F016584

General Info

Members Datasets Scaffolds Average Seq Length
102 92 204 469

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0159252|Ga0466967_0159252_507_1943
Length 471
Sequence MRTGPALREFFRRKPIDQIQDESATTLHRTLGLWQLTAIGVGGIIGAGIFTLAGAVANQTAGPAVLVSFLIAGIASAAAALSYAEFAGLIPRAGSAYTYGYAVLGEPVGWFIGWDLLLEYTAIVSVVAIGISGYIQFLLGQWDIGLPEWMLGAPGTGHGHVVDLFAALLCLLIAALLNLGIRAAARFETFVVGLKIVVGFFHIDSANYHPYFPFGMSGAVTGAATVFFAVFGYDAMSTAAEESVDAKRHLPKAILLSLAVSMVLYVLVCLVLTGMQHYTDIDPESGLSTAFESVGLPGLGSLIAAGAIVGIMTVLFTFMLGVTRVWYSMSRDGLLPRWFAKTHPVRQVPTRITWIVGIASAVIAGLLPIGQAAELTNIGILLAFIVVCAAVIVLRYRRPDLPRGFRTPLMPVVPLLGIGFSIWLITYLQPVTWLRFAVWFAVGAIVYLSYSRRHSLLATGPDASETPAGRP

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
3 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
4 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
5 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
6 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
7 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
8 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
9 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
10 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
11 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
12 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
14 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
15 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
16 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
17 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
18 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
19 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
20 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
21 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
22 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
23 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
24 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
25 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
26 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
27 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
28 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
29 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
30 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
31 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
32 2547132424 Nocardia nova SH22a Isolate Unclassified
33 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
34 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
35 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
36 2643221679 Angustibacter sp. Root456 Isolate Unclassified
37 2643221692 Nocardia sp. Root136 Isolate Unclassified
38 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
39 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
40 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
41 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
42 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
43 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
44 2808606448 Streptomyces sp. 193411 Isolate Unclassified
45 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
46 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
47 2855683550 Micromonospora sp. RP3T Isolate Unclassified
48 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
49 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
50 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
51 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
52 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
53 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
54 2867475112 Streptomyces sp. TM32 Isolate Unclassified
55 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
56 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
57 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
58 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
59 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
60 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
61 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
62 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
63 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
64 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
65 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
66 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
67 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
68 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
69 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
70 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
71 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
72 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
73 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
74 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
75 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
76 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
77 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
78 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
79 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
80 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
81 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
82 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
83 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
84 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
85 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
86 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
87 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
88 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
89 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
90 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
91 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
92 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 36.27
Metatranscriptomes 0
Isolates 63.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.98
Nodule 0.98
Rhizoplane 0
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0159252 3300045976 Bacteria 2118
2 Ga0070668_100003303 3300005347 Bacteria 11900
3 Ga0070714_100244999 3300005435 Bacteria 1656
4 Ga0070663_100000197 3300005455 Bacteria 30053
5 Ga0068858_100047998 3300005842 Bacteria 3957
6 Ga0068860_100099751 3300005843 Bacteria 2770
7 Ga0114129_10110167 3300009147 Bacteria 3801
8 Ga0207426_1000911 3300025302 Bacteria 29649
9 Ga0207664_10067086 3300025929 Bacteria 2878
10 Ga0207668_10010542 3300025972 Bacteria 5587
11 Ga0207703_10161928 3300026035 Bacteria 1960
12 Ga0207678_10000250 3300026067 Bacteria 48489
13 Ga0307513_10025304 3300031456 Bacteria 6881
14 Ga0307513_10072644 3300031456 Bacteria 3585
15 Ga0307509_10091273 3300031507 Bacteria 3118
16 Ga0307408_100093589 3300031548 Bacteria 2274
17 Ga0307516_10000623 3300031730 Bacteria 47736
18 Ga0307410_10152058 3300031852 Bacteria 1724
19 Ga0307409_100057680 3300031995 Bacteria 3010
20 Ga0307411_10064528 3300032005 Bacteria 2452
21 Ga0307411_10114814 3300032005 Bacteria 1936
22 Ga0307415_100005612 3300032126 Bacteria 6680
23 Ga0395900_0177352 3300037418 Bacteria 2167
24 Ga0395898_0015254 3300037466 Bacteria 7884
25 Ga0395898_0031708 3300037466 Bacteria 5278
26 Ga0395901_0063483 3300038443 Bacteria 3844
27 Ga0466972_0003418 3300044658 Bacteria 7876
28 Ga0466972_0003868 3300044658 Bacteria 7454
29 Ga0466972_0009197 3300044658 Bacteria 4963
30 Ga0466965_0028989 3300044683 Bacteria 2692
31 Ga0466970_0010754 3300044765 Bacteria 4652
32 Ga0466967_0042869 3300045976 Bacteria 3914
33 Ga0466967_0092532 3300045976 Bacteria 2749
34 Ga0501033_0004293 3300049570 Bacteria 11451
35 Ga0501034_0270188 3300049571 Bacteria 1641
36 Ga0501038_0004105 3300049574 Bacteria 13543
37 Ga0501047_0010585 3300049581 Bacteria 8723
38 2547412223 2547132111 Bacteria 8013147
39 2548693021 2547132424 Bacteria 8348532
40 2552112548 2551306166 Bacteria 9731570
41 2552112602 2551306166 Bacteria 9731570
42 2554260598 2554235005 Bacteria 6457341
43 2616905723 2616644941 Bacteria 8510691
44 2644447183 2643221679 Bacteria 3839507
45 2644514648 2643221692 Bacteria 7282860
46 2676492711 2675903060 Bacteria 10051191
47 2753264584 2751185782 Bacteria 11227053
48 2753301544 2751185788 Bacteria 4541048
49 2776376515 2775506925 Bacteria 7237746
50 2784592095 2784132148 Bacteria 8627943
51 2791916343 2791354901 Bacteria 8322202
52 2809235779 2808606448 Bacteria 8656184
53 2812354174 2811994879 Bacteria 9313447
54 2835191092 2835188231 Bacteria 3476928
55 2855685886 2855683550 Bacteria 7134265
56 2862296782 2862290372 Bacteria 7471434
57 2862514354 2862507626 Bacteria 9425308
58 2862995144 2862993130 Bacteria 3860849
59 2863068314 2863067949 Bacteria 8541735
60 2866556964 2866552031 Bacteria 5824618
61 2866613996 2866612099 Bacteria 7543886
62 2867476886 2867475112 Bacteria 6909112
63 2873152453 2873151551 Bacteria 8625867
64 2895428651 2895427314 Bacteria 13147766
65 2899362985 2899359706 Bacteria 10940472
66 2899364438 2899359706 Bacteria 10940472
67 2899369583 2899359706 Bacteria 10940472
68 2904433264 2904430863 Bacteria 3486923
69 2904502610 2904501621 Bacteria 3401437
70 2908677707 2908674828 Bacteria 3382763
71 2909075281 2909074476 Bacteria 3436050
72 2912715759 2912715099 Bacteria 9460473
73 2912728691 2912723979 Bacteria 8557534
74 2919040692 2919039151 Bacteria 3391018
75 2919043513 2919042368 Bacteria 3905917
76 2919054047 2919051321 Bacteria 4210889
77 2919717775 2919713450 Bacteria 7431245
78 2928106319 2928104781 Bacteria 3877447
79 2928501482 2928500415 Bacteria 3384541
80 2929220990 2929219909 Bacteria 6984360
81 2947225255 2947224130 Bacteria 9938529
82 2990093422 2990088156 Bacteria 6657676
83 2997455386 2997451912 Bacteria 8492419
84 3003002377 3002998708 Bacteria 11715108
85 3006394239 3006393351 Bacteria 6615579
86 3006493629 3006486233 Bacteria 8157040
87 3006494447 3006493962 Bacteria 8825450
88 8003318357 8003314358 Bacteria 10575343
89 8003832114 8003830390 Bacteria 6541657
90 8003859881 8003856774 Bacteria 7675274
91 8008575707 8008574985 Bacteria 7815457
92 8023630214 8023623736 Bacteria 8593882
93 8025479113 8025478263 Bacteria 8209203
94 8025536153 8025530807 Bacteria 8495698
95 8033687545 8033684223 Bacteria 6906479
96 8047711547 8047710418 Bacteria 11023148
97 8053951649 8053945823 Bacteria 8962862
98 8054163211 8054160619 Bacteria 7783213
99 8055417086 8055412473 Bacteria 6257500
100 8056448825 8056447290 Bacteria 7680491
101 8056668828 8056667051 Bacteria 6953971
102 8056836333 8056829672 Bacteria 9045328
103 Ga0466967_0159252
104 Ga0070668_100003303
105 Ga0070714_100244999
106 Ga0070663_100000197
107 Ga0068858_100047998
108 Ga0068860_100099751
109 Ga0114129_10110167
110 Ga0207426_1000911
111 Ga0207664_10067086
112 Ga0207668_10010542
113 Ga0207703_10161928
114 Ga0207678_10000250
115 Ga0307513_10025304
116 Ga0307513_10072644
117 Ga0307509_10091273
118 Ga0307408_100093589
119 Ga0307516_10000623
120 Ga0307410_10152058
121 Ga0307409_100057680
122 Ga0307411_10064528
123 Ga0307411_10114814
124 Ga0307415_100005612
125 Ga0395900_0177352
126 Ga0395898_0015254
127 Ga0395898_0031708
128 Ga0395901_0063483
129 Ga0466972_0003418
130 Ga0466972_0003868
131 Ga0466972_0009197
132 Ga0466965_0028989
133 Ga0466970_0010754
134 Ga0466967_0042869
135 Ga0466967_0092532
136 Ga0501033_0004293
137 Ga0501034_0270188
138 Ga0501038_0004105
139 Ga0501047_0010585
140 2547412223
141 2548693021
142 2552112548
143 2552112602
144 2554260598
145 2616905723
146 2644447183
147 2644514648
148 2676492711
149 2753264584
150 2753301544
151 2776376515
152 2784592095
153 2791916343
154 2809235779
155 2812354174
156 2835191092
157 2855685886
158 2862296782
159 2862514354
160 2862995144
161 2863068314
162 2866556964
163 2866613996
164 2867476886
165 2873152453
166 2895428651
167 2899362985
168 2899364438
169 2899369583
170 2904433264
171 2904502610
172 2908677707
173 2909075281
174 2912715759
175 2912728691
176 2919040692
177 2919043513
178 2919054047
179 2919717775
180 2928106319
181 2928501482
182 2929220990
183 2947225255
184 2990093422
185 2997455386
186 3003002377
187 3006394239
188 3006493629
189 3006494447
190 8003318357
191 8003832114
192 8003859881
193 8008575707
194 8023630214
195 8025479113
196 8025536153
197 8033687545
198 8047711547
199 8053951649
200 8054163211
201 8055417086
202 8056448825
203 8056668828
204 8056836333

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13906

AA_permease_C

C-terminus of AA_permease

405

455

0.99

PF00324

AA_permease

Amino acid permease

35

450

0.86

PF13520

AA_permease_2

Amino acid permease

31

449

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f34-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue bound to arginine. 0.8225 13 453
5oqt-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue 0.8179 13 453
6f34-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue bound to arginine. 0.793 13 453
5oqt-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue 0.7917 13 453
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.7586 37 450
ID Description Score Start End Superfamily
af_Q2G1Y2_23_478_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8393 32 454 1.20.1740.10
af_P71892_30_474_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8285 31 454 1.20.1740.10
af_Q4CYX3_37_503_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8114 33 454 1.20.1740.10
af_O05896_24_492_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8011 31 461 1.20.1740.10
af_Q0JBB8_3_335_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7951 107 443 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A4U3B1Y3-F1-model_v4 deleted 0.9092 92 373
AF-A0A4U3B1Y3-F1-model_v4 deleted 0.9001 92 373
AF-A0A4Q4CM54-F1-model_v4 Amino acid permease 0.8946 254 454 GO:0015171
GO:0016020
AF-A0A2L2X4S5-F1-model_v4 Basic amino acid/polyamine antiporter, APA family 0.8741 162 448 GO:0015171
GO:0016020
AF-A0A4U3B1M4-F1-model_v4 deleted 0.8734 279 454

Map