F417333

General Info

Members Datasets Scaffolds Average Seq Length
347 262 694 281

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2585427594|2585847097
Length 319
Sequence ATRQKNIVRGCNKSWVARVPTSGMRRTRTSKPIMATLDDHSDAPPVPPNQIFIRRHSLVTRITHWINVLCLSLLLMSGLQIFNAHPSLYWGQYGADADPSWLSIGTVEQDGGKRGVLTVGDVQFNTTGLLGLSGVGDGASERGFPAWSTIPSYQDLATGRRWHFSFAWLFVINGSLYALYGFVRGHFRRDLAPTAEQLTPRHLGREIADHARLRFPKGEQARHYNALQKLAYLIVIFVMLPLMLATGLTMSPGIDAGYPFLLDLFGGRQSARSIHFICAWSIVVFVIIHVTMVILSGLWNNMRSMITGRYSIETERGKP

Samples

Sample ID Description Type Environment
1 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
9 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
10 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
11 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
12 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
13 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
16 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
17 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
18 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
19 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
27 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300009763 Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix Metagenome Nodule
42 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
43 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
50 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
53 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
54 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
58 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
77 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
80 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
81 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
82 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
83 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
86 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
87 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
88 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
89 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
90 3300041503 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG Metagenome Unclassified
91 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
92 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
93 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
94 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
95 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
96 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
97 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
98 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
99 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
100 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
101 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
102 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
103 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
104 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
105 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
106 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
107 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
108 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
109 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
110 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
111 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
112 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
113 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
114 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
115 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
116 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
117 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
118 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
119 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
120 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
121 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
122 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
123 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
124 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
125 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
126 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
127 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
128 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
129 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
130 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
131 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
132 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
133 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
134 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
135 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
136 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
137 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
138 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
139 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
140 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
141 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
142 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
153 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
154 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
155 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
156 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
157 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
158 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
160 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
161 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
162 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
163 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
164 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
165 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
166 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
167 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
168 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
169 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
170 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
171 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
172 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
173 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
174 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
175 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
176 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
177 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
178 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
179 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
180 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
181 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
182 2585427594 Rhizobium sp. YR528 Isolate Rhizosphere
183 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
184 2509276033 Rhizobium leguminosarum bv. trifolii WSM2012 Isolate Nodule
185 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
186 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
187 2513237085 Rhizobium leguminosarum bv. viciae UPM1137 Isolate Nodule
188 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
189 2515154116 Rhizobium ruizarguesonis Ps8 Isolate Nodule
190 2515154134 Rhizobium gallicum bv. gallicum R602sp Isolate Nodule
191 2516653085 Rhizobium leguminosarum bv. phaseoli 4292 Isolate Nodule
192 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
193 2529292951 Rhizobium sp. CCGE 510 Isolate Nodule
194 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
195 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
196 2582581304 Rhizobium sp. YR519 Isolate Rhizosphere
197 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
198 2585427593 Rhizobium tropici CF286 Isolate Rhizosphere
199 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
200 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
201 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
202 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
203 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
204 2643221568 Rhizobium sp. Root564 Isolate Unclassified
205 2718217927 Rhizobium sp. N324 Isolate Nodule
206 2718218423 Rhizobium sp. N941 Isolate Nodule
207 2721755809 Rhizobium sp. N541 Isolate Nodule
208 2738541293 Rhizobium sp. GV031 Isolate Unclassified
209 2765235942 Rhizobium sp. WYCCWR10014 Isolate Nodule
210 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
211 2791355256 Rhizobium sp. M10 Isolate Nodule
212 2791355259 Rhizobium hidalgonense FH14 Isolate Nodule
213 2838042994 Rhizobium esperanzae SEMIA 4089 Isolate Nodule
214 2838061910 Rhizobium phaseoli L15 Isolate Nodule
215 2838686498 Rhizobium leguminosarum SEMIA 416 Isolate Nodule
216 2838729681 Rhizobium leguminosarum SEMIA 445 Isolate Nodule
217 2838742623 Rhizobium leguminosarum SEMIA 449 Isolate Nodule
218 2841851746 Rhizobium leguminosarum SEMIA 498 Isolate Nodule
219 2841864319 Rhizobium leguminosarum SEMIA 4052 Isolate Nodule
220 2842110456 Rhizobium esperanzae SEMIA 414 Isolate Nodule
221 2842156927 Rhizobium leguminosarum SEMIA 459 Isolate Nodule
222 2842163707 Rhizobium leguminosarum SEMIA 460 Isolate Nodule
223 2842180545 Rhizobium leguminosarum SEMIA 463 Isolate Nodule
224 2842229732 Rhizobium leguminosarum SEMIA 481 Isolate Nodule
225 2842243621 Rhizobium leguminosarum SEMIA 483 Isolate Nodule
226 2842257432 Rhizobium leguminosarum SEMIA 485 Isolate Nodule
227 2842271015 Rhizobium leguminosarum SEMIA 488 Isolate Nodule
228 2842278818 Rhizobium etli SEMIA 489 Isolate Nodule
229 2842298080 Rhizobium leucaenae SEMIA 492 Isolate Nodule
230 2842304105 Rhizobium leguminosarum SEMIA 499 Isolate Nodule
231 2842341865 Rhizobium leguminosarum SEMIA 4011 Isolate Nodule
232 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
233 2842363717 Rhizobium leguminosarum SEMIA 4016 Isolate Nodule
234 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
235 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
236 2844454524 Rhizobium leguminosarum bv. viciae BIHB 1217 Isolate Nodule
237 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
238 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
239 2857516855 Rhizobium sp. R-72456 Isolate Unclassified
240 2919100787 Rhizobium sp. 1399 Isolate Rhizosphere
241 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
242 2933570622 Rhizobium leguminosarum SEMIA 409 Isolate Nodule
243 2933586486 Rhizobium leguminosarum SEMIA 4039 Isolate Nodule
244 2935901341 Rhizobium leguminosarum SEMIA 4082 Isolate Nodule
245 2936375103 Rhizobium changzhiense WYCCWR 11317 Isolate Nodule
246 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
247 3005445848 Rhizobium sp. WYJ-E13 Isolate Unclassified
248 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
249 8005275841 Rhizobium sp. N4311 Isolate Nodule
250 8005282627 Rhizobium phaseoli NC1 Isolate Nodule
251 8005307578 Rhizobium leguminosarum bv. phaseoli LCS0306 Isolate Unclassified
252 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
253 8005376324 Rhizobium changzhiense WYCCWR 11279 Isolate Nodule
254 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
255 8005556819 Rhizobium sp. WYCCWR 11128 Isolate Nodule
256 8005563573 Rhizobium sp. WYCCWR 11152 Isolate Nodule
257 8018163183 Rhizobium sp. WYCCWR 11146 Isolate Nodule
258 8023680758 Rhizobium leguminosarum SARCC-132 Isolate Nodule
259 8024479707 Rhizobium leguminosarum Tri-43 Isolate Nodule
260 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule
261 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
262 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 75.5
Metatranscriptomes 0.29
Isolates 24.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.05
Nodule 19.6
Rhizoplane 5.19
Rhizosphere 39.19
Stem 0
Stem Tuber 0
Unclassified 0.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1000814 3300002739 Bacteria 5947
2 JGI25158J39367_1000847 3300002739 Bacteria 5852
3 JGI25152J39213_1001006 3300002773 Bacteria 13614
4 JGI25152J39213_1001098 3300002773 Bacteria 12680
5 JGI25152J39213_1001742 3300002773 Bacteria 8899
6 JGI25150J39212_1008684 3300002774 Bacteria 1976
7 JGI25159J45721_1000695 3300002987 Bacteria 14706
8 JGI25159J45721_1001396 3300002987 Bacteria 10018
9 JGI25151J46595_10000641 3300003187 Bacteria 30114
10 JGI25153J46596_10001929 3300003215 Bacteria 12323
11 JGI25153J46596_10014949 3300003215 Bacteria 3192
12 rootH2_10248117 3300003320 Bacteria 1449
13 JGI25160J50197_1000022 3300003354 Bacteria 201071
14 JGI25161J50226_1000024 3300003374 Bacteria 152176
15 JGI25161J50226_1000150 3300003374 Bacteria 48475
16 Ga0055526_1001188 3300003771 Bacteria 18860
17 Ga0055528_1008255 3300003790 Bacteria 4494
18 Ga0055528_1011018 3300003790 Bacteria 3625
19 Ga0055528_1020125 3300003790 Bacteria 2178
20 Ga0055540_1000077 3300003792 Bacteria 114283
21 Ga0055540_1002028 3300003792 Bacteria 11222
22 Ga0055540_1002717 3300003792 Bacteria 9111
23 Ga0055543_1000074 3300004625 Bacteria 88424
24 Ga0055543_1000125 3300004625 Bacteria 63343
25 Ga0065165_1000439 3300005262 Bacteria 65347
26 Ga0065165_1006601 3300005262 Bacteria 6022
27 Ga0070670_100134909 3300005331 Bacteria 2133
28 Ga0070680_100168893 3300005336 Bacteria 1840
29 Ga0070682_100009085 3300005337 Bacteria 5619
30 Ga0070660_100073283 3300005339 Bacteria 2677
31 Ga0070691_10057000 3300005341 Bacteria 1874
32 Ga0070708_100373755 3300005445 Bacteria 1344
33 Ga0070663_100011472 3300005455 Bacteria 5565
34 Ga0070681_10003312 3300005458 Bacteria 15048
35 Ga0070681_10101056 3300005458 Bacteria 2829
36 Ga0070706_100360862 3300005467 Bacteria 1354
37 Ga0070679_100085071 3300005530 Bacteria 3150
38 Ga0068853_100055339 3300005539 Bacteria 3420
39 Ga0070695_100234070 3300005545 Bacteria 1329
40 Ga0070693_100056972 3300005547 Bacteria 2257
41 Ga0070664_100019682 3300005564 Bacteria 5554
42 Ga0068859_100141170 3300005617 Bacteria 2482
43 Ga0068858_100024464 3300005842 Bacteria 5626
44 Ga0068862_100061653 3300005844 Bacteria 3224
45 Ga0068862_100098361 3300005844 Bacteria 2556
46 Ga0075365_10019673 3300006038 Bacteria 4173
47 Ga0075364_10000332 3300006051 Bacteria 23468
48 Ga0070712_100511323 3300006175 Bacteria 1008
49 Ga0097620_100141170 3300006931 Bacteria 2482
50 Ga0079104_1000105 3300006946 Bacteria 122989
51 Ga0105240_10928250 3300009093 Bacteria 935
52 Ga0105243_10073006 3300009148 Bacteria 2779
53 Ga0105237_10020199 3300009545 Bacteria 6875
54 Ga0105249_10247701 3300009553 Bacteria 1765
55 Ga0105249_10467495 3300009553 Bacteria 1302
56 Ga0123340_1058881 3300009763 Bacteria 1157
57 Ga0123341_1000044 3300009765 Bacteria 52707
58 Ga0123341_1010161 3300009765 Bacteria 8589
59 Ga0123342_1018344 3300009766 Bacteria 5596
60 Ga0123342_1032246 3300009766 Bacteria 2471
61 Ga0157370_10044759 3300013104 Bacteria 4250
62 Ga0157369_10083885 3300013105 Bacteria 3407
63 Ga0163162_10528232 3300013306 Bacteria 1309
64 Ga0157375_10289912 3300013308 Bacteria 1800
65 Ga0157380_10541931 3300014326 Bacteria 1140
66 Ga0213874_10003233 3300021377 Bacteria 3592
67 Ga0224712_10113814 3300022467 Bacteria 1163
68 Ga0209436_100011 3300025208 Bacteria 139405
69 Ga0209436_108817 3300025208 Bacteria 1972
70 Ga0207425_1000415 3300025245 Bacteria 28739
71 Ga0209129_1000217 3300025258 Bacteria 66227
72 Ga0209129_1000337 3300025258 Bacteria 40559
73 Ga0209129_1001051 3300025258 Bacteria 16303
74 Ga0209129_1002594 3300025258 Bacteria 8651
75 Ga0209673_1000968 3300025273 Bacteria 35620
76 Ga0209673_1012496 3300025273 Bacteria 3415
77 Ga0209673_1012553 3300025273 Bacteria 3405
78 Ga0209130_1000066 3300025284 Bacteria 192626
79 Ga0209130_1000251 3300025284 Bacteria 67741
80 Ga0209676_1005962 3300025292 Bacteria 6163
81 Ga0209025_1000239 3300025294 Bacteria 128436
82 Ga0209025_1017360 3300025294 Bacteria 4160
83 Ga0209564_1000225 3300025295 Bacteria 126209
84 Ga0209758_1000349 3300025297 Bacteria 84164
85 Ga0209758_1000978 3300025297 Bacteria 38444
86 Ga0209758_1001087 3300025297 Bacteria 35294
87 Ga0209758_1008480 3300025297 Bacteria 6640
88 Ga0209050_1005571 3300025298 Bacteria 7831
89 Ga0209050_1009911 3300025298 Bacteria 4784
90 Ga0209256_1001796 3300025299 Bacteria 20243
91 Ga0207426_1000008 3300025302 Bacteria 848730
92 Ga0207426_1000082 3300025302 Bacteria 298939
93 Ga0209051_1000027 3300025303 Bacteria 412172
94 Ga0209051_1002785 3300025303 Bacteria 12056
95 Ga0209051_1004406 3300025303 Bacteria 8698
96 Ga0209257_1002432 3300025304 Bacteria 18537
97 Ga0207654_10035692 3300025911 Bacteria 2772
98 Ga0207671_10205548 3300025914 Bacteria 1539
99 Ga0207660_10139966 3300025917 Bacteria 1849
100 Ga0207660_10260453 3300025917 Bacteria 1371
101 Ga0207657_10046103 3300025919 Bacteria 3819
102 Ga0207681_10076280 3300025923 Bacteria 2354
103 Ga0207709_10204708 3300025935 Bacteria 1412
104 Ga0207689_10114653 3300025942 Bacteria 2215
105 Ga0207679_10128381 3300025945 Bacteria 2030
106 Ga0207712_10091901 3300025961 Bacteria 2236
107 Ga0207678_10000332 3300026067 Bacteria 42422
108 Ga0207683_10261375 3300026121 Bacteria 1580
109 Ga0209281_1000303 3300027111 Bacteria 88888
110 Ga0209371_1007696 3300027312 Bacteria 3704
111 Ga0268265_10013754 3300028380 Bacteria 5507
112 Ga0268256_1005081 3300030500 Bacteria 5259
113 Ga0307516_10000006 3300031730 Bacteria 298586
114 Ga0307405_10003953 3300031731 Bacteria 6933
115 Ga0307406_10086482 3300031901 Bacteria 2099
116 Ga0373955_0112920 3300035172 Bacteria 1572
117 Ga0395905_0010341 3300037471 Bacteria 9082
118 Ga0436363_0915980 3300039450 Bacteria 3469
119 Ga0439465_0000812 3300041413 Bacteria 9827
120 Ga0439465_0014011 3300041413 Bacteria 2496
121 Ga0451802_1528202 3300041460 Bacteria 1299
122 Ga0451837_1035261 3300041494 Bacteria 3101
123 Ga0451845_0069740 3300041501 Bacteria 945
124 Ga0451847_0457945 3300041503 Bacteria 1760
125 Ga0451851_1054191 3300041507 Bacteria 2693
126 Ga0451843_0763961 3300041509 Bacteria 4112
127 Ga0451853_3964379 3300041512 Bacteria 1912
128 Ga0466966_0143521 3300044684 Bacteria 1458
129 Ga0466959_0039411 3300045049 Bacteria 3491
130 Ga0495617_102237 3300046452 Bacteria 931
131 Ga0495651_0138060 3300046462 Bacteria 1772
132 Ga0495650_0046881 3300046471 Bacteria 1811
133 Ga0495607_0070995 3300046501 Bacteria 1943
134 Ga0495583_0001176 3300046506 Bacteria 28259
135 Ga0495583_0091800 3300046506 Bacteria 1306
136 Ga0495606_0004066 3300046507 Bacteria 14886
137 Ga0495606_0010822 3300046507 Bacteria 7517
138 Ga0495606_0132006 3300046507 Bacteria 1484
139 Ga0495610_0000467 3300046512 Bacteria 41686
140 Ga0495610_0028978 3300046512 Bacteria 2922
141 Ga0495610_0055224 3300046512 Bacteria 1915
142 Ga0495610_0067929 3300046512 Bacteria 1672
143 Ga0495620_0039584 3300046515 Bacteria 2082
144 Ga0495632_0004177 3300046519 Bacteria 9886
145 Ga0495632_0008093 3300046519 Bacteria 6509
146 Ga0495643_0006525 3300046522 Bacteria 7675
147 Ga0495643_0017925 3300046522 Bacteria 4128
148 Ga0495643_0098029 3300046522 Bacteria 1505
149 Ga0495648_0012686 3300046524 Bacteria 6266
150 Ga0495654_0000152 3300046530 Bacteria 70943
151 Ga0495640_0075502 3300046533 Bacteria 2251
152 Ga0495640_0143211 3300046533 Bacteria 1540
153 Ga0495587_0087046 3300046536 Bacteria 1808
154 Ga0495587_0195215 3300046536 Bacteria 1145
155 Ga0495588_0099554 3300046674 Bacteria 1527
156 Ga0495649_0140382 3300046694 Bacteria 1272
157 Ga0495600_0012444 3300046809 Bacteria 5321
158 Ga0495660_0020717 3300046810 Bacteria 3769
159 Ga0495604_0040770 3300047317 Bacteria 3644
160 Ga0495604_0076241 3300047317 Bacteria 2522
161 Ga0495680_0115933 3300047322 Bacteria 1982
162 Ga0495687_058148 3300047443 Bacteria 1605
163 Ga0495684_0201201 3300047471 Bacteria 1468
164 Ga0495686_0000090 3300047472 Bacteria 193179
165 Ga0495686_0034565 3300047472 Bacteria 3254
166 Ga0495686_0054329 3300047472 Bacteria 2508
167 Ga0495686_0070580 3300047472 Bacteria 2152
168 Ga0495686_0116064 3300047472 Bacteria 1600
169 Ga0495626_0030388 3300048091 Bacteria 2606
170 Ga0495626_0126779 3300048091 Bacteria 1093
171 Ga0496101_0158876 3300048904 Bacteria 1733
172 Ga0496101_0297643 3300048904 Bacteria 1263
173 Ga0496102_0011143 3300048905 Bacteria 7744
174 Ga0496102_0283250 3300048905 Bacteria 1562
175 Ga0496104_0030885 3300048907 Bacteria 4981
176 Ga0496104_0068408 3300048907 Bacteria 3375
177 Ga0496105_0043553 3300048908 Bacteria 3702
178 Ga0496106_0001167 3300048909 Bacteria 19524
179 Ga0496106_0030763 3300048909 Bacteria 4001
180 Ga0496108_0288056 3300048911 Bacteria 1430
181 Ga0496110_0173422 3300048913 Bacteria 1957
182 Ga0496110_0603568 3300048913 Bacteria 995
183 Ga0496111_0102975 3300048914 Bacteria 2099
184 Ga0496113_0042275 3300048916 Bacteria 3367
185 Ga0496114_0018656 3300048917 Bacteria 5612
186 Ga0496115_0007865 3300048918 Bacteria 7862
187 Ga0496116_0000407 3300048919 Bacteria 61995
188 Ga0496116_0061630 3300048919 Bacteria 2427
189 Ga0496116_0074762 3300048919 Bacteria 2129
190 Ga0496117_0012723 3300048920 Bacteria 7388
191 Ga0496117_0065087 3300048920 Bacteria 2481
192 Ga0496118_0007812 3300048921 Bacteria 11222
193 Ga0496118_0049387 3300048921 Bacteria 3240
194 Ga0496119_0031427 3300048922 Bacteria 3561
195 Ga0496119_0052563 3300048922 Bacteria 2494
196 Ga0496121_0019771 3300048924 Bacteria 6712
197 Ga0496121_0023911 3300048924 Bacteria 5860
198 Ga0496121_0043647 3300048924 Bacteria 3879
199 Ga0496121_0094034 3300048924 Bacteria 2333
200 Ga0496122_0020698 3300048925 Bacteria 5926
201 Ga0496122_0048185 3300048925 Bacteria 3280
202 Ga0496122_0119223 3300048925 Bacteria 1707
203 Ga0496123_0005889 3300048926 Bacteria 12116
204 Ga0496123_0058820 3300048926 Bacteria 2490
205 Ga0496124_0000072 3300048927 Bacteria 219914
206 Ga0496124_0069207 3300048927 Bacteria 2931
207 Ga0496124_0264256 3300048927 Bacteria 1264
208 Ga0496125_0006897 3300048928 Bacteria 12157
209 Ga0496125_0056574 3300048928 Bacteria 3184
210 Ga0496125_0117929 3300048928 Bacteria 1902
211 Ga0496126_0000129 3300048929 Bacteria 174059
212 Ga0496126_0145136 3300048929 Bacteria 2039
213 Ga0495678_056100 3300049459 Bacteria 1500
214 Ga0501032_0002334 3300049569 Bacteria 14884
215 Ga0501033_0148783 3300049570 Bacteria 1690
216 Ga0501034_0000013 3300049571 Bacteria 297898
217 Ga0501034_0004634 3300049571 Bacteria 15229
218 Ga0501037_0000306 3300049573 Bacteria 41605
219 Ga0501037_0044340 3300049573 Bacteria 3266
220 Ga0501038_0038481 3300049574 Bacteria 4188
221 Ga0501039_0000066 3300049575 Bacteria 80201
222 Ga0501041_0186845 3300049577 Bacteria 1298
223 Ga0501043_0015741 3300049579 Bacteria 5930
224 Ga0501046_0016691 3300049580 Bacteria 6142
225 Ga0501047_0423827 3300049581 Bacteria 1162
226 Ga0501067_0025371 3300049583 Bacteria 3285
227 Ga0501070_0061494 3300049586 Bacteria 3111
228 Ga0501073_0010035 3300049589 Bacteria 6962
229 Ga0501075_0117272 3300049591 Bacteria 2024
230 Ga0501080_0000048 3300049742 Bacteria 76890
231 Ga0501083_0255910 3300049744 Unclassified 1139
232 Ga0501035_0000058 3300049822 Bacteria 135089
233 Ga0501044_0000023 3300049823 Bacteria 196555
234 Ga0501044_0032665 3300049823 Bacteria 5470
235 nmdc:mga03n38_4935_c1 3300050490 Bacteria 4479
236 nmdc:mga00v17_68_c1 3300050491 Bacteria 62705
237 nmdc:mga0yw44_14571_c1 3300050492 Bacteria 4179
238 Ga0495601_0054925 3300053077 Bacteria 2521
239 Ga0495619_0108605 3300053085 Bacteria 1894
240 Ga0495619_0121852 3300053085 Bacteria 1788
241 Ga0500578_0135663 3300053086 Bacteria 1540
242 Ga0500651_0079327 3300053093 Bacteria 2035
243 Ga0500641_0078264 3300053096 Bacteria 1400
244 Ga0500607_067857 3300053121 Bacteria 1847
245 Ga0500614_010673 3300053123 Bacteria 1977
246 Ga0500658_0000595 3300053134 Bacteria 15066
247 Ga0500658_0003823 3300053134 Bacteria 5665
248 Ga0500658_0117241 3300053134 Bacteria 1177
249 Ga0500559_0005108 3300053136 Bacteria 6074
250 Ga0500568_0001203 3300053139 Bacteria 17279
251 Ga0500573_0002399 3300053140 Bacteria 9345
252 Ga0500590_000056 3300053148 Bacteria 27364
253 Ga0500590_005757 3300053148 Bacteria 5988
254 Ga0500616_0007133 3300053153 Bacteria 7152
255 Ga0500616_0022811 3300053153 Bacteria 3492
256 Ga0500622_0000102 3300053156 Bacteria 86452
257 Ga0500622_0067076 3300053156 Bacteria 1821
258 Ga0500624_000939 3300053157 Bacteria 6079
259 Ga0500633_0000579 3300053160 Bacteria 6003
260 Ga0500636_0012004 3300053177 Bacteria 5073
261 Ga0500636_0048228 3300053177 Bacteria 2508
262 Ga0501082_0003302 3300060353 Bacteria 14078
263 Ga0530510_0059884 3300061734 Bacteria 2755
264 2585847097 2585427594 Bacteria 6180594
265 2509391251 2509276021 Bacteria 7634384
266 2509445430 2509276033 Bacteria 7180565
267 2511171463 2510917026 Bacteria 7046020
268 2511196460 2510917030 Bacteria 7460662
269 2513577654 2513237085 Bacteria 7695351
270 2513867123 2513237138 Bacteria 7368160
271 2515655646 2515154116 Bacteria 7552979
272 2515740091 2515154134 Bacteria 7220242
273 2517076784 2516653085 Bacteria 7346596
274 2524458579 2524023209 Bacteria 6679728
275 2530649227 2529292951 Bacteria 6916614
276 2585226601 2582581298 Bacteria 7315509
277 2585229359 2582581299 Bacteria 6518058
278 2585259321 2582581304 Bacteria 5831370
279 2585549675 2585427529 Bacteria 7395659
280 2585835842 2585427593 Bacteria 7141551
281 2585994409 2585427633 Bacteria 6413184
282 2585998868 2585427634 Bacteria 6455027
283 2599721749 2599185236 Bacteria 6875203
284 2616553125 2615840698 Bacteria 7319877
285 2617385185 2617270742 Bacteria 6808054
286 2643853987 2643221568 Bacteria 5187270
287 2719389668 2718217927 Bacteria 6972593
288 2721402436 2718218423 Bacteria 6438183
289 2724036270 2721755809 Bacteria 6438790
290 2738805925 2738541293 Bacteria 7065685
291 2766066761 2765235942 Bacteria 7445910
292 2778176661 2775507266 Bacteria 7392367
293 2793297475 2791355256 Bacteria 6798008
294 2793317380 2791355259 Bacteria 7254731
295 2838048094 2838042994 Bacteria 6046894
296 2838068265 2838061910 Bacteria 6794874
297 2838687344 2838686498 Bacteria 7807632
298 2838729683 2838729681 Bacteria 7400765
299 2838743301 2838742623 Bacteria 7396178
300 2841852788 2841851746 Bacteria 7532261
301 2841868623 2841864319 Bacteria 6742987
302 2842114030 2842110456 Bacteria 7656360
303 2842157046 2842156927 Bacteria 6894975
304 2842167703 2842163707 Bacteria 6916235
305 2842181370 2842180545 Bacteria 6888678
306 2842230578 2842229732 Bacteria 7475766
307 2842244479 2842243621 Bacteria 7421798
308 2842257434 2842257432 Bacteria 7401195
309 2842271117 2842271015 Bacteria 7807131
310 2842282622 2842278818 Bacteria 6340002
311 2842300160 2842298080 Bacteria 6123127
312 2842304747 2842304105 Bacteria 7023636
313 2842342572 2842341865 Bacteria 7003929
314 2842359071 2842357229 Bacteria 6485165
315 2842365653 2842363717 Bacteria 6844742
316 2842487449 2842482326 Bacteria 7212537
317 2842511597 2842509118 Bacteria 6850950
318 2844458713 2844454524 Bacteria 7952546
319 2852391828 2852387548 Bacteria 8025568
320 2854898527 2854896431 Bacteria 5869725
321 2857520152 2857516855 Bacteria 7787325
322 2919106106 2919100787 Bacteria 7710546
323 2919172078 2919171160 Bacteria 6499771
324 2933572020 2933570622 Bacteria 7023390
325 2933590126 2933586486 Bacteria 7667493
326 2935905312 2935901341 Bacteria 7341747
327 2936380846 2936375103 Bacteria 6652732
328 3005419827 3005416602 Bacteria 7064308
329 3005423331 3005416602 Bacteria 7064308
330 3005448142 3005445848 Bacteria 6906074
331 643825815 643692032 Bacteria 6891900
332 8005278014 8005275841 Bacteria 6929066
333 8005286209 8005282627 Bacteria 6675747
334 8005312538 8005307578 Bacteria 7395396
335 8005316393 8005314921 Bacteria 7072929
336 8005320849 8005314921 Bacteria 7072929
337 8005379573 8005376324 Bacteria 6590079
338 8005486359 8005484373 Bacteria 6297373
339 8005557330 8005556819 Bacteria 6908598
340 8005567533 8005563573 Bacteria 7153261
341 8018166413 8018163183 Bacteria 7277977
342 8023685009 8023680758 Bacteria 7729763
343 8024483182 8024479707 Bacteria 6954785
344 8024487265 8024486573 Bacteria 6540512
345 8024489191 8024486573 Bacteria 6540512
346 8046767340 8046767195 Bacteria 7547379
347 8057582034 8057575449 Bacteria 7367519
348 JGI25158J39367_1000814
349 JGI25158J39367_1000847
350 JGI25152J39213_1001006
351 JGI25152J39213_1001098
352 JGI25152J39213_1001742
353 JGI25150J39212_1008684
354 JGI25159J45721_1000695
355 JGI25159J45721_1001396
356 JGI25151J46595_10000641
357 JGI25153J46596_10001929
358 JGI25153J46596_10014949
359 rootH2_10248117
360 JGI25160J50197_1000022
361 JGI25161J50226_1000024
362 JGI25161J50226_1000150
363 Ga0055526_1001188
364 Ga0055528_1008255
365 Ga0055528_1011018
366 Ga0055528_1020125
367 Ga0055540_1000077
368 Ga0055540_1002028
369 Ga0055540_1002717
370 Ga0055543_1000074
371 Ga0055543_1000125
372 Ga0065165_1000439
373 Ga0065165_1006601
374 Ga0070670_100134909
375 Ga0070680_100168893
376 Ga0070682_100009085
377 Ga0070660_100073283
378 Ga0070691_10057000
379 Ga0070708_100373755
380 Ga0070663_100011472
381 Ga0070681_10003312
382 Ga0070681_10101056
383 Ga0070706_100360862
384 Ga0070679_100085071
385 Ga0068853_100055339
386 Ga0070695_100234070
387 Ga0070693_100056972
388 Ga0070664_100019682
389 Ga0068859_100141170
390 Ga0068858_100024464
391 Ga0068862_100061653
392 Ga0068862_100098361
393 Ga0075365_10019673
394 Ga0075364_10000332
395 Ga0070712_100511323
396 Ga0097620_100141170
397 Ga0079104_1000105
398 Ga0105240_10928250
399 Ga0105243_10073006
400 Ga0105237_10020199
401 Ga0105249_10247701
402 Ga0105249_10467495
403 Ga0123340_1058881
404 Ga0123341_1000044
405 Ga0123341_1010161
406 Ga0123342_1018344
407 Ga0123342_1032246
408 Ga0157370_10044759
409 Ga0157369_10083885
410 Ga0163162_10528232
411 Ga0157375_10289912
412 Ga0157380_10541931
413 Ga0213874_10003233
414 Ga0224712_10113814
415 Ga0209436_100011
416 Ga0209436_108817
417 Ga0207425_1000415
418 Ga0209129_1000217
419 Ga0209129_1000337
420 Ga0209129_1001051
421 Ga0209129_1002594
422 Ga0209673_1000968
423 Ga0209673_1012496
424 Ga0209673_1012553
425 Ga0209130_1000066
426 Ga0209130_1000251
427 Ga0209676_1005962
428 Ga0209025_1000239
429 Ga0209025_1017360
430 Ga0209564_1000225
431 Ga0209758_1000349
432 Ga0209758_1000978
433 Ga0209758_1001087
434 Ga0209758_1008480
435 Ga0209050_1005571
436 Ga0209050_1009911
437 Ga0209256_1001796
438 Ga0207426_1000008
439 Ga0207426_1000082
440 Ga0209051_1000027
441 Ga0209051_1002785
442 Ga0209051_1004406
443 Ga0209257_1002432
444 Ga0207654_10035692
445 Ga0207671_10205548
446 Ga0207660_10139966
447 Ga0207660_10260453
448 Ga0207657_10046103
449 Ga0207681_10076280
450 Ga0207709_10204708
451 Ga0207689_10114653
452 Ga0207679_10128381
453 Ga0207712_10091901
454 Ga0207678_10000332
455 Ga0207683_10261375
456 Ga0209281_1000303
457 Ga0209371_1007696
458 Ga0268265_10013754
459 Ga0268256_1005081
460 Ga0307516_10000006
461 Ga0307405_10003953
462 Ga0307406_10086482
463 Ga0373955_0112920
464 Ga0395905_0010341
465 Ga0436363_0915980
466 Ga0439465_0000812
467 Ga0439465_0014011
468 Ga0451802_1528202
469 Ga0451837_1035261
470 Ga0451845_0069740
471 Ga0451847_0457945
472 Ga0451851_1054191
473 Ga0451843_0763961
474 Ga0451853_3964379
475 Ga0466966_0143521
476 Ga0466959_0039411
477 Ga0495617_102237
478 Ga0495651_0138060
479 Ga0495650_0046881
480 Ga0495607_0070995
481 Ga0495583_0001176
482 Ga0495583_0091800
483 Ga0495606_0004066
484 Ga0495606_0010822
485 Ga0495606_0132006
486 Ga0495610_0000467
487 Ga0495610_0028978
488 Ga0495610_0055224
489 Ga0495610_0067929
490 Ga0495620_0039584
491 Ga0495632_0004177
492 Ga0495632_0008093
493 Ga0495643_0006525
494 Ga0495643_0017925
495 Ga0495643_0098029
496 Ga0495648_0012686
497 Ga0495654_0000152
498 Ga0495640_0075502
499 Ga0495640_0143211
500 Ga0495587_0087046
501 Ga0495587_0195215
502 Ga0495588_0099554
503 Ga0495649_0140382
504 Ga0495600_0012444
505 Ga0495660_0020717
506 Ga0495604_0040770
507 Ga0495604_0076241
508 Ga0495680_0115933
509 Ga0495687_058148
510 Ga0495684_0201201
511 Ga0495686_0000090
512 Ga0495686_0034565
513 Ga0495686_0054329
514 Ga0495686_0070580
515 Ga0495686_0116064
516 Ga0495626_0030388
517 Ga0495626_0126779
518 Ga0496101_0158876
519 Ga0496101_0297643
520 Ga0496102_0011143
521 Ga0496102_0283250
522 Ga0496104_0030885
523 Ga0496104_0068408
524 Ga0496105_0043553
525 Ga0496106_0001167
526 Ga0496106_0030763
527 Ga0496108_0288056
528 Ga0496110_0173422
529 Ga0496110_0603568
530 Ga0496111_0102975
531 Ga0496113_0042275
532 Ga0496114_0018656
533 Ga0496115_0007865
534 Ga0496116_0000407
535 Ga0496116_0061630
536 Ga0496116_0074762
537 Ga0496117_0012723
538 Ga0496117_0065087
539 Ga0496118_0007812
540 Ga0496118_0049387
541 Ga0496119_0031427
542 Ga0496119_0052563
543 Ga0496121_0019771
544 Ga0496121_0023911
545 Ga0496121_0043647
546 Ga0496121_0094034
547 Ga0496122_0020698
548 Ga0496122_0048185
549 Ga0496122_0119223
550 Ga0496123_0005889
551 Ga0496123_0058820
552 Ga0496124_0000072
553 Ga0496124_0069207
554 Ga0496124_0264256
555 Ga0496125_0006897
556 Ga0496125_0056574
557 Ga0496125_0117929
558 Ga0496126_0000129
559 Ga0496126_0145136
560 Ga0495678_056100
561 Ga0501032_0002334
562 Ga0501033_0148783
563 Ga0501034_0000013
564 Ga0501034_0004634
565 Ga0501037_0000306
566 Ga0501037_0044340
567 Ga0501038_0038481
568 Ga0501039_0000066
569 Ga0501041_0186845
570 Ga0501043_0015741
571 Ga0501046_0016691
572 Ga0501047_0423827
573 Ga0501067_0025371
574 Ga0501070_0061494
575 Ga0501073_0010035
576 Ga0501075_0117272
577 Ga0501080_0000048
578 Ga0501083_0255910
579 Ga0501035_0000058
580 Ga0501044_0000023
581 Ga0501044_0032665
582 nmdc:mga03n38_4935_c1
583 nmdc:mga00v17_68_c1
584 nmdc:mga0yw44_14571_c1
585 Ga0495601_0054925
586 Ga0495619_0108605
587 Ga0495619_0121852
588 Ga0500578_0135663
589 Ga0500651_0079327
590 Ga0500641_0078264
591 Ga0500607_067857
592 Ga0500614_010673
593 Ga0500658_0000595
594 Ga0500658_0003823
595 Ga0500658_0117241
596 Ga0500559_0005108
597 Ga0500568_0001203
598 Ga0500573_0002399
599 Ga0500590_000056
600 Ga0500590_005757
601 Ga0500616_0007133
602 Ga0500616_0022811
603 Ga0500622_0000102
604 Ga0500622_0067076
605 Ga0500624_000939
606 Ga0500633_0000579
607 Ga0500636_0012004
608 Ga0500636_0048228
609 Ga0501082_0003302
610 Ga0530510_0059884
611 2585847097
612 2509391251
613 2509445430
614 2511171463
615 2511196460
616 2513577654
617 2513867123
618 2515655646
619 2515740091
620 2517076784
621 2524458579
622 2530649227
623 2585226601
624 2585229359
625 2585259321
626 2585549675
627 2585835842
628 2585994409
629 2585998868
630 2599721749
631 2616553125
632 2617385185
633 2643853987
634 2719389668
635 2721402436
636 2724036270
637 2738805925
638 2766066761
639 2778176661
640 2793297475
641 2793317380
642 2838048094
643 2838068265
644 2838687344
645 2838729683
646 2838743301
647 2841852788
648 2841868623
649 2842114030
650 2842157046
651 2842167703
652 2842181370
653 2842230578
654 2842244479
655 2842257434
656 2842271117
657 2842282622
658 2842300160
659 2842304747
660 2842342572
661 2842359071
662 2842365653
663 2842487449
664 2842511597
665 2844458713
666 2852391828
667 2854898527
668 2857520152
669 2919106106
670 2919172078
671 2933572020
672 2933590126
673 2935905312
674 2936380846
675 3005419827
676 3005423331
677 3005448142
678 643825815
679 8005278014
680 8005286209
681 8005312538
682 8005316393
683 8005320849
684 8005379573
685 8005486359
686 8005557330
687 8005567533
688 8018166413
689 8023685009
690 8024483182
691 8024487265
692 8024489191
693 8046767340
694 8057582034

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01292

Ni_hydr_CYTB

Prokaryotic cytochrome b561

55

308

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6g94-assembly1.cif.gz_B structure of e. coli hydrogenase-1 c19g variant in complex with cytochrome b 0.632 28 257
6g94-assembly1.cif.gz_A structure of e. coli hydrogenase-1 c19g variant in complex with cytochrome b 0.617 23 259
6g94-assembly1.cif.gz_B structure of e. coli hydrogenase-1 c19g variant in complex with cytochrome b 0.6065 28 257
6g94-assembly1.cif.gz_A structure of e. coli hydrogenase-1 c19g variant in complex with cytochrome b 0.6007 23 259
8he5-assembly1.cif.gz_M rna polymerase ii elongation complex bound with rad26 and elf1, stalled at shl(-3.5) of the nucleosome 0.4768 54 91
ID Description Score Start End Superfamily
af_P0AEL0_1_211_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.7816 19 275 1.20.950.20
af_P77409_60_261_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.7749 18 275 1.20.950.20
af_P77409_60_261_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.7504 18 275 1.20.950.20
af_P0AAM1_1_207_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.6852 1 259 1.20.950.20
af_P0AEL0_1_211_1.20.950.20 Mainly Alpha;Up-down Bundle;Fumarate Reductase Cytochrome B subunit;Transmembrane di-heme cytochromes, Chain C 0.6787 19 275 1.20.950.20
ID Description Score Start End GO Terms
AF-A0A527FSW0-F1-model_v4 deleted 0.9142 183 284
AF-A0A527H6X9-F1-model_v4 Cytochrome b/b6 domain-containing protein 0.9114 65 283 GO:0005886
GO:0009055
GO:0020037
GO:0022904
AF-A0A2V5QH46-F1-model_v4 Oxidoreductase 0.9079 189 273 GO:0005886
GO:0009055
GO:0022904
AF-A0A527FSW0-F1-model_v4 deleted 0.9058 183 284
AF-A0A519KUQ8-F1-model_v4 DUF4405 domain-containing protein 0.9004 13 284 GO:0005506
GO:0005886
GO:0009055
GO:0020037
GO:0022904

Map