F020040

General Info

Members Datasets Scaffolds Average Seq Length
103 78 206 443

Family's Representative Sequence

Representative Sequence 3300006051|Ga0075364_10091721|Ga0075364_100917212
Length 509
Sequence MAKPRSVFRCSDCGTSAPKWVGRCPGCEEWNTLVEELEVPASASTAALLGPSDRPVPISEVDVDEWTARATGIGELDRVLGGGLVPGSVTLVGGEPGIGKSTLLLQAVASIAADGAKVLYVSAEESKQQVRLRAERLGSLRPSLWLASETSVPHILDFVDEVQPEVLVVDSIQTVHHPDVGSAPGSVAQVRESASRLVTAAKSRGLAVVLVGHVTKDGGLAGPRVLEHVVDTVLAFEGDRHHALRLLRAAKHRFGATDQLGLFEMTDRGLIGVPDPSRLFLADRRKGVSGSVVVPTMEGHRPLLVELQALVTPSRLASPRRSAQGLDSGRLSLLLAVLGERAGCSFAEADVYALAVGGVRIAEPAADLGVALALASALVGVPVPADLVVCGEVGLGGELRQVSQTDRRLAEAARLGFGRALLPRLAPDPPAGIAAVRVATLAEAIDAAGLDLDRRGHPSGAGHPARHGSAGDGPARSHERDPWAAPRLRAVDPSEIPDTVPDDLFEDPF

Samples

Sample ID Description Type Environment
1 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
9 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
12 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
13 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
14 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
15 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
16 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
17 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
24 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
25 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
26 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
27 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
28 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
29 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
30 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
31 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
32 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
33 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
34 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
35 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
36 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
37 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
38 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
39 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
40 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
41 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
42 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
43 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
44 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
45 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
46 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
47 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
48 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
49 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
50 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
51 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
52 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
53 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
54 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
55 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
57 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
59 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
60 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
61 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
62 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
63 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
64 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
65 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
67 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
68 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
69 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
70 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
71 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
72 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
73 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
74 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
75 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
76 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
77 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
78 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.09
Metatranscriptomes 0
Isolates 2.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.65
Nodule 0
Rhizoplane 7.77
Rhizosphere 75.73
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075364_10091721 3300006051 Bacteria 2016
2 rootH2_10023050 3300003320 Bacteria 14642
3 Ga0070689_100024971 3300005340 Bacteria 4486
4 Ga0070675_100000009 3300005354 Bacteria 245759
5 Ga0070671_100000683 3300005355 Bacteria 24356
6 Ga0070688_100104969 3300005365 Bacteria 1870
7 Ga0070708_100000635 3300005445 Bacteria 26516
8 Ga0068863_100048310 3300005841 Bacteria 4035
9 Ga0068858_100009361 3300005842 Bacteria 9350
10 Ga0068858_100073059 3300005842 Bacteria 3184
11 Ga0075365_10072628 3300006038 Bacteria 2318
12 Ga0075364_10005952 3300006051 Bacteria 7132
13 Ga0075364_10086377 3300006051 Bacteria 2078
14 Ga0068865_100036146 3300006881 Bacteria 3328
15 Ga0105247_10123549 3300009101 Bacteria 1680
16 Ga0105242_10006052 3300009176 Bacteria 9324
17 Ga0163163_10045166 3300014325 Bacteria 4324
18 Ga0157379_10101069 3300014968 Bacteria 2588
19 Ga0213876_10022776 3300021384 Bacteria 3310
20 Ga0207659_10000007 3300025926 Bacteria 322984
21 Ga0207704_10042571 3300025938 Bacteria 2675
22 Ga0207712_10035975 3300025961 Bacteria 3369
23 Ga0207703_10047085 3300026035 Bacteria 3476
24 Ga0207703_10049169 3300026035 Bacteria 3408
25 Ga0207703_10084413 3300026035 Bacteria 2656
26 Ga0207648_10003477 3300026089 Bacteria 16513
27 Ga0268264_10017436 3300028381 Bacteria 5880
28 Ga0268264_10284004 3300028381 Bacteria 1552
29 Ga0265338_10000435 3300028800 Bacteria 75064
30 Ga0265338_10021018 3300028800 Bacteria 6828
31 Ga0265338_10046576 3300028800 Bacteria 3973
32 Ga0265325_10000438 3300031241 Bacteria 29881
33 Ga0265339_10001874 3300031249 Bacteria 15433
34 Ga0265327_10004390 3300031251 Bacteria 12517
35 Ga0265316_10066894 3300031344 Bacteria 2779
36 Ga0265313_10003793 3300031595 Bacteria 11983
37 Ga0316579_10001317 3300031691 Bacteria 8975
38 Ga0265314_10044652 3300031711 Bacteria 3140
39 Ga0316577_10009023 3300031733 Bacteria 5352
40 Ga0307410_10018293 3300031852 Bacteria 4232
41 Ga0316583_10020288 3300032133 Bacteria 2382
42 Ga0316583_10043464 3300032133 Bacteria 1587
43 Ga0373930_0008685 3300034816 Bacteria 1782
44 Ga0373932_0006070 3300035112 Bacteria 2851
45 Ga0373931_0000006 3300035691 Bacteria 437006
46 Ga0373931_0000203 3300035691 Bacteria 25193
47 Ga0373937_0019147 3300036401 Bacteria 6127
48 Ga0436365_0745586 3300039437 Bacteria 4965
49 Ga0436365_1248956 3300039437 Bacteria 15078
50 Ga0436362_0361259 3300039453 Bacteria 9866
51 Ga0451577_0027002 3300042876 Bacteria 5197
52 Ga0453684_0007124 3300044712 Bacteria 20833
53 Ga0453684_0033451 3300044712 Bacteria 7167
54 Ga0495629_0045837 3300046459 Bacteria 3067
55 Ga0495657_0021850 3300046675 Bacteria 4590
56 Ga0495623_0025747 3300046679 Bacteria 3789
57 Ga0495680_0190408 3300047322 Bacteria 1476
58 Ga0495675_0084162 3300047444 Bacteria 2002
59 Ga0496105_0033553 3300048908 Bacteria 4216
60 Ga0496109_0002986 3300048912 Bacteria 14133
61 Ga0496109_0192978 3300048912 Bacteria 1914
62 Ga0496110_0150559 3300048913 Bacteria 2107
63 Ga0496111_0012004 3300048914 Bacteria 5856
64 Ga0496111_0042876 3300048914 Bacteria 3250
65 Ga0496111_0061357 3300048914 Bacteria 2726
66 Ga0496112_0006878 3300048915 Bacteria 10029
67 Ga0496125_0001666 3300048928 Bacteria 31210
68 Ga0501032_0002058 3300049569 Bacteria 15882
69 Ga0501033_0017516 3300049570 Bacteria 5412
70 Ga0501033_0045529 3300049570 Bacteria 3265
71 Ga0501034_0000522 3300049571 Bacteria 61655
72 Ga0501034_0044891 3300049571 Bacteria 4467
73 Ga0501034_0045517 3300049571 Bacteria 4433
74 Ga0501034_0051047 3300049571 Bacteria 4171
75 Ga0501037_0001191 3300049573 Bacteria 19226
76 Ga0501039_0059653 3300049575 Bacteria 2955
77 Ga0501047_0042628 3300049581 Bacteria 4385
78 Ga0501047_0045874 3300049581 Bacteria 4225
79 Ga0501067_0018870 3300049583 Bacteria 3815
80 Ga0501069_0000119 3300049585 Bacteria 34987
81 Ga0501073_0034551 3300049589 Bacteria 3598
82 Ga0501074_0016627 3300049590 Bacteria 5339
83 Ga0501075_0013929 3300049591 Bacteria 5754
84 Ga0501080_0019465 3300049742 Bacteria 6286
85 Ga0501080_0052722 3300049742 Bacteria 3786
86 Ga0501035_0131510 3300049822 Bacteria 2181
87 Ga0501044_0002892 3300049823 Bacteria 19552
88 Ga0501044_0008648 3300049823 Bacteria 11151
89 nmdc:mga00v17_30830_c1 3300050491 Bacteria 3157
90 nmdc:mga00v17_37631_c1 3300050491 Bacteria 2891
91 nmdc:mga0yw44_31949_c1 3300050492 Bacteria 3065
92 nmdc:mga0yw44_734_c1 3300050492 Bacteria 12085
93 nmdc:mga08y16_176938_c1 3300050511 Bacteria 2215
94 Ga0495601_0177864 3300053077 Bacteria 1391
95 Ga0500643_001826 3300053087 Bacteria 11631
96 Ga0500568_0005219 3300053139 Bacteria 6764
97 Ga0500616_0001205 3300053153 Bacteria 26212
98 Ga0500616_0002033 3300053153 Bacteria 17840
99 Ga0501084_0000356 3300054114 Bacteria 34891
100 Ga0530510_0001469 3300061734 Bacteria 15820
101 2795792017 2795385472 Bacteria 6627535
102 2956940866 2956939328 Bacteria 3474458
103 3001120555 3001119090 Bacteria 3449530
104 Ga0075364_10091721
105 rootH2_10023050
106 Ga0070689_100024971
107 Ga0070675_100000009
108 Ga0070671_100000683
109 Ga0070688_100104969
110 Ga0070708_100000635
111 Ga0068863_100048310
112 Ga0068858_100009361
113 Ga0068858_100073059
114 Ga0075365_10072628
115 Ga0075364_10005952
116 Ga0075364_10086377
117 Ga0068865_100036146
118 Ga0105247_10123549
119 Ga0105242_10006052
120 Ga0163163_10045166
121 Ga0157379_10101069
122 Ga0213876_10022776
123 Ga0207659_10000007
124 Ga0207704_10042571
125 Ga0207712_10035975
126 Ga0207703_10047085
127 Ga0207703_10049169
128 Ga0207703_10084413
129 Ga0207648_10003477
130 Ga0268264_10017436
131 Ga0268264_10284004
132 Ga0265338_10000435
133 Ga0265338_10021018
134 Ga0265338_10046576
135 Ga0265325_10000438
136 Ga0265339_10001874
137 Ga0265327_10004390
138 Ga0265316_10066894
139 Ga0265313_10003793
140 Ga0316579_10001317
141 Ga0265314_10044652
142 Ga0316577_10009023
143 Ga0307410_10018293
144 Ga0316583_10020288
145 Ga0316583_10043464
146 Ga0373930_0008685
147 Ga0373932_0006070
148 Ga0373931_0000006
149 Ga0373931_0000203
150 Ga0373937_0019147
151 Ga0436365_0745586
152 Ga0436365_1248956
153 Ga0436362_0361259
154 Ga0451577_0027002
155 Ga0453684_0007124
156 Ga0453684_0033451
157 Ga0495629_0045837
158 Ga0495657_0021850
159 Ga0495623_0025747
160 Ga0495680_0190408
161 Ga0495675_0084162
162 Ga0496105_0033553
163 Ga0496109_0002986
164 Ga0496109_0192978
165 Ga0496110_0150559
166 Ga0496111_0012004
167 Ga0496111_0042876
168 Ga0496111_0061357
169 Ga0496112_0006878
170 Ga0496125_0001666
171 Ga0501032_0002058
172 Ga0501033_0017516
173 Ga0501033_0045529
174 Ga0501034_0000522
175 Ga0501034_0044891
176 Ga0501034_0045517
177 Ga0501034_0051047
178 Ga0501037_0001191
179 Ga0501039_0059653
180 Ga0501047_0042628
181 Ga0501047_0045874
182 Ga0501067_0018870
183 Ga0501069_0000119
184 Ga0501073_0034551
185 Ga0501074_0016627
186 Ga0501075_0013929
187 Ga0501080_0019465
188 Ga0501080_0052722
189 Ga0501035_0131510
190 Ga0501044_0002892
191 Ga0501044_0008648
192 nmdc:mga00v17_30830_c1
193 nmdc:mga00v17_37631_c1
194 nmdc:mga0yw44_31949_c1
195 nmdc:mga0yw44_734_c1
196 nmdc:mga08y16_176938_c1
197 Ga0495601_0177864
198 Ga0500643_001826
199 Ga0500568_0005219
200 Ga0500616_0001205
201 Ga0500616_0002033
202 Ga0501084_0000356
203 Ga0530510_0001469
204 2795792017
205 2956940866
206 3001120555

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF18073

Rubredoxin_2

Rubredoxin metal binding domain

8

35

0.98

PF06745

ATPase

KaiC

69

142

0.94

PF03796

DnaB_C

DnaB-like helicase C terminal domain

69

140

0.9

PF13481

AAA_25

AAA domain

53

219

0.81

PF13401

AAA_22

AAA domain

86

215

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
5h45-assembly1.cif.gz_B crystal structure of the c-terminal lon protease-like domain of thermus thermophilus rada/sms 0.9474 292 456
5lkq-assembly1.cif.gz_B protease domain of rada 0.9401 286 456
5h45-assembly1.cif.gz_B crystal structure of the c-terminal lon protease-like domain of thermus thermophilus rada/sms 0.9181 292 456
5lkq-assembly1.cif.gz_B protease domain of rada 0.9043 286 456
8dvh-assembly1.cif.gz_B crystal structure of atp-dependent lon protease from bacillus subtillis (bslonba) 0.8985 294 456
ID Description Score Start End Superfamily
af_P9WHJ9_288_461_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9718 294 459 3.30.230.10
af_P24554_64_278_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9691 67 280 3.40.50.300
af_P9WHJ9_62_274_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9687 68 280 3.40.50.300
af_Q2G243_272_444_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9637 292 456 3.30.230.10
af_P24554_314_459_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9511 317 458 3.30.230.10
ID Description Score Start End GO Terms
AF-K1S9P6-F1-model_v4 DNA repair protein RadA 0.9929 327 429 GO:0000725
GO:0005829
AF-W1XIA3-F1-model_v4 DNA repair protein RadA 0.9916 301 410 GO:0000725
GO:0005829
AF-T1A795-F1-model_v4 DNA repair protein RadA 0.9884 312 404 GO:0000725
GO:0005829
AF-A0A661AF02-F1-model_v4 DNA repair protein RadA 0.9828 297 456 GO:0000725
GO:0004176
GO:0004252
GO:0005829
GO:0006508
AF-W1XIA3-F1-model_v4 DNA repair protein RadA 0.9827 301 410 GO:0000725
GO:0005829

Map