F034166

General Info

Members Datasets Scaffolds Average Seq Length
105 47 210 374

Family's Representative Sequence

Representative Sequence 3300047469|Ga0495673_0002621|Ga0495673_0002621_3694_4989
Length 404
Sequence MSQIDPAIKAFAVTERQVEYIDAVIAQGSIGAAERELGVSAGVIARVVRTLKARLLESQRQEAIQPRGTAGFVARELTTAYDEQGNESGSWLREGPAATCAPGGVDEGPERTKLDDVRRAELMKAAAVAMAEDLPRVAPIARPLSTQVELCNLYTLTDCHMGMLAWHKEGGDDWDISIAERTLVGCFEQMIAAAPAAQTAIVNQLGDFLHYDSLTAVTPSHGHILDADGRFSKMVAATIRTLRKIVDIALMRHARVIVILAEGNHDMASSVWLRHMFKALYEDEPRVVIDDSELPYYVHQHGAVMLGFHHGHLSKKHQLPLLFAAQHAVIWGATTKRYIHTGHEHHVDEKEHAGVTVIQHPTLAARDAYAARGGWISERQATAMTYHTKFGLVARNTVTPEMLG

Samples

Sample ID Description Type Environment
1 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
4 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
5 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
8 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
9 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
10 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
11 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
12 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
13 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
14 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
17 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
18 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
21 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
22 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
23 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
24 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
25 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
26 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
27 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
28 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
29 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
30 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
31 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
32 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
33 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
34 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
35 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
36 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
37 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
38 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
39 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
40 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
41 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
42 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
43 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
44 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
45 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
46 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
47 2900577576 Ralstonia sp. TCR112 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.05
Metatranscriptomes 0
Isolates 0.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 5.71
Rhizosphere 93.33
Stem 0
Stem Tuber 0
Unclassified 3.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495673_0002621 3300047469 Bacteria 12469
2 rootH1_10018780 3300003323 Bacteria 32668
3 Ga0070661_100022612 3300005344 Viruses 4502
4 Ga0068853_100006746 3300005539 Bacteria 9149
5 Ga0068855_100000237 3300005563 Bacteria 70367
6 Ga0068856_100000544 3300005614 Bacteria 41634
7 Ga0068856_100011497 3300005614 Bacteria 8593
8 Ga0068856_100323895 3300005614 Viruses 1558
9 Ga0105240_10001202 3300009093 Bacteria 45127
10 Ga0105239_10013095 3300010375 Bacteria 9218
11 Ga0157373_10000733 3300013100 Bacteria 25527
12 Ga0157370_10038343 3300013104 Bacteria 4636
13 Ga0157369_10008016 3300013105 Bacteria 12128
14 Ga0163162_10508695 3300013306 Bacteria 1334
15 Ga0157372_10026802 3300013307 Bacteria 6274
16 Ga0207695_10005884 3300025913 Bacteria 16088
17 Ga0207649_10000244 3300025920 Bacteria 44088
18 Ga0207667_10000280 3300025949 Bacteria 70385
19 Ga0207639_10032092 3300026041 Bacteria 3864
20 Ga0207702_10000552 3300026078 Bacteria 41657
21 Ga0207702_10000636 3300026078 Bacteria 38380
22 Ga0207702_10008465 3300026078 Bacteria 8675
23 Ga0207702_10313549 3300026078 Viruses 1492
24 Ga0207674_10042238 3300026116 Viruses 4711
25 Ga0307414_10000190 3300032004 Bacteria 41439
26 Ga0395899_0000891 3300037312 Bacteria 28314
27 Ga0395899_0032012 3300037312 Unclassified 3951
28 Ga0395899_0035086 3300037312 Viruses 3766
29 Ga0395899_0038262 3300037312 Bacteria 3593
30 Ga0395900_0001275 3300037418 Bacteria 30812
31 Ga0395900_0002211 3300037418 Bacteria 21732
32 Ga0395900_0003315 3300037418 Bacteria 17411
33 Ga0395900_0003472 3300037418 Bacteria 17016
34 Ga0395900_0003698 3300037418 Bacteria 16436
35 Ga0395900_0004963 3300037418 Bacteria 13996
36 Ga0395900_0007217 3300037418 Bacteria 11511
37 Ga0395900_0026679 3300037418 Bacteria 5914
38 Ga0395900_0067487 3300037418 Viruses 3674
39 Ga0395900_0095509 3300037418 Bacteria 3054
40 Ga0395900_0113463 3300037418 Viruses 2781
41 Ga0395900_0130234 3300037418 Bacteria 2578
42 Ga0395900_0155311 3300037418 Unclassified 2337
43 Ga0395900_0179279 3300037418 Bacteria 2154
44 Ga0395900_0213890 3300037418 Viruses 1946
45 Ga0395900_0275578 3300037418 Viruses 1676
46 Ga0395900_0436958 3300037418 Bacteria 1267
47 Ga0395898_0001109 3300037466 Bacteria 41482
48 Ga0395898_0001193 3300037466 Bacteria 39290
49 Ga0395898_0001763 3300037466 Bacteria 28342
50 Ga0395898_0001788 3300037466 Bacteria 27945
51 Ga0395898_0003351 3300037466 Bacteria 17975
52 Ga0395898_0004771 3300037466 Bacteria 14754
53 Ga0395898_0006379 3300037466 Bacteria 12600
54 Ga0395898_0009472 3300037466 Bacteria 10230
55 Ga0395898_0016037 3300037466 Bacteria 7673
56 Ga0395898_0052828 3300037466 Bacteria 3969
57 Ga0395898_0080285 3300037466 Bacteria 3146
58 Ga0395898_0106854 3300037466 Unclassified 2684
59 Ga0395898_0119455 3300037466 Bacteria 2525
60 Ga0395905_0000343 3300037471 Bacteria 66241
61 Ga0395905_0006565 3300037471 Bacteria 11687
62 Ga0395905_0009846 3300037471 Bacteria 9316
63 Ga0395905_0025316 3300037471 Bacteria 5596
64 Ga0395905_0050481 3300037471 Bacteria 3897
65 Ga0395905_0058558 3300037471 Bacteria 3602
66 Ga0395905_0137886 3300037471 Bacteria 2295
67 Ga0395901_0001752 3300038443 Bacteria 22404
68 Ga0395901_0006030 3300038443 Bacteria 12281
69 Ga0395901_0009000 3300038443 Bacteria 10110
70 Ga0395901_0009375 3300038443 Bacteria 9930
71 Ga0395901_0030293 3300038443 Bacteria 5574
72 Ga0395901_0060030 3300038443 Bacteria 3956
73 Ga0395901_0132763 3300038443 Bacteria 2616
74 Ga0395901_0305234 3300038443 Bacteria 1649
75 Ga0466966_0000233 3300044684 Bacteria 37109
76 Ga0466966_0025184 3300044684 Viruses 3887
77 Ga0466966_0109411 3300044684 Unclassified 1704
78 Ga0466957_0000106 3300044842 Bacteria 34263
79 Ga0466959_0000095 3300045049 Bacteria 56889
80 Ga0466959_0001992 3300045049 Bacteria 12879
81 Ga0495580_0001595 3300046472 Bacteria 19909
82 Ga0495584_0011214 3300046491 Bacteria 4591
83 Ga0495648_0000228 3300046524 Bacteria 64360
84 Ga0495648_0000443 3300046524 Bacteria 44710
85 Ga0495652_0239269 3300046529 Bacteria 1352
86 Ga0495656_0002035 3300046615 Bacteria 6660
87 Ga0495634_0000856 3300046642 Bacteria 29325
88 Ga0495636_0000244 3300047318 Viruses 21579
89 Ga0495636_0004067 3300047318 Bacteria 5723
90 Ga0495674_0000095 3300047319 Bacteria 64325
91 Ga0495674_0000311 3300047319 Bacteria 42445
92 Ga0495674_0060116 3300047319 Bacteria 3316
93 Ga0495672_0000415 3300047320 Bacteria 51612
94 Ga0495675_0000083 3300047444 Bacteria 66471
95 Ga0495677_0000226 3300047445 Bacteria 25833
96 Ga0495679_000311 3300047446 Bacteria 38920
97 Ga0495679_000388 3300047446 Bacteria 33704
98 Ga0495685_004124 3300047447 Bacteria 4672
99 Ga0496101_0000291 3300048904 Bacteria 34969
100 Ga0496110_0000193 3300048913 Bacteria 38394
101 Ga0496112_0000061 3300048915 Bacteria 73878
102 Ga0496112_0000087 3300048915 Bacteria 60743
103 Ga0496113_0000016 3300048916 Bacteria 75708
104 Ga0496115_0000192 3300048918 Bacteria 56833
105 2900580828 2900577576 Bacteria 5438534
106 Ga0495673_0002621
107 rootH1_10018780
108 Ga0070661_100022612
109 Ga0068853_100006746
110 Ga0068855_100000237
111 Ga0068856_100000544
112 Ga0068856_100011497
113 Ga0068856_100323895
114 Ga0105240_10001202
115 Ga0105239_10013095
116 Ga0157373_10000733
117 Ga0157370_10038343
118 Ga0157369_10008016
119 Ga0163162_10508695
120 Ga0157372_10026802
121 Ga0207695_10005884
122 Ga0207649_10000244
123 Ga0207667_10000280
124 Ga0207639_10032092
125 Ga0207702_10000552
126 Ga0207702_10000636
127 Ga0207702_10008465
128 Ga0207702_10313549
129 Ga0207674_10042238
130 Ga0307414_10000190
131 Ga0395899_0000891
132 Ga0395899_0032012
133 Ga0395899_0035086
134 Ga0395899_0038262
135 Ga0395900_0001275
136 Ga0395900_0002211
137 Ga0395900_0003315
138 Ga0395900_0003472
139 Ga0395900_0003698
140 Ga0395900_0004963
141 Ga0395900_0007217
142 Ga0395900_0026679
143 Ga0395900_0067487
144 Ga0395900_0095509
145 Ga0395900_0113463
146 Ga0395900_0130234
147 Ga0395900_0155311
148 Ga0395900_0179279
149 Ga0395900_0213890
150 Ga0395900_0275578
151 Ga0395900_0436958
152 Ga0395898_0001109
153 Ga0395898_0001193
154 Ga0395898_0001763
155 Ga0395898_0001788
156 Ga0395898_0003351
157 Ga0395898_0004771
158 Ga0395898_0006379
159 Ga0395898_0009472
160 Ga0395898_0016037
161 Ga0395898_0052828
162 Ga0395898_0080285
163 Ga0395898_0106854
164 Ga0395898_0119455
165 Ga0395905_0000343
166 Ga0395905_0006565
167 Ga0395905_0009846
168 Ga0395905_0025316
169 Ga0395905_0050481
170 Ga0395905_0058558
171 Ga0395905_0137886
172 Ga0395901_0001752
173 Ga0395901_0006030
174 Ga0395901_0009000
175 Ga0395901_0009375
176 Ga0395901_0030293
177 Ga0395901_0060030
178 Ga0395901_0132763
179 Ga0395901_0305234
180 Ga0466966_0000233
181 Ga0466966_0025184
182 Ga0466966_0109411
183 Ga0466957_0000106
184 Ga0466959_0000095
185 Ga0466959_0001992
186 Ga0495580_0001595
187 Ga0495584_0011214
188 Ga0495648_0000228
189 Ga0495648_0000443
190 Ga0495652_0239269
191 Ga0495656_0002035
192 Ga0495634_0000856
193 Ga0495636_0000244
194 Ga0495636_0004067
195 Ga0495674_0000095
196 Ga0495674_0000311
197 Ga0495674_0060116
198 Ga0495672_0000415
199 Ga0495675_0000083
200 Ga0495677_0000226
201 Ga0495679_000311
202 Ga0495679_000388
203 Ga0495685_004124
204 Ga0496101_0000291
205 Ga0496110_0000193
206 Ga0496112_0000061
207 Ga0496112_0000087
208 Ga0496113_0000016
209 Ga0496115_0000192
210 2900580828

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
7r3i-assembly1.cif.gz_A pross optimitzed variant of rhlr (61 mutations) in complex with the synthetic antagonist mbtl 0.8758 8 51
1fse-assembly2.cif.gz_C crystal structure of the bacillus subtilis regulatory protein gere 0.8737 7 51
7r3g-assembly1.cif.gz_B pross optimitzed variant of rhlr (75 mutations) in complex with the synthetic antagonist mbtl 0.8634 8 51
1fse-assembly1.cif.gz_A crystal structure of the bacillus subtilis regulatory protein gere 0.8535 8 51
1b9n-assembly1.cif.gz_B regulator from escherichia coli 0.8522 7 51
ID Description Score Start End Superfamily
af_P0ACR0_3_94_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9653 9 51 1.10.10.10
af_P77700_7_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9577 11 51 1.10.10.10
af_P23841_7_96_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9337 11 51 1.10.10.10
af_P0ACQ4_1_84_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9285 11 51 1.10.10.10
af_P9WMF5_6_80_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9258 11 51 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0R0CH79-F1-model_v4 Calcineurin-like phosphoesterase domain-containing protein 0.9441 218 383
AF-A0A353PE30-F1-model_v4 Winged helix-turn-helix domain-containing protein 0.9414 133 383
AF-A0A3S3U886-F1-model_v4 Uncharacterized protein 0.9411 252 377
AF-A0A6A6K4Z8-F1-model_v4 Calcineurin-like phosphoesterase domain-containing protein 0.9378 109 372
AF-X0TQB2-F1-model_v4 Uncharacterized protein 0.9372 217 317

Map