 3566
26 Ga0105238_10004742 3300009551 Bacteria 13451
27 Ga0105238_10068504 3300009551 Unclassified 3550
28 Ga0157375_10000072 3300013308 Bacteria 106823
29 Ga0207705_10042953 3300025909 Bacteria 3246
30 Ga0207663_10022347 3300025916 Bacteria 3615
31 Ga0207694_10069008 3300025924 Bacteria 2761
32 Ga0207670_10039721 3300025936 Unclassified 3084
33 Ga0207667_10036136 3300025949 Bacteria 5297
34 Ga0207702_10002275 3300026078 Bacteria 18413
35 Ga0268264_10016744 3300028381 Bacteria 5999
36 Ga0265337_1000305 3300028556 Bacteria 26124
37 Ga0265337_1017625 3300028556 Bacteria 2286
38 Ga0265326_10006705 3300028558 Bacteria 3561
39 Ga0265334_10013856 3300028573 Unclassified 3370
40 Ga0265334_10030900 3300028573 Bacteria 2142
41 Ga0265323_10000016 3300028653 Bacteria 96953
42 Ga0265336_10001987 3300028666 Bacteria 8734
43 Ga0265336_10023430 3300028666 Bacteria 1957
44 Ga0265338_10000009 3300028800 Bacteria 448611
45 Ga0265338_10000240 3300028800 Bacteria 101444
46 Ga0265338_10000316 3300028800 Bacteria 87532
47 Ga0265338_10001201 3300028800 Bacteria 42815
48 Ga0265338_10001496 3300028800 Bacteria 37847
49 Ga0265338_10001504 3300028800 Bacteria 37705
50 Ga0265338_10003857 3300028800 Bacteria 20792
51 Ga0265338_10004764 3300028800 Bacteria 18133
52 Ga0265338_10005743 3300028800 Bacteria 16052
53 Ga0265338_10010312 3300028800 Bacteria 10980
54 Ga0265338_10038041 3300028800 Bacteria 4567
55 Ga0265338_10076388 3300028800 Bacteria 2837
56 Ga0265338_10090768 3300028800 Bacteria 2527
57 Ga0265324_10000693 3300029957 Bacteria 22492
58 Ga0265324_10008606 3300029957 Unclassified 4044
59 Ga0265332_10026899 3300031238 Unclassified 2521
60 Ga0265320_10005109 3300031240 Bacteria 8477
61 Ga0265320_10010579 3300031240 Bacteria 5484
62 Ga0265329_10002584 3300031242 Bacteria 8173
63 Ga0265339_10002808 3300031249 Bacteria 12367
64 Ga0265327_10002069 3300031251 Bacteria 22420
65 Ga0265327_10005693 3300031251 Bacteria 10287
66 Ga0265327_10018813 3300031251 Bacteria 4268
67 Ga0265316_10004788 3300031344 Bacteria 13352
68 Ga0265316_10019814 3300031344 Bacteria 5744
69 Ga0265316_10037259 3300031344 Bacteria 3927
70 Ga0265313_10003881 3300031595 Bacteria 11780
71 Ga0265314_10000435 3300031711 Bacteria 55753
72 Ga0265314_10016077 3300031711 Bacteria 5924
73 Ga0265314_10027553 3300031711 Unclassified 4254
74 Ga0265314_10069501 3300031711 Bacteria 2363
75 Ga0265342_10032219 3300031712 Bacteria 3234
76 Ga0307409_100038894 3300031995 Bacteria 3524
77 Ga0307409_100044638 3300031995 Bacteria 3340
78 Ga0307416_100098342 3300032002 Bacteria 2538
79 Ga0373947_0003660 3300035725 Bacteria 9068
80 Ga0373925_0006066 3300037068 Bacteria 8939
81 Ga0451577_0006273 3300042876 Bacteria 11907
82 Ga0451577_0048261 3300042876 Bacteria 3804
83 Ga0453684_0006551 3300044712 Bacteria 22049
84 Ga0453684_0119365 3300044712 Bacteria 3187
85 Ga0451576_0201851 3300045051 Bacteria 2077
86 Ga0495592_0000027 3300046454 Bacteria 132938
87 Ga0495628_0000349 3300046516 Bacteria 42121
88 Ga0495630_0020023 3300046517 Bacteria 4927
89 Ga0495630_0059363 3300046517 Bacteria 2870
90 Ga0495666_0020068 3300046526 Bacteria 3315
91 Ga0495640_0040888 3300046533 Unclassified 3243
92 Ga0495645_0044046 3300046543 Unclassified 3255
93 Ga0495634_0097618 3300046642 Unclassified 1901
94 Ga0495599_0029124 3300046678 Unclassified 3461
95 Ga0495599_0046654 3300046678 Bacteria 2717
96 Ga0495613_0004520 3300046689 Bacteria 10431
97 Ga0495613_0005511 3300046689 Bacteria 9507
98 Ga0495674_0021873 3300047319 Bacteria 5909
99 Ga0495680_0040428 3300047322 Bacteria 3716
100 Ga0495684_0008049 3300047471 Bacteria 8152
101 Ga0495684_0090451 3300047471 Bacteria 2319
102 Ga0496115_0008180 3300048918 Bacteria 7726
103 Ga0501047_0047976 3300049581 Bacteria 4126
104 Ga0501083_0001421 3300049744 Bacteria 16334
105 nmdc:mga06r32_106773_c1 3300050510 Bacteria 2751
106 nmdc:mga08y16_249694_c1 3300050511 Bacteria 1833
107 Ga0500636_0022351 3300053177 Bacteria 3744
108 Ga0265338_10005152
109 rootH2_10047228
110 Ga0070690_100004037
111 Ga0070689_100012283
112 Ga0070691_10012044
113 Ga0070688_100035385
114 Ga0070711_100002469
115 Ga0070681_10039728
116 Ga0070685_10023824
117 Ga0070707_100272399
118 Ga0070686_100009869
119 Ga0070665_100000930
120 Ga0070704_100075897
121 Ga0068855_100030501
122 Ga0068855_100080794
123 Ga0068857_100032300
124 Ga0068856_100001650
125 Ga0068856_100122941
126 Ga0068852_100195320
127 Ga0068859_100059233
128 Ga0075431_100162110
129 Ga0097620_100059232
130 Ga0105240_10005099
131 Ga0105240_10023762
132 Ga0105240_10098233
133 Ga0105238_10004742
134 Ga0105238_10068504
135 Ga0157375_10000072
136 Ga0207705_10042953
137 Ga0207663_10022347
138 Ga0207694_10069008
139 Ga0207670_10039721
140 Ga0207667_10036136
141 Ga0207702_10002275
142 Ga0268264_10016744
143 Ga0265337_1000305
144 Ga0265337_1017625
145 Ga0265326_10006705
146 Ga0265334_10013856
147 Ga0265334_10030900
148 Ga0265323_10000016
149 Ga0265336_10001987
150 Ga0265336_10023430
151 Ga0265338_10000009
152 Ga0265338_10000240
153 Ga0265338_10000316
154 Ga0265338_10001201
155 Ga0265338_10001496
156 Ga0265338_10001504
157 Ga0265338_10003857
158 Ga0265338_10004764
159 Ga0265338_10005743
160 Ga0265338_10010312
161 Ga0265338_10038041
162 Ga0265338_10076388
163 Ga0265338_10090768
164 Ga0265324_10000693
165 Ga0265324_10008606
166 Ga0265332_10026899
167 Ga0265320_10005109
168 Ga0265320_10010579
169 Ga0265329_10002584
170 Ga0265339_10002808
171 Ga0265327_10002069
172 Ga0265327_10005693
173 Ga0265327_10018813
174 Ga0265316_10004788
175 Ga0265316_10019814
176 Ga0265316_10037259
177 Ga0265313_10003881
178 Ga0265314_10000435
179 Ga0265314_10016077
180 Ga0265314_10027553
181 Ga0265314_10069501
182 Ga0265342_10032219
183 Ga0307409_100038894
184 Ga0307409_100044638
185 Ga0307416_100098342
186 Ga0373947_0003660
187 Ga0373925_0006066
188 Ga0451577_0006273
189 Ga0451577_0048261
190 Ga0453684_0006551
191 Ga0453684_0119365
192 Ga0451576_0201851
193 Ga0495592_0000027
194 Ga0495628_0000349
195 Ga0495630_0020023
196 Ga0495630_0059363
197 Ga0495666_0020068
198 Ga0495640_0040888
199 Ga0495645_0044046
200 Ga0495634_0097618
201 Ga0495599_0029124
202 Ga0495599_0046654
203 Ga0495613_0004520
204 Ga0495613_0005511
205 Ga0495674_0021873
206 Ga0495680_0040428
207 Ga0495684_0008049
208 Ga0495684_0090451
209 Ga0496115_0008180
210 Ga0501047_0047976
211 Ga0501083_0001421
212 nmdc:mga06r32_106773_c1
213 nmdc:mga08y16_249694_c1
214 Ga0500636_0022351

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13311

DUF4080

Protein of unknown function (DUF4080)

409

468

0.91

PF04055

Radical_SAM

Radical SAM superfamily

219

383

0.89

PF02310

B12-binding

B12 binding domain

35

155

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
6b4c-assembly10.cif.gz_J structure of viperin from trichoderma virens 0.8039 196 346
6b4c-assembly1.cif.gz_A structure of viperin from trichoderma virens 0.7885 196 346
6b4c-assembly4.cif.gz_D structure of viperin from trichoderma virens 0.7722 196 346
6wte-assembly2.cif.gz_B structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with cobalamin and [4fe-4s] cluster bound 0.7661 1 357
6wtf-assembly2.cif.gz_B structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7639 4 370
ID Description Score Start End Superfamily
af_Q58275_166_383_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8379 170 362 3.80.30.20
af_Q58277_145_376_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8243 169 355 3.80.30.20
af_Q7K4W1_211_437_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8146 169 356 3.80.30.20
af_Q96SZ6_246_518_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8117 169 359 3.80.30.20
af_Q4CUJ9_220_394_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.8113 246 363 3.30.750.200
ID Description Score Start End GO Terms
AF-A0A1F9VJS2-F1-model_v4 Uncharacterized protein 0.9851 1 471 GO:0003824
GO:0005829
GO:0031419
GO:0046872
GO:0051536
AF-A0A7C3MDP9-F1-model_v4 DUF4080 domain-containing protein 0.9799 1 487 GO:0003824
GO:0005829
GO:0031419
GO:0046872
GO:0051536
AF-A0A6P1M995-F1-model_v4 DUF4080 domain-containing protein 0.978 3 476 GO:0003824
GO:0005829
GO:0031419
GO:0046872
GO:0051536
AF-A0A1F9W8P4-F1-model_v4 B12-binding domain-containing radical SAM protein 0.9778 89 462 GO:0003824
GO:0005829
GO:0051536
AF-A0A6S6RTR1-F1-model_v4 Mg-protoporphyrin IX monomethyl ester oxidative cyclase 0.9775 1 459 GO:0003824
GO:0005829
GO:0031419
GO:0046872
GO:0051536

Map