F038486

General Info

Members Datasets Scaffolds Average Seq Length
106 85 212 355

Family's Representative Sequence

Representative Sequence 3300028577|Ga0265318_10001234|Ga0265318_100012345
Length 396
Sequence LRDSRASPTFRAPAVTAIPSIPPLARVPEEWVQSLSAMGGRTFHARQLFRWMHARGVLELDRMSDLPKDVRAGLASLEIERTAQIVDERRASDDTRKLLVRMRDGATVETVLIPSVSGPKSALPSPLEPLEDADARSGAEEPIRVTQCVSSQVGCAMGCVFCASGLAGLKRQLGPDEIIAQILLGRTRLDPNERLRNVVFMGMGEPLHNYESTVRALRLLTHPDGVALSARRITVSTSGLVPEIARLGADFAGNIGLAVSLHAADDEMRSRLMPINKKYPLGPLMNALRAYPLPRRRRITIEYTLVDGRNDAPGAARALAALLRGIPVKINLIPMNPIASSALGPPDLTRVLEFQKILCDAGYSCFIRRRRGDDVSAACGQLALLGAKPKVRVNRG

Samples

Sample ID Description Type Environment
1 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
13 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
41 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
42 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
43 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
44 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
45 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
46 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
47 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
50 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
56 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
57 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
58 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
59 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
60 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
61 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
62 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
63 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
64 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
65 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
66 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
67 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
68 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
69 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
70 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
71 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
72 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
73 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
74 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
75 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
76 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
77 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
78 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
79 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
80 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
83 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
84 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
85 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.11
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265318_10001234 3300028577 Bacteria 15555
2 Ga0070658_10179755 3300005327 Bacteria 1780
3 Ga0068868_100001730 3300005338 Bacteria 14951
4 Ga0070714_100000152 3300005435 Bacteria 55654
5 Ga0070705_100035609 3300005440 Bacteria 2792
6 Ga0070708_100079042 3300005445 Bacteria 2975
7 Ga0070678_100033508 3300005456 Bacteria 3567
8 Ga0068867_100026544 3300005459 Bacteria 4159
9 Ga0070706_100074047 3300005467 Bacteria 3153
10 Ga0070699_100002043 3300005518 Bacteria 18236
11 Ga0070684_100142740 3300005535 Bacteria 2166
12 Ga0070695_100002051 3300005545 Bacteria 11521
13 Ga0070696_100038545 3300005546 Bacteria 3299
14 Ga0068859_100140409 3300005617 Bacteria 2489
15 Ga0068861_100001444 3300005719 Bacteria 15028
16 Ga0068863_100368076 3300005841 Bacteria 1402
17 Ga0068858_100099006 3300005842 Bacteria 2718
18 Ga0081455_10111066 3300005937 Bacteria 2178
19 Ga0075428_100017725 3300006844 Bacteria 7869
20 Ga0075434_100088801 3300006871 Bacteria 3093
21 Ga0075429_100027711 3300006880 Bacteria 4917
22 Ga0097620_100140415 3300006931 Bacteria 2489
23 Ga0099794_10045585 3300007265 Bacteria 2098
24 Ga0111539_10063256 3300009094 Bacteria 4379
25 Ga0105245_10019760 3300009098 Bacteria 5904
26 Ga0105247_10001593 3300009101 Bacteria 16072
27 Ga0114129_10083685 3300009147 Bacteria 4431
28 Ga0099796_10017816 3300010159 Bacteria 2122
29 Ga0163162_10592217 3300013306 Bacteria 1235
30 Ga0157380_10082131 3300014326 Bacteria 2637
31 Ga0157380_10546809 3300014326 Bacteria 1135
32 Ga0157379_10338856 3300014968 Bacteria 1375
33 Ga0207646_10008773 3300025922 Bacteria 10090
34 Ga0207687_10023634 3300025927 Bacteria 4100
35 Ga0207664_10000078 3300025929 Bacteria 97308
36 Ga0207670_10018577 3300025936 Bacteria 4231
37 Ga0207677_10001863 3300026023 Bacteria 11148
38 Ga0207648_10016343 3300026089 Bacteria 6784
39 Ga0207675_100001988 3300026118 Bacteria 20380
40 Ga0268264_10069141 3300028381 Bacteria 2986
41 Ga0265319_1000060 3300028563 Bacteria 86612
42 Ga0265318_10000059 3300028577 Bacteria 109714
43 Ga0265330_10000125 3300031235 Bacteria 62453
44 Ga0265332_10000193 3300031238 Bacteria 49646
45 Ga0265328_10039692 3300031239 Bacteria 1736
46 Ga0265320_10000279 3300031240 Bacteria 41279
47 Ga0265320_10022985 3300031240 Bacteria 3327
48 Ga0265325_10000168 3300031241 Bacteria 46393
49 Ga0265329_10000049 3300031242 Bacteria 51170
50 Ga0265340_10000566 3300031247 Bacteria 20551
51 Ga0265340_10012740 3300031247 Bacteria 4439
52 Ga0265339_10000257 3300031249 Bacteria 42838
53 Ga0265339_10000987 3300031249 Bacteria 21804
54 Ga0265331_10000396 3300031250 Bacteria 44713
55 Ga0265331_10008004 3300031250 Bacteria 6047
56 Ga0265316_10000288 3300031344 Bacteria 56725
57 Ga0265316_10000787 3300031344 Bacteria 34910
58 Ga0265313_10000042 3300031595 Bacteria 118213
59 Ga0265313_10000904 3300031595 Bacteria 29805
60 Ga0265314_10000353 3300031711 Bacteria 63956
61 Ga0265314_10000633 3300031711 Bacteria 43095
62 Ga0265314_10045195 3300031711 Bacteria 3116
63 Ga0265342_10000029 3300031712 Bacteria 153373
64 Ga0265342_10009307 3300031712 Bacteria 6937
65 Ga0316576_10146128 3300031727 Bacteria 1781
66 Ga0316578_10069016 3300031728 Bacteria 2091
67 Ga0307507_10075956 3300033179 Bacteria 3001
68 Ga0373934_0021806 3300035086 Bacteria 2470
69 Ga0373923_0019948 3300035111 Bacteria 2600
70 Ga0373954_0000511 3300035118 Bacteria 14523
71 Ga0373956_0011229 3300035119 Bacteria 3688
72 Ga0373937_0048613 3300036401 Bacteria 3883
73 Ga0373937_0174416 3300036401 Bacteria 2018
74 Ga0373937_0294637 3300036401 Bacteria 1533
75 Ga0316582_0028806 3300036647 Bacteria 3368
76 Ga0316582_0036062 3300036647 Bacteria 3058
77 Ga0316584_0118419 3300036712 Bacteria 1980
78 Ga0400489_54243 3300039093 Bacteria 7995
79 Ga0451577_0038509 3300042876 Bacteria 4301
80 Ga0451577_0134972 3300042876 Bacteria 2216
81 Ga0453683_0092992 3300044673 Bacteria 1891
82 Ga0453684_0004124 3300044712 Bacteria 31488
83 Ga0453684_0009555 3300044712 Bacteria 16929
84 Ga0453684_0114460 3300044712 Bacteria 3270
85 Ga0453684_0132428 3300044712 Bacteria 2990
86 Ga0453684_0151874 3300044712 Bacteria 2751
87 Ga0451576_0118485 3300045051 Bacteria 2756
88 Ga0451576_0403804 3300045051 Bacteria 1433
89 Ga0495592_0275100 3300046454 Bacteria 1103
90 Ga0495629_0001985 3300046459 Bacteria 15932
91 Ga0495639_0004073 3300046475 Bacteria 6268
92 Ga0495639_0028280 3300046475 Bacteria 2483
93 Ga0495628_0088035 3300046516 Bacteria 2407
94 Ga0495635_0083546 3300046663 Bacteria 2185
95 Ga0495647_0020438 3300046681 Bacteria 2376
96 Ga0495658_0002830 3300046683 Bacteria 8717
97 Ga0495613_0032530 3300046689 Bacteria 3875
98 Ga0495581_0016042 3300047315 Bacteria 4354
99 Ga0495676_0055038 3300047321 Bacteria 3158
100 Ga0495680_0028060 3300047322 Bacteria 4618
101 Ga0495614_0036072 3300048089 Bacteria 2123
102 Ga0501047_0149161 3300049581 Bacteria 2215
103 nmdc:mga09592_21826_c1 3300050508 Bacteria 5280
104 nmdc:mga0n895_343770_c1 3300050512 Bacteria 1511
105 nmdc:mga0rr50_40851_c1 3300050513 Bacteria 3375
106 nmdc:mga08x19_85216_c1 3300050514 Bacteria 2079
107 Ga0265318_10001234
108 Ga0070658_10179755
109 Ga0068868_100001730
110 Ga0070714_100000152
111 Ga0070705_100035609
112 Ga0070708_100079042
113 Ga0070678_100033508
114 Ga0068867_100026544
115 Ga0070706_100074047
116 Ga0070699_100002043
117 Ga0070684_100142740
118 Ga0070695_100002051
119 Ga0070696_100038545
120 Ga0068859_100140409
121 Ga0068861_100001444
122 Ga0068863_100368076
123 Ga0068858_100099006
124 Ga0081455_10111066
125 Ga0075428_100017725
126 Ga0075434_100088801
127 Ga0075429_100027711
128 Ga0097620_100140415
129 Ga0099794_10045585
130 Ga0111539_10063256
131 Ga0105245_10019760
132 Ga0105247_10001593
133 Ga0114129_10083685
134 Ga0099796_10017816
135 Ga0163162_10592217
136 Ga0157380_10082131
137 Ga0157380_10546809
138 Ga0157379_10338856
139 Ga0207646_10008773
140 Ga0207687_10023634
141 Ga0207664_10000078
142 Ga0207670_10018577
143 Ga0207677_10001863
144 Ga0207648_10016343
145 Ga0207675_100001988
146 Ga0268264_10069141
147 Ga0265319_1000060
148 Ga0265318_10000059
149 Ga0265330_10000125
150 Ga0265332_10000193
151 Ga0265328_10039692
152 Ga0265320_10000279
153 Ga0265320_10022985
154 Ga0265325_10000168
155 Ga0265329_10000049
156 Ga0265340_10000566
157 Ga0265340_10012740
158 Ga0265339_10000257
159 Ga0265339_10000987
160 Ga0265331_10000396
161 Ga0265331_10008004
162 Ga0265316_10000288
163 Ga0265316_10000787
164 Ga0265313_10000042
165 Ga0265313_10000904
166 Ga0265314_10000353
167 Ga0265314_10000633
168 Ga0265314_10045195
169 Ga0265342_10000029
170 Ga0265342_10009307
171 Ga0316576_10146128
172 Ga0316578_10069016
173 Ga0307507_10075956
174 Ga0373934_0021806
175 Ga0373923_0019948
176 Ga0373954_0000511
177 Ga0373956_0011229
178 Ga0373937_0048613
179 Ga0373937_0174416
180 Ga0373937_0294637
181 Ga0316582_0028806
182 Ga0316582_0036062
183 Ga0316584_0118419
184 Ga0400489_54243
185 Ga0451577_0038509
186 Ga0451577_0134972
187 Ga0453683_0092992
188 Ga0453684_0004124
189 Ga0453684_0009555
190 Ga0453684_0114460
191 Ga0453684_0132428
192 Ga0453684_0151874
193 Ga0451576_0118485
194 Ga0451576_0403804
195 Ga0495592_0275100
196 Ga0495629_0001985
197 Ga0495639_0004073
198 Ga0495639_0028280
199 Ga0495628_0088035
200 Ga0495635_0083546
201 Ga0495647_0020438
202 Ga0495658_0002830
203 Ga0495613_0032530
204 Ga0495581_0016042
205 Ga0495676_0055038
206 Ga0495680_0028060
207 Ga0495614_0036072
208 Ga0501047_0149161
209 nmdc:mga09592_21826_c1
210 nmdc:mga0n895_343770_c1
211 nmdc:mga0rr50_40851_c1
212 nmdc:mga08x19_85216_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21016

RlmN_N

Ribosomal RNA large subunit methyltransferase N-terminal domain

29

79

0.91

PF04055

Radical_SAM

Radical SAM superfamily

149

318

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
6hq9-assembly2.cif.gz_B crystal structure of the tudor domain of human ercc6-l2 0.857 73 99
6fto-assembly1.cif.gz_B crystal structure of the chp2 chromoshadow domain in complex with n-terminal domain of chromatin remodeler mit1 0.7648 72 99
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.7586 14 356
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.7485 14 356
5hr7-assembly2.cif.gz_B x-ray crystal structure of c118a rlmn from escherichia coli with cross-linked in vitro transcribed trna 0.7442 14 343
ID Description Score Start End Superfamily
3rfaA01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9029 14 66 1.10.150.530
3rfaB01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.8977 13 66 1.10.150.530
4pl1B01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.8938 13 66 1.10.150.530
3rf9A01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.8889 14 66 1.10.150.530
af_P36979_1_78_1.10.150.530 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.8875 14 66 1.10.150.530
ID Description Score Start End GO Terms
AF-A0A7X8VQ75-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9411 15 164 GO:0008168
GO:0030488
GO:0051539
GO:0070475
AF-A0A7X6ZJZ5-F1-model_v4 Radical SAM protein 0.9367 15 242 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A7Z9MUA2-F1-model_v4 Radical SAM protein 0.9355 14 228 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A3D0H169-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9322 11 224 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A832GJP0-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.926 11 228 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475

Map