F039307

General Info

Members Datasets Scaffolds Average Seq Length
106 43 204 113

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0142913|Ga0451577_0142913_1352_1714
Length 120
Sequence LPFGEIDMKFIIAIIQPDKVDAVLDNLEESEIHLVTVSNALGRGRQKGIASVYRSVQEAGNLLRKVKLEIAVNEEYVERTVKAITDGARTGEVGDGKIFVLNLEECVRVRTGETGKAAIG

Samples

Sample ID Description Type Environment
1 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
4 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
5 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
6 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
7 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
8 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
9 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
10 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
11 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
12 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
13 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
18 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
19 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
20 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
21 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
22 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
23 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
24 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
25 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
26 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
27 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
28 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
29 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
30 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
31 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
32 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
33 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
34 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
35 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
36 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
37 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
38 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
39 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
40 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
41 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
42 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
43 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.17
Metatranscriptomes 2.83
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.72
Rhizosphere 94.34
Stem 0
Stem Tuber 0
Unclassified 8.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451577_0142913 3300042876 Bacteria 2151
2 Ga0070658_11746891 3300005327 Unclassified 538
3 Ga0068867_100950292 3300005459 Bacteria 776
4 Ga0070672_100459028 3300005543 Bacteria 1098
5 Ga0070665_100013369 3300005548 Bacteria 8261
6 Ga0068857_100780859 3300005577 Bacteria 911
7 Ga0105240_10009331 3300009093 Bacteria 13906
8 Ga0105237_11286763 3300009545 Unclassified 738
9 Ga0105238_11503525 3300009551 Bacteria 702
10 Ga0105239_10018944 3300010375 Bacteria 7607
11 Ga0157370_10342476 3300013104 Bacteria 1378
12 Ga0157370_11171311 3300013104 Bacteria 694
13 Ga0157372_11454631 3300013307 Bacteria 790
14 Ga0207695_10008067 3300025913 Bacteria 13248
15 Ga0207671_11012245 3300025914 Unclassified 654
16 Ga0207661_10878891 3300025944 Bacteria 825
17 Ga0268266_10021355 3300028379 Bacteria 5515
18 Ga0265319_1017889 3300028563 Bacteria 2686
19 Ga0265323_10080311 3300028653 Bacteria 1102
20 Ga0265338_10887415 3300028800 Bacteria 608
21 Ga0265332_10189124 3300031238 Bacteria 857
22 Ga0265316_10001957 3300031344 Bacteria 21647
23 Ga0265316_10063491 3300031344 Bacteria 2864
24 Ga0265316_10154781 3300031344 Bacteria 1716
25 Ga0265316_10183453 3300031344 Bacteria 1557
26 Ga0265316_10342054 3300031344 Bacteria 1084
27 Ga0265316_10928941 3300031344 Unclassified 607
28 Ga0316579_10185033 3300031691 Bacteria 1007
29 Ga0265342_10057106 3300031712 Bacteria 2311
30 Ga0265342_10267832 3300031712 Bacteria 907
31 Ga0316576_10008316 3300031727 Bacteria 6608
32 Ga0316576_10019858 3300031727 Bacteria 4610
33 Ga0316576_10527737 3300031727 Bacteria 867
34 Ga0316577_10158959 3300031733 Bacteria 1275
35 Ga0316580_10171401 3300032139 Bacteria 667
36 Ga0316593_10064496 3300032168 Bacteria 1258
37 Ga0316593_10163848 3300032168 Bacteria 813
38 Ga0316596_1250225 3300033541 Bacteria 500
39 Ga0316574_0019156 3300035398 Bacteria 4035
40 Ga0316574_0389176 3300035398 Bacteria 879
41 Ga0316574_0606688 3300035398 Unclassified 676
42 Ga0373924_0039964 3300035410 Bacteria 1918
43 Ga0316582_0131883 3300036647 Bacteria 1679
44 Ga0316582_0292261 3300036647 Bacteria 1119
45 Ga0316582_0585854 3300036647 Bacteria 768
46 Ga0316582_1167440 3300036647 Bacteria 524
47 Ga0316584_0478264 3300036712 Unclassified 878
48 Ga0316584_0594591 3300036712 Unclassified 768
49 Ga0395898_0989924 3300037466 Bacteria 777
50 Ga0400483_080981 3300039062 Bacteria 1587
51 Ga0451577_0000254 3300042876 Bacteria 105712
52 Ga0451577_0000527 3300042876 Bacteria 63726
53 Ga0451577_0004077 3300042876 Bacteria 15709
54 Ga0451577_0006329 3300042876 Bacteria 11839
55 Ga0451577_0019392 3300042876 Bacteria 6254
56 Ga0451577_0094265 3300042876 Bacteria 2673
57 Ga0451577_0146046 3300042876 Bacteria 2127
58 Ga0451577_0266755 3300042876 Bacteria 1550
59 Ga0451577_0816738 3300042876 Bacteria 842
60 Ga0451577_0972197 3300042876 Bacteria 763
61 Ga0451577_1605617 3300042876 Bacteria 573
62 Ga0451577_1610251 3300042876 Bacteria 573
63 Ga0453683_0105841 3300044673 Bacteria 1768
64 Ga0453683_0183911 3300044673 Bacteria 1326
65 Ga0453684_0000010 3300044712 Bacteria 1133422
66 Ga0453684_0000027 3300044712 Bacteria 778857
67 Ga0453684_0000100 3300044712 Bacteria 368331
68 Ga0453684_0000107 3300044712 Bacteria 362864
69 Ga0453684_0000177 3300044712 Bacteria 282969
70 Ga0453684_0011378 3300044712 Bacteria 14941
71 Ga0453684_0011494 3300044712 Bacteria 14824
72 Ga0453684_0025616 3300044712 Bacteria 8559
73 Ga0453684_0046347 3300044712 Bacteria 5782
74 Ga0453684_0052378 3300044712 Bacteria 5338
75 Ga0453684_0080660 3300044712 Bacteria 4062
76 Ga0453684_0131703 3300044712 Bacteria 2999
77 Ga0453684_0238859 3300044712 Bacteria 2093
78 Ga0453684_0518529 3300044712 Bacteria 1317
79 Ga0453684_0612137 3300044712 Bacteria 1193
80 Ga0453684_0940551 3300044712 Bacteria 923
81 Ga0453684_1073344 3300044712 Unclassified 852
82 Ga0453684_1227862 3300044712 Bacteria 785
83 Ga0453684_1344210 3300044712 Bacteria 743
84 Ga0453684_1511944 3300044712 Bacteria 692
85 Ga0453684_1760275 3300044712 Bacteria 631
86 Ga0453684_1910181 3300044712 Bacteria 600
87 Ga0453684_2029533 3300044712 Bacteria 578
88 Ga0451576_0002631 3300045051 Bacteria 26277
89 Ga0451576_0007235 3300045051 Bacteria 13363
90 Ga0451576_0012297 3300045051 Bacteria 9628
91 Ga0451576_0014730 3300045051 Bacteria 8695
92 Ga0451576_0180830 3300045051 Bacteria 2202
93 Ga0451576_0285548 3300045051 Bacteria 1725
94 Ga0451576_0420300 3300045051 Bacteria 1402
95 Ga0451576_0999518 3300045051 Bacteria 877
96 Ga0451576_1171560 3300045051 Unclassified 803
97 Ga0496104_0166100 3300048907 Bacteria 2117
98 Ga0496105_0899315 3300048908 Bacteria 667
99 Ga0496108_0442410 3300048911 Bacteria 1135
100 Ga0496109_0336035 3300048912 Bacteria 1426
101 Ga0496114_0441675 3300048917 Bacteria 1152
102 Ga0501080_0168813 3300049742 Bacteria 2018
103 Ga0451577_0142913
104 Ga0070658_11746891
105 Ga0068867_100950292
106 Ga0070672_100459028
107 Ga0070665_100013369
108 Ga0068857_100780859
109 Ga0105240_10009331
110 Ga0105237_11286763
111 Ga0105238_11503525
112 Ga0105239_10018944
113 Ga0157370_10342476
114 Ga0157370_11171311
115 Ga0157372_11454631
116 Ga0207695_10008067
117 Ga0207671_11012245
118 Ga0207661_10878891
119 Ga0268266_10021355
120 Ga0265319_1017889
121 Ga0265323_10080311
122 Ga0265338_10887415
123 Ga0265332_10189124
124 Ga0265316_10001957
125 Ga0265316_10063491
126 Ga0265316_10154781
127 Ga0265316_10183453
128 Ga0265316_10342054
129 Ga0265316_10928941
130 Ga0316579_10185033
131 Ga0265342_10057106
132 Ga0265342_10267832
133 Ga0316576_10008316
134 Ga0316576_10019858
135 Ga0316576_10527737
136 Ga0316577_10158959
137 Ga0316580_10171401
138 Ga0316593_10064496
139 Ga0316593_10163848
140 Ga0316596_1250225
141 Ga0316574_0019156
142 Ga0316574_0389176
143 Ga0316574_0606688
144 Ga0373924_0039964
145 Ga0316582_0131883
146 Ga0316582_0292261
147 Ga0316582_0585854
148 Ga0316582_1167440
149 Ga0316584_0478264
150 Ga0316584_0594591
151 Ga0395898_0989924
152 Ga0400483_080981
153 Ga0451577_0000254
154 Ga0451577_0000527
155 Ga0451577_0004077
156 Ga0451577_0006329
157 Ga0451577_0019392
158 Ga0451577_0094265
159 Ga0451577_0146046
160 Ga0451577_0266755
161 Ga0451577_0816738
162 Ga0451577_0972197
163 Ga0451577_1605617
164 Ga0451577_1610251
165 Ga0453683_0105841
166 Ga0453683_0183911
167 Ga0453684_0000010
168 Ga0453684_0000027
169 Ga0453684_0000100
170 Ga0453684_0000107
171 Ga0453684_0000177
172 Ga0453684_0011378
173 Ga0453684_0011494
174 Ga0453684_0025616
175 Ga0453684_0046347
176 Ga0453684_0052378
177 Ga0453684_0080660
178 Ga0453684_0131703
179 Ga0453684_0238859
180 Ga0453684_0518529
181 Ga0453684_0612137
182 Ga0453684_0940551
183 Ga0453684_1073344
184 Ga0453684_1227862
185 Ga0453684_1344210
186 Ga0453684_1511944
187 Ga0453684_1760275
188 Ga0453684_1910181
189 Ga0453684_2029533
190 Ga0451576_0002631
191 Ga0451576_0007235
192 Ga0451576_0012297
193 Ga0451576_0014730
194 Ga0451576_0180830
195 Ga0451576_0285548
196 Ga0451576_0420300
197 Ga0451576_0999518
198 Ga0451576_1171560
199 Ga0496104_0166100
200 Ga0496105_0899315
201 Ga0496108_0442410
202 Ga0496109_0336035
203 Ga0496114_0441675
204 Ga0501080_0168813

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00543

P-II

Nitrogen regulatory protein P-II

8

113

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1v9o-assembly1.cif.gz_C crystal structure of tt1020 from thermus thermophilus hb8 0.9782 1 108
7p4y-assembly4.cif.gz_K glnk2 from methanothermococcus thermolithotrophicus in the apo state at a resolution of 2.3 a 0.978 2 112
7p4y-assembly4.cif.gz_J glnk2 from methanothermococcus thermolithotrophicus in the apo state at a resolution of 2.3 a 0.9778 2 112
3t9z-assembly2.cif.gz_E a. fulgidus glnk3, ligand-free 0.9726 1 108
4cny-assembly1.cif.gz_A structure of pii signaling protein glnz from azospirillum brasilense 0.9709 1 108
ID Description Score Start End Superfamily
4oznB00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9465 2 111 3.30.70.120
2o66C00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.946 2 113 3.30.70.120
3l7pE00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9388 2 102 3.30.70.120
4c3kE00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9216 1 111 3.30.70.120
4c3kE00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9125 1 111 3.30.70.120
ID Description Score Start End GO Terms
AF-A0A357BKJ3-F1-model_v4 P-II family nitrogen regulator 0.9471 1 112 GO:0005524
GO:0005829
GO:0006808
GO:0030234
AF-A0A357BKJ3-F1-model_v4 P-II family nitrogen regulator 0.938 1 112 GO:0005524
GO:0005829
GO:0006808
GO:0030234
AF-A0A1F9V954-F1-model_v4 Transcriptional regulator 0.937 1 113 GO:0005524
GO:0005829
GO:0006808
GO:0030234
AF-Q2FMD4-F1-model_v4 Nitrogen regulatory protein P-II 0.9354 1 110 GO:0005524
GO:0005829
GO:0006808
GO:0030234
AF-A0A1G1KQM7-F1-model_v4 Transcriptional regulator 0.9312 1 111 GO:0005524
GO:0005829
GO:0006808
GO:0030234

Map