F409677

General Info

Members Datasets Scaffolds Average Seq Length
329 204 282 484

Family's Representative Sequence

Representative Sequence 3300015261|Ga0182006_1018832|Ga0182006_10188322
Length 534
Sequence MRAFRASGEADATILVLRRRLRYRSDDRQAPHEDCAMLCARHSDPMPEDTTITVFDAARALAFIGDLSMGQPIDHSLRTAWLAGMISREAGCNAPQVEVARHVALLRWSGCTANAQEFADFLEDDVLGRRALLASPQPRLHQPHRAPIPGPVVAMAHIHCEIAGDIAGMLGLSPDVEAALRAIFEAYDGSGIPGVLRGKDVPLATYVVALASDLEIFSRLYGLDEALALARGRANSLYPEFLVEASSPHAREWMKLLDSPVAPWTGVADQPASMLRRVGLELVGDVSDLKLPWMTGYSRRVAKLARDCGTQLGMNEPLRQRMYKAGLIHGIGRAAVPNAIWNAPEPLPASSMERLRLVPYWTSRAAGQIDGLAAEAEIASFAFERRDGSGYFRGRSGMSMPLEGQIVAAAEQWVSHRTRRPWRPELTEAQSLARMHEDVEAGRFDQEVVTALLACALSGTPAKPAAPAPGDPSLSQRELEVLRCISRGDNTKQVARALSISPSTVRTHVERVFRKLGCSTRAAATLKASAKGLL

Samples

Sample ID Description Type Environment
1 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
2 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
3 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
4 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
5 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
6 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
7 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
8 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
9 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
10 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
11 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
12 2643221658 Variovorax sp. Root411 Isolate Unclassified
13 2643221683 Variovorax sp. Root473 Isolate Unclassified
14 2738541277 Variovorax sp. GV051 Isolate Unclassified
15 2738541307 Variovorax sp. GV008 Isolate Unclassified
16 2738543019 Variovorax sp. GV040 Isolate Unclassified
17 2818991446 Variovorax sp. 1180 Isolate Unclassified
18 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
19 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
20 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
21 2885198086 Variovorax sp. 679 Isolate Unclassified
22 2885211737 Variovorax sp. 553 Isolate Unclassified
23 2899924645 Variovorax sp. 369 Isolate Unclassified
24 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
25 2904456579 Variovorax sp. 2002 Isolate Unclassified
26 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
27 2928037797 Variovorax sp. 1126 Isolate Unclassified
28 2928044640 Variovorax sp. 1128 Isolate Unclassified
29 2928051484 Variovorax sp. 1133 Isolate Unclassified
30 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
31 2928070936 Variovorax gossypii 1167 Isolate Unclassified
32 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
33 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
34 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
35 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
36 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
37 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
38 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
39 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
40 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
41 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
42 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
43 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
44 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
45 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
46 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
47 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
48 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
49 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
50 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
51 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
52 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
53 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
54 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
55 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
56 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
57 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
58 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
59 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
60 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
61 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
62 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
63 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
64 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
65 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
66 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
67 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
68 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
69 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
70 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
71 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
72 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
73 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
74 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
75 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
76 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
77 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
78 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
79 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
80 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
81 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
82 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
83 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
84 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
85 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
86 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
87 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
88 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
89 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
90 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
91 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
94 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
97 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
98 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
101 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
102 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
103 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
104 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
105 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
106 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
107 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
108 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
109 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
110 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
111 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
112 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
113 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
114 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
120 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
123 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
124 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
125 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
126 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
127 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
128 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
129 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
130 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
131 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
132 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
133 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
134 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
135 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
136 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
137 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
138 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
139 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
140 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
141 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
142 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
143 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
144 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
145 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
146 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
147 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
148 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
149 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
150 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
151 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
152 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
153 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
154 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
155 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
156 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
157 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
158 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
159 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
160 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
161 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
162 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
163 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
164 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
165 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
166 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
167 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
168 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
169 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
170 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
171 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
172 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
173 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
174 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
175 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
176 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
177 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
178 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
179 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
180 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
181 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
182 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
183 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
184 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
185 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
186 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
187 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
188 3300053110 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 endosphere Metagenome Endosphere
189 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
190 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
191 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
192 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
193 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
194 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
195 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
196 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
197 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
198 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
199 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
200 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
201 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
202 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
203 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
204 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.71
Metatranscriptomes 0
Isolates 14.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 50.15
Nodule 1.22
Rhizoplane 3.65
Rhizosphere 30.09
Stem 0
Stem Tuber 0
Unclassified 14.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1000532 3300002773 Bacteria 21030
2 JGI25152J39213_1004557 3300002773 Bacteria 4326
3 JGI25152J39213_1014715 3300002773 Bacteria 1574
4 JGI25150J39212_1000489 3300002774 Bacteria 16689
5 JGI25159J45721_1000405 3300002987 Bacteria 20050
6 JGI25151J46595_10000323 3300003187 Bacteria 51894
7 JGI25151J46595_10000958 3300003187 Bacteria 22047
8 JGI25151J46595_10001020 3300003187 Bacteria 21030
9 JGI25151J46595_10001187 3300003187 Bacteria 18756
10 JGI25151J46595_10001241 3300003187 Bacteria 18165
11 JGI25153J46596_10000667 3300003215 Bacteria 21030
12 JGI25153J46596_10000835 3300003215 Bacteria 18816
13 JGI25153J46596_10005763 3300003215 Bacteria 6453
14 rootH1_10006701 3300003316 Bacteria 17835
15 rootL2_10000915 3300003322 Bacteria 16944
16 rootL2_10002151 3300003322 Bacteria 70803
17 rootH1_10002339 3300003323 Bacteria 35435
18 rootH1_10044523 3300003323 Bacteria 2057
19 rootH1_10061564 3300003323 Bacteria 10695
20 JGI25160J50197_1000610 3300003354 Bacteria 20050
21 JGI25160J50197_1021876 3300003354 Bacteria 1887
22 Ga0055538_1000059 3300003751 Bacteria 112508
23 Ga0055539_1000089 3300003752 Bacteria 112508
24 Ga0055533_1000098 3300003756 Bacteria 112508
25 Ga0055525_1000130 3300003759 Bacteria 112508
26 Ga0055535_1000624 3300003761 Bacteria 28617
27 Ga0055542_1000029 3300003762 Bacteria 248836
28 Ga0055526_1001065 3300003771 Bacteria 20050
29 Ga0055526_1002006 3300003771 Bacteria 14023
30 Ga0055537_1000558 3300003773 Bacteria 21027
31 Ga0055537_1011191 3300003773 Bacteria 1838
32 Ga0055524_1000061 3300003775 Bacteria 135241
33 Ga0055524_1000181 3300003775 Bacteria 71026
34 Ga0055524_1000847 3300003775 Bacteria 20050
35 Ga0055524_1002704 3300003775 Bacteria 8960
36 Ga0055536_1002239 3300003781 Bacteria 11008
37 Ga0055536_1005499 3300003781 Bacteria 6177
38 Ga0055534_1000524 3300003784 Bacteria 20674
39 Ga0055534_1009089 3300003784 Bacteria 2189
40 Ga0055528_1000834 3300003790 Bacteria 21027
41 Ga0055528_1024066 3300003790 Bacteria 1838
42 Ga0055530_10002276 3300003791 Bacteria 12614
43 Ga0055530_10002372 3300003791 Bacteria 12207
44 Ga0055540_1000026 3300003792 Bacteria 189071
45 Ga0055540_1000754 3300003792 Bacteria 21953
46 Ga0055540_1002207 3300003792 Bacteria 10575
47 Ga0055531_10000001 3300003794 Bacteria 543586
48 Ga0055531_10000887 3300003794 Bacteria 24452
49 Ga0055531_10001106 3300003794 Bacteria 20968
50 Ga0055531_10002488 3300003794 Bacteria 12289
51 Ga0055531_10004646 3300003794 Bacteria 8247
52 Ga0055531_10004901 3300003794 Bacteria 7965
53 Ga0055541_1000061 3300003841 Bacteria 112508
54 Ga0055543_1000420 3300004625 Bacteria 26756
55 Ga0065165_1001375 3300005262 Bacteria 26747
56 Ga0065165_1002501 3300005262 Bacteria 15376
57 Ga0070682_100033523 3300005337 Bacteria 3121
58 Ga0070671_100008902 3300005355 Bacteria 8053
59 Ga0070667_100002352 3300005367 Bacteria 16562
60 Ga0070662_100006713 3300005457 Bacteria 7437
61 Ga0068853_100045506 3300005539 Bacteria 3758
62 Ga0068859_100016257 3300005617 Bacteria 7474
63 Ga0068863_100018807 3300005841 Bacteria 6611
64 Ga0068858_100012190 3300005842 Bacteria 8105
65 Ga0068860_100004425 3300005843 Bacteria 14344
66 Ga0068862_100059278 3300005844 Bacteria 3287
67 Ga0075362_10000441 3300006177 Bacteria 12035
68 Ga0075370_10001707 3300006353 Bacteria 9755
69 Ga0075370_10002051 3300006353 Bacteria 9156
70 Ga0097620_100016259 3300006931 Bacteria 7474
71 Ga0099823_1000046 3300006944 Bacteria 60074
72 Ga0079104_1000093 3300006946 Bacteria 130633
73 Ga0105247_10007501 3300009101 Bacteria 6685
74 Ga0105243_10002397 3300009148 Bacteria 15714
75 Ga0105243_10005893 3300009148 Bacteria 9490
76 Ga0105248_10170233 3300009177 Bacteria 2455
77 Ga0105246_10121654 3300011119 Bacteria 1935
78 Ga0157371_10000001 3300013102 Bacteria 1162285
79 Ga0157370_10001005 3300013104 Bacteria 35589
80 Ga0157370_10002380 3300013104 Bacteria 22682
81 Ga0163163_10001797 3300014325 Bacteria 18072
82 Ga0157379_10020057 3300014968 Bacteria 5908
83 Ga0182006_1018832 3300015261 Bacteria 2912
84 Ga0163161_10000079 3300017792 Bacteria 97522
85 Ga0163161_10001834 3300017792 Bacteria 15516
86 Ga0163161_10009535 3300017792 Bacteria 6714
87 Ga0213872_10020818 3300021361 Bacteria 3021
88 Ga0209436_101337 3300025208 Bacteria 8718
89 Ga0209436_109232 3300025208 Bacteria 1897
90 Ga0209784_100018 3300025224 Bacteria 456816
91 Ga0209566_100016 3300025225 Bacteria 456824
92 Ga0209674_100030 3300025226 Bacteria 456824
93 Ga0209672_100557 3300025228 Bacteria 19969
94 Ga0209563_100034 3300025230 Bacteria 456824
95 Ga0209258_100018 3300025242 Bacteria 567561
96 Ga0207425_1000282 3300025245 Bacteria 37515
97 Ga0207425_1005613 3300025245 Bacteria 3547
98 Ga0209677_100019 3300025253 Bacteria 456824
99 Ga0209148_1000030 3300025254 Bacteria 567582
100 Ga0209129_1000041 3300025258 Bacteria 307590
101 Ga0209129_1000436 3300025258 Bacteria 31077
102 Ga0209129_1003151 3300025258 Bacteria 7388
103 Ga0209565_1000165 3300025263 Bacteria 86871
104 Ga0209565_1001400 3300025263 Bacteria 10736
105 Ga0209565_1001938 3300025263 Bacteria 8133
106 Ga0209673_1000216 3300025273 Bacteria 114232
107 Ga0209673_1001101 3300025273 Bacteria 30262
108 Ga0209673_1003479 3300025273 Bacteria 9248
109 Ga0209673_1015974 3300025273 Bacteria 2827
110 Ga0209130_1000427 3300025284 Bacteria 45224
111 Ga0209130_1000646 3300025284 Bacteria 32516
112 Ga0209130_1002654 3300025284 Bacteria 8558
113 Ga0209675_1000321 3300025291 Bacteria 43024
114 Ga0209675_1005589 3300025291 Bacteria 5225
115 Ga0209675_1017206 3300025291 Bacteria 2071
116 Ga0209676_1000004 3300025292 Bacteria 1138360
117 Ga0209676_1001150 3300025292 Bacteria 28948
118 Ga0209676_1002480 3300025292 Bacteria 12997
119 Ga0209025_1000029 3300025294 Bacteria 488571
120 Ga0209025_1000208 3300025294 Bacteria 140415
121 Ga0209025_1000230 3300025294 Bacteria 131131
122 Ga0209025_1000244 3300025294 Bacteria 127938
123 Ga0209025_1001318 3300025294 Bacteria 33769
124 Ga0209025_1011162 3300025294 Bacteria 5973
125 Ga0209025_1013308 3300025294 Bacteria 5184
126 Ga0209564_1000029 3300025295 Bacteria 505995
127 Ga0209564_1000070 3300025295 Bacteria 303126
128 Ga0209564_1000352 3300025295 Bacteria 85941
129 Ga0209758_1000043 3300025297 Bacteria 402310
130 Ga0209758_1000057 3300025297 Bacteria 333111
131 Ga0209758_1000297 3300025297 Bacteria 97664
132 Ga0209758_1024233 3300025297 Bacteria 2711
133 Ga0209050_1000002 3300025298 Bacteria 1792849
134 Ga0209050_1000228 3300025298 Bacteria 123537
135 Ga0209050_1000270 3300025298 Bacteria 110916
136 Ga0209050_1001361 3300025298 Bacteria 26758
137 Ga0209050_1002585 3300025298 Bacteria 15027
138 Ga0209050_1004325 3300025298 Bacteria 9689
139 Ga0209050_1008363 3300025298 Bacteria 5548
140 Ga0209256_1000030 3300025299 Bacteria 414828
141 Ga0209256_1000047 3300025299 Bacteria 314709
142 Ga0209256_1000075 3300025299 Bacteria 236149
143 Ga0209256_1000238 3300025299 Bacteria 97664
144 Ga0209256_1000614 3300025299 Bacteria 49314
145 Ga0207426_1000194 3300025302 Bacteria 150009
146 Ga0207426_1000294 3300025302 Bacteria 98700
147 Ga0209051_1000002 3300025303 Bacteria 1631846
148 Ga0209051_1000004 3300025303 Bacteria 1155596
149 Ga0209051_1000128 3300025303 Bacteria 142159
150 Ga0209051_1000869 3300025303 Bacteria 30576
151 Ga0209051_1002371 3300025303 Bacteria 13618
152 Ga0209051_1003219 3300025303 Bacteria 10897
153 Ga0209051_1019531 3300025303 Bacteria 2952
154 Ga0209257_1000002 3300025304 Bacteria 1767052
155 Ga0209257_1000033 3300025304 Bacteria 671006
156 Ga0209257_1000162 3300025304 Bacteria 175776
157 Ga0209257_1000423 3300025304 Bacteria 81354
158 Ga0209257_1001472 3300025304 Bacteria 27715
159 Ga0209257_1003015 3300025304 Bacteria 15235
160 Ga0209257_1007164 3300025304 Bacteria 6854
161 Ga0207710_10000471 3300025900 Bacteria 25737
162 Ga0207706_10001032 3300025933 Bacteria 28316
163 Ga0207709_10000587 3300025935 Bacteria 30442
164 Ga0207709_10012331 3300025935 Bacteria 4710
165 Ga0207703_10014361 3300026035 Bacteria 6177
166 Ga0207639_10050300 3300026041 Bacteria 3165
167 Ga0209281_1000084 3300027111 Bacteria 254215
168 Ga0268265_10053295 3300028380 Bacteria 3064
169 Ga0268264_10010370 3300028381 Bacteria 7705
170 Ga0307517_10002271 3300028786 Bacteria 30996
171 Ga0307515_10008063 3300028794 Bacteria 20644
172 Ga0307513_10047112 3300031456 Bacteria 4692
173 Ga0307513_10060042 3300031456 Bacteria 4033
174 Ga0307513_10137156 3300031456 Bacteria 2380
175 Ga0307408_100001479 3300031548 Bacteria 17438
176 Ga0307508_10008944 3300031616 Bacteria 9225
177 Ga0307514_10094196 3300031649 Bacteria 2172
178 Ga0307405_10007381 3300031731 Bacteria 5492
179 Ga0307405_10036652 3300031731 Bacteria 2940
180 Ga0307406_10005909 3300031901 Bacteria 6714
181 Ga0307412_10005228 3300031911 Bacteria 7277
182 Ga0307412_10029732 3300031911 Bacteria 3431
183 Ga0307416_100029768 3300032002 Bacteria 4085
184 Ga0307416_100063775 3300032002 Bacteria 3019
185 Ga0373931_0002028 3300035691 Bacteria 8917
186 Ga0395905_0013052 3300037471 Bacteria 7980
187 Ga0495617_000876 3300046452 Bacteria 14182
188 Ga0495627_036183 3300046453 Bacteria 1535
189 Ga0495590_0000019 3300046457 Bacteria 213272
190 Ga0495638_0000115 3300046460 Bacteria 129129
191 Ga0495653_0075503 3300046463 Bacteria 2508
192 Ga0495650_0000921 3300046471 Bacteria 34549
193 Ga0495585_0060876 3300046492 Bacteria 2077
194 Ga0495607_0000009 3300046501 Bacteria 216674
195 Ga0495583_0000126 3300046506 Bacteria 128985
196 Ga0495606_0000583 3300046507 Bacteria 57929
197 Ga0495606_0083801 3300046507 Bacteria 1976
198 Ga0495610_0047831 3300046512 Bacteria 2102
199 Ga0495616_0001600 3300046513 Bacteria 15514
200 Ga0495620_0006001 3300046515 Bacteria 6723
201 Ga0495631_0000007 3300046518 Bacteria 130158
202 Ga0495632_0008997 3300046519 Bacteria 6060
203 Ga0495637_0001529 3300046520 Bacteria 13534
204 Ga0495637_0021817 3300046520 Bacteria 2930
205 Ga0495643_0000130 3300046522 Bacteria 121749
206 Ga0495643_0079089 3300046522 Bacteria 1715
207 Ga0495648_0000004 3300046524 Bacteria 373639
208 Ga0495654_0004606 3300046530 Bacteria 8142
209 Ga0495597_0000143 3300046542 Bacteria 63995
210 Ga0495622_0000142 3300046557 Bacteria 61706
211 Ga0495633_0000146 3300046558 Bacteria 94353
212 Ga0495668_0000808 3300046616 Bacteria 35909
213 Ga0495625_0000369 3300046660 Bacteria 68884
214 Ga0495625_0003291 3300046660 Bacteria 16304
215 Ga0495625_0016904 3300046660 Bacteria 5726
216 Ga0495670_0020612 3300046691 Bacteria 3251
217 Ga0495671_0003272 3300046692 Bacteria 10047
218 Ga0495589_0000033 3300046794 Bacteria 162794
219 Ga0495660_0006121 3300046810 Bacteria 7143
220 Ga0495676_0000324 3300047321 Bacteria 38811
221 Ga0495687_000017 3300047443 Bacteria 350429
222 Ga0495687_004283 3300047443 Bacteria 9742
223 Ga0495687_004307 3300047443 Bacteria 9694
224 Ga0495677_0017343 3300047445 Bacteria 2611
225 Ga0495686_0052047 3300047472 Bacteria 2568
226 Ga0495593_0000712 3300047673 Bacteria 19228
227 Ga0496101_0002437 3300048904 Bacteria 11435
228 Ga0496101_0043215 3300048904 Bacteria 3220
229 Ga0496102_0024705 3300048905 Bacteria 5344
230 Ga0496102_0060062 3300048905 Bacteria 3478
231 Ga0496112_0290439 3300048915 Bacteria 1581
232 Ga0496114_0004364 3300048917 Bacteria 10953
233 Ga0496117_0019997 3300048920 Bacteria 5476
234 Ga0496117_0062551 3300048920 Bacteria 2550
235 Ga0496117_0101990 3300048920 Bacteria 1812
236 Ga0496118_0015690 3300048921 Bacteria 6995
237 Ga0496121_0099819 3300048924 Bacteria 2242
238 Ga0496122_0043001 3300048925 Bacteria 3545
239 Ga0496123_0005675 3300048926 Bacteria 12456
240 Ga0496123_0040447 3300048926 Bacteria 3246
241 Ga0496124_0013232 3300048927 Bacteria 8069
242 Ga0496125_0086406 3300048928 Bacteria 2372
243 Ga0496125_0100118 3300048928 Bacteria 2137
244 Ga0495678_012116 3300049459 Bacteria 4096
245 Ga0495678_015143 3300049459 Bacteria 3559
246 nmdc:mga03683_424_c1 3300050489 Bacteria 12206
247 nmdc:mga0k408_5694_c1 3300050493 Bacteria 6626
248 nmdc:mga07m45_2553_c1 3300050496 Bacteria 8557
249 nmdc:mga07m45_4478_c1 3300050496 Bacteria 6834
250 nmdc:mga07m45_53010_c1 3300050496 Bacteria 2292
251 nmdc:mga0sz30_51447_c1 3300050516 Bacteria 1747
252 Ga0500610_0002208 3300053079 Bacteria 7040
253 Ga0500610_0003654 3300053079 Bacteria 5956
254 Ga0500578_0000122 3300053086 Bacteria 94493
255 Ga0500643_007781 3300053087 Bacteria 4276
256 Ga0500651_0000044 3300053093 Bacteria 86444
257 Ga0500566_0029625 3300053094 Bacteria 3197
258 Ga0500571_000243 3300053110 Bacteria 20532
259 Ga0500592_002075 3300053116 Bacteria 3230
260 Ga0500593_000446 3300053117 Bacteria 16309
261 Ga0500593_000874 3300053117 Bacteria 11186
262 Ga0500593_012708 3300053117 Bacteria 3577
263 Ga0500607_000680 3300053121 Bacteria 32855
264 Ga0500607_005281 3300053121 Bacteria 8480
265 Ga0500607_009343 3300053121 Bacteria 5904
266 Ga0500607_010026 3300053121 Bacteria 5672
267 Ga0500642_0036039 3300053130 Bacteria 2105
268 Ga0500652_001169 3300053131 Bacteria 8383
269 Ga0500655_000060 3300053133 Bacteria 30372
270 Ga0500658_0000028 3300053134 Bacteria 105688
271 Ga0500658_0000094 3300053134 Bacteria 40740
272 Ga0500559_0001732 3300053136 Bacteria 11960
273 Ga0500559_0042354 3300053136 Bacteria 1986
274 Ga0500564_004778 3300053138 Bacteria 5467
275 Ga0500568_0016430 3300053139 Bacteria 3291
276 Ga0500616_0018090 3300053153 Bacteria 3987
277 Ga0500619_000218 3300053154 Bacteria 13100
278 Ga0500622_0001331 3300053156 Bacteria 20020
279 Ga0500622_0031834 3300053156 Bacteria 2767
280 Ga0500627_0005947 3300053158 Bacteria 4102
281 Ga0500638_003556 3300053162 Bacteria 5792
282 Ga0500636_0006895 3300053177 Bacteria 6546

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047443 Ga0495687_004283 Ga0495687_004283_2887_4305 422
2 3300047443 Ga0495687_004307 Ga0495687_004307_5390_6808 422
3 3300046810 Ga0495660_0006121 Ga0495660_0006121_754_2169 433
4 3300046457 Ga0495590_0000019 Ga0495590_0000019_66885_68300 435
5 3300046616 Ga0495668_0000808 Ga0495668_0000808_18585_20000 435
6 3300049459 Ga0495678_012116 Ga0495678_012116_959_2374 435
7 3300048915 Ga0496112_0290439 Ga0496112_0290439_26_1354 442
8 3300048927 Ga0496124_0013232 Ga0496124_0013232_4689_6173 442
9 3300013102 Ga0157371_10000001 Ga0157371_10000001481 443
10 3300003794 Ga0055531_10002488 Ga0055531_100024883 444
11 3300046460 Ga0495638_0000115 Ga0495638_0000115_71478_72893 444
12 3300046471 Ga0495650_0000921 Ga0495650_0000921_19963_21378 444
13 3300046506 Ga0495583_0000126 Ga0495583_0000126_71479_72894 444
14 3300046524 Ga0495648_0000004 Ga0495648_0000004_10766_12181 444
15 3300046557 Ga0495622_0000142 Ga0495622_0000142_4233_5648 444
16 3300046558 Ga0495633_0000146 Ga0495633_0000146_29734_31149 444
17 3300046660 Ga0495625_0000369 Ga0495625_0000369_56085_57500 444
18 3300047445 Ga0495677_0017343 Ga0495677_0017343_604_2019 444
19 3300049459 Ga0495678_015143 Ga0495678_015143_422_1837 444
20 3300003323 rootH1_10002339 rootH1_100023399 446
21 3300003323 rootH1_10044523 rootH1_100445232 446
22 3300006944 Ga0099823_1000046 Ga0099823_100004624 446
23 3300025273 Ga0209673_1003479 Ga0209673_10034796 446
24 3300025298 Ga0209050_1001361 Ga0209050_10013617 446
25 3300025299 Ga0209256_1000614 Ga0209256_10006143 446
26 3300025303 Ga0209051_1000869 Ga0209051_10008698 446
27 3300025304 Ga0209257_1003015 Ga0209257_10030155 446
28 3300021361 Ga0213872_10020818 Ga0213872_100208181 450
29 3300048904 Ga0496101_0002437 Ga0496101_0002437_4515_6026 450
30 iso_pu_bacteria 2738541307 2738878833 451
31 iso_pu_bacteria 2599185214 2599624782 452
32 iso_pu_bacteria 2599185226 2599672794 452
33 iso_pu_bacteria 2599185227 2599682756 452
34 iso_pu_bacteria 2599185229 2599694403 452
35 3300025291 Ga0209675_1005589 Ga0209675_10055892 454
36 3300025294 Ga0209025_1013308 Ga0209025_10133087 454
37 3300003794 Ga0055531_10001106 Ga0055531_1000110615 455
38 3300025304 Ga0209257_1000162 Ga0209257_1000162120 455
39 3300046512 Ga0495610_0047831 Ga0495610_0047831_674_2074 456
40 3300048905 Ga0496102_0024705 Ga0496102_0024705_1892_3355 457
41 3300053136 Ga0500559_0001732 Ga0500559_0001732_2338_3807 457
42 3300046522 Ga0495643_0000130 Ga0495643_0000130_19707_21122 459
43 3300046542 Ga0495597_0000143 Ga0495597_0000143_5703_7118 459
44 3300005337 Ga0070682_100033523 Ga0070682_1000335233 461
45 3300046522 Ga0495643_0079089 Ga0495643_0079089_73_1473 462
46 3300006353 Ga0075370_10001707 Ga0075370_100017074 463
47 3300048925 Ga0496122_0043001 Ga0496122_0043001_843_2312 463
48 3300050493 nmdc:mga0k408_5694_c1 nmdc:mga0k408_5694_c1_3730_5184 463
49 3300050496 nmdc:mga07m45_53010_c1 nmdc:mga07m45_53010_c1_722_2176 463
50 3300046520 Ga0495637_0021817 Ga0495637_0021817_757_2205 467
51 3300050496 nmdc:mga07m45_4478_c1 nmdc:mga07m45_4478_c1_5389_6795 467
52 3300053079 Ga0500610_0002208 Ga0500610_0002208_3871_5319 467
53 3300046515 Ga0495620_0006001 Ga0495620_0006001_101_1618 468
54 3300046660 Ga0495625_0003291 Ga0495625_0003291_5730_7202 468
55 3300046692 Ga0495671_0003272 Ga0495671_0003272_1285_2802 468
56 3300053079 Ga0500610_0003654 Ga0500610_0003654_2721_4235 468
57 3300053117 Ga0500593_012708 Ga0500593_012708_1390_2841 468
58 3300053121 Ga0500607_000680 Ga0500607_000680_4267_5781 468
59 iso_pu_bacteria 2585428057 2587726402 468
60 3300003187 JGI25151J46595_10001241 JGI25151J46595_1000124119 469
61 3300003775 Ga0055524_1000061 Ga0055524_100006143 469
62 3300025294 Ga0209025_1000029 Ga0209025_1000029372 469
63 3300025298 Ga0209050_1008363 Ga0209050_10083633 469
64 3300025299 Ga0209256_1000030 Ga0209256_100003043 469
65 3300028794 Ga0307515_10008063 Ga0307515_1000806312 469
66 3300046507 Ga0495606_0000583 Ga0495606_0000583_17081_18520 469
67 3300047472 Ga0495686_0052047 Ga0495686_0052047_1037_2500 469
68 3300048917 Ga0496114_0004364 Ga0496114_0004364_1805_3241 469
69 iso_pu_bacteria 2643221592 2643970809 470
70 iso_pu_bacteria 2643221625 2644138918 470
71 iso_pu_bacteria 2643221648 2644273851 470
72 iso_pu_bacteria 2585428058 2587731797 471
73 3300046492 Ga0495585_0060876 Ga0495585_0060876_313_1740 472
74 3300046794 Ga0495589_0000033 Ga0495589_0000033_101164_102591 472
75 3300047443 Ga0495687_000017 Ga0495687_000017_276150_277577 472
76 iso_pu_bacteria 2857576091 2857578105 472
77 3300003323 rootH1_10061564 rootH1_100615647 473
78 3300003794 Ga0055531_10000001 Ga0055531_10000001300 473
79 3300025298 Ga0209050_1002585 Ga0209050_10025855 473
80 3300025303 Ga0209051_1003219 Ga0209051_10032198 473
81 3300025304 Ga0209257_1000033 Ga0209257_1000033388 473
82 3300002773 JGI25152J39213_1014715 JGI25152J39213_10147151 474
83 3300003215 JGI25153J46596_10000835 JGI25153J46596_100008356 474
84 3300003215 JGI25153J46596_10005763 JGI25153J46596_100057635 474
85 3300003791 Ga0055530_10002372 Ga0055530_100023726 474
86 3300003792 Ga0055540_1000026 Ga0055540_10000268 474
87 3300003794 Ga0055531_10004646 Ga0055531_100046463 474
88 3300006946 Ga0079104_1000093 Ga0079104_100009392 474
89 3300025258 Ga0209129_1000041 Ga0209129_100004172 474
90 3300025273 Ga0209673_1015974 Ga0209673_10159742 474
91 3300025295 Ga0209564_1000029 Ga0209564_1000029218 474
92 3300025297 Ga0209758_1000043 Ga0209758_1000043222 474
93 3300025297 Ga0209758_1000057 Ga0209758_100005735 474
94 3300025298 Ga0209050_1000228 Ga0209050_100022871 474
95 3300025303 Ga0209051_1000004 Ga0209051_1000004487 474
96 3300025304 Ga0209257_1000423 Ga0209257_100042344 474
97 3300027111 Ga0209281_1000084 Ga0209281_1000084200 474
98 3300046519 Ga0495632_0008997 Ga0495632_0008997_48_1493 474
99 iso_pu_bacteria 2588253510 2588292315 474
100 iso_pu_bacteria 2738541277 2738718874 474
101 iso_pu_bacteria 2738543019 2739280892 474
102 3300003322 rootL2_10002151 rootL2_1000215140 475
103 3300003751 Ga0055538_1000059 Ga0055538_100005967 475
104 3300003752 Ga0055539_1000089 Ga0055539_100008967 475
105 3300003756 Ga0055533_1000098 Ga0055533_100009867 475
106 3300003759 Ga0055525_1000130 Ga0055525_100013067 475
107 3300003775 Ga0055524_1000181 Ga0055524_100018142 475
108 3300003841 Ga0055541_1000061 Ga0055541_100006167 475
109 3300005262 Ga0065165_1002501 Ga0065165_10025013 475
110 3300025224 Ga0209784_100018 Ga0209784_100018267 475
111 3300025225 Ga0209566_100016 Ga0209566_100016267 475
112 3300025226 Ga0209674_100030 Ga0209674_100030267 475
113 3300025230 Ga0209563_100034 Ga0209563_100034267 475
114 3300025253 Ga0209677_100019 Ga0209677_100019267 475
115 3300025299 Ga0209256_1000075 Ga0209256_1000075143 475
116 3300053086 Ga0500578_0000122 Ga0500578_0000122_76646_78151 475
117 3300053117 Ga0500593_000446 Ga0500593_000446_7062_8501 475
118 3300053130 Ga0500642_0036039 Ga0500642_0036039_284_1732 475
119 3300053131 Ga0500652_001169 Ga0500652_001169_6704_8152 475
120 3300053156 Ga0500622_0001331 Ga0500622_0001331_12023_13471 475
121 iso_pu_bacteria 2585428062 2587755393 475
122 iso_pu_bacteria 2885198086 2885203493 475
123 iso_pu_bacteria 2885211737 2885217157 475
124 iso_pu_bacteria 2904541872 2904544205 475
125 iso_pu_bacteria 2928070936 2928074823 475
126 iso_pu_bacteria 2929160207 2929162223 475
127 3300005457 Ga0070662_100006713 Ga0070662_1000067132 476
128 3300025933 Ga0207706_10001032 Ga0207706_1000103218 476
129 3300046452 Ga0495617_000876 Ga0495617_000876_7097_8536 476
130 3300046501 Ga0495607_0000009 Ga0495607_0000009_176709_178151 476
131 3300046520 Ga0495637_0001529 Ga0495637_0001529_1104_2543 476
132 3300003316 rootH1_10006701 rootH1_100067015 477
133 3300003322 rootL2_10000915 rootL2_100009157 477
134 3300046463 Ga0495653_0075503 Ga0495653_0075503_123_1577 477
135 3300048920 Ga0496117_0019997 Ga0496117_0019997_148_1593 477
136 3300048926 Ga0496123_0040447 Ga0496123_0040447_430_1875 477
137 3300053121 Ga0500607_010026 Ga0500607_010026_4189_5634 477
138 3300053154 Ga0500619_000218 Ga0500619_000218_11444_12898 477
139 3300003187 JGI25151J46595_10000323 JGI25151J46595_1000032346 478
140 3300003187 JGI25151J46595_10001187 JGI25151J46595_100011876 478
141 3300006353 Ga0075370_10002051 Ga0075370_100020517 478
142 3300013104 Ga0157370_10001005 Ga0157370_1000100518 478
143 3300017792 Ga0163161_10001834 Ga0163161_100018343 478
144 3300025294 Ga0209025_1000208 Ga0209025_100020846 478
145 3300031911 Ga0307412_10005228 Ga0307412_100052282 478
146 3300032002 Ga0307416_100063775 Ga0307416_1000637752 478
147 3300050496 nmdc:mga07m45_2553_c1 nmdc:mga07m45_2553_c1_685_2133 478
148 iso_pu_bacteria 2945909444 2945914467 478
149 3300025294 Ga0209025_1000244 Ga0209025_1000244112 479
150 3300050516 nmdc:mga0sz30_51447_c1 nmdc:mga0sz30_51447_c1_112_1563 479
151 3300053136 Ga0500559_0042354 Ga0500559_0042354_328_1797 479
152 3300037471 Ga0395905_0013052 Ga0395905_0013052_3578_5035 480
153 3300053121 Ga0500607_009343 Ga0500607_009343_1524_3041 481
154 3300017792 Ga0163161_10009535 Ga0163161_100095353 482
155 3300031911 Ga0307412_10029732 Ga0307412_100297322 482
156 3300013104 Ga0157370_10002380 Ga0157370_1000238012 483
157 3300011119 Ga0105246_10121654 Ga0105246_101216542 484
158 3300017792 Ga0163161_10000079 Ga0163161_1000007974 485
159 iso_pu_bacteria 2643221683 2644464260 485
160 iso_pu_bacteria 2904449895 2904453872 485
161 iso_pu_bacteria 2904456579 2904462348 485
162 iso_pu_bacteria 2954767861 2954771814 485
163 iso_pu_bacteria 2643221658 2644329518 486
164 iso_pu_bacteria 2738541307 2738881233 486
165 iso_pu_bacteria 2904541872 2904542785 486
166 iso_pu_bacteria 2928084124 2928090615 486
167 iso_pu_bacteria 2929160207 2929168034 486
168 iso_pu_bacteria 2945909444 2945911210 486
169 iso_pu_bacteria 2945984333 2945986502 486
170 iso_pu_bacteria 2599185214 2599625245 487
171 iso_pu_bacteria 2599185226 2599673303 487
172 iso_pu_bacteria 2599185227 2599682973 487
173 iso_pu_bacteria 2599185229 2599694911 487
174 iso_pu_bacteria 2818991446 2819600827 487
175 iso_pu_bacteria 2831265667 2831267424 487
176 iso_pu_bacteria 2838054893 2838060382 487
177 iso_pu_bacteria 2885198086 2885198289 487
178 iso_pu_bacteria 2885211737 2885212331 487
179 iso_pu_bacteria 2899924645 2899931617 487
180 iso_pu_bacteria 2928037797 2928042997 487
181 iso_pu_bacteria 2928044640 2928050344 487
182 iso_pu_bacteria 2928051484 2928056629 487
183 iso_pu_bacteria 2928064002 2928068913 487
184 iso_pu_bacteria 2928070936 2928077741 487
185 3300003781 Ga0055536_1002239 Ga0055536_10022394 489
186 3300003792 Ga0055540_1000754 Ga0055540_10007544 489
187 3300005844 Ga0068862_100059278 Ga0068862_1000592782 489
188 3300006177 Ga0075362_10000441 Ga0075362_100004415 489
189 3300009148 Ga0105243_10002397 Ga0105243_100023979 489
190 3300015261 Ga0182006_1018832 Ga0182006_10188322 489
191 3300025292 Ga0209676_1001150 Ga0209676_100115022 489
192 3300025303 Ga0209051_1000128 Ga0209051_100012815 489
193 3300025303 Ga0209051_1002371 Ga0209051_10023716 489
194 3300025304 Ga0209257_1007164 Ga0209257_10071645 489
195 3300025935 Ga0207709_10000587 Ga0207709_1000058718 489
196 3300028380 Ga0268265_10053295 Ga0268265_100532952 489
197 3300031548 Ga0307408_100001479 Ga0307408_1000014795 489
198 3300031731 Ga0307405_10007381 Ga0307405_100073812 489
199 3300031731 Ga0307405_10036652 Ga0307405_100366522 489
200 3300031901 Ga0307406_10005909 Ga0307406_100059095 489
201 3300032002 Ga0307416_100029768 Ga0307416_1000297683 489
202 3300050489 nmdc:mga03683_424_c1 nmdc:mga03683_424_c1_7753_9222 489
203 3300003187 JGI25151J46595_10000958 JGI25151J46595_1000095813 490
204 3300005355 Ga0070671_100008902 Ga0070671_1000089023 490
205 3300005367 Ga0070667_100002352 Ga0070667_1000023523 490
206 3300005617 Ga0068859_100016257 Ga0068859_1000162576 490
207 3300005841 Ga0068863_100018807 Ga0068863_1000188075 490
208 3300005842 Ga0068858_100012190 Ga0068858_1000121903 490
209 3300005843 Ga0068860_100004425 Ga0068860_1000044256 490
210 3300006931 Ga0097620_100016259 Ga0097620_1000162596 490
211 3300009101 Ga0105247_10007501 Ga0105247_100075015 490
212 3300009148 Ga0105243_10005893 Ga0105243_100058938 490
213 3300009177 Ga0105248_10170233 Ga0105248_101702332 490
214 3300014325 Ga0163163_10001797 Ga0163163_1000179717 490
215 3300014968 Ga0157379_10020057 Ga0157379_100200574 490
216 3300025258 Ga0209129_1003151 Ga0209129_10031514 490
217 3300025294 Ga0209025_1000230 Ga0209025_100023044 490
218 3300025298 Ga0209050_1004325 Ga0209050_10043256 490
219 3300025900 Ga0207710_10000471 Ga0207710_1000047118 490
220 3300025935 Ga0207709_10012331 Ga0207709_100123314 490
221 3300026035 Ga0207703_10014361 Ga0207703_100143613 490
222 3300028381 Ga0268264_10010370 Ga0268264_100103705 490
223 3300028786 Ga0307517_10002271 Ga0307517_1000227111 490
224 3300031456 Ga0307513_10047112 Ga0307513_100471123 490
225 3300031456 Ga0307513_10060042 Ga0307513_100600423 490
226 3300031456 Ga0307513_10137156 Ga0307513_101371562 490
227 3300031616 Ga0307508_10008944 Ga0307508_1000894410 490
228 3300031649 Ga0307514_10094196 Ga0307514_100941961 490
229 3300035691 Ga0373931_0002028 Ga0373931_0002028_2110_3582 490
230 3300046453 Ga0495627_036183 Ga0495627_036183_30_1514 490
231 3300046507 Ga0495606_0083801 Ga0495606_0083801_456_1940 490
232 3300046513 Ga0495616_0001600 Ga0495616_0001600_554_2068 490
233 3300046518 Ga0495631_0000007 Ga0495631_0000007_99383_100864 490
234 3300046530 Ga0495654_0004606 Ga0495654_0004606_2246_3760 490
235 3300046660 Ga0495625_0016904 Ga0495625_0016904_918_2390 490
236 3300046691 Ga0495670_0020612 Ga0495670_0020612_1238_2713 490
237 3300047321 Ga0495676_0000324 Ga0495676_0000324_23161_24675 490
238 3300047673 Ga0495593_0000712 Ga0495593_0000712_17388_18902 490
239 3300048904 Ga0496101_0043215 Ga0496101_0043215_193_1686 490
240 3300048905 Ga0496102_0060062 Ga0496102_0060062_1133_2605 490
241 3300048920 Ga0496117_0062551 Ga0496117_0062551_937_2409 490
242 3300048924 Ga0496121_0099819 Ga0496121_0099819_311_1783 490
243 3300048926 Ga0496123_0005675 Ga0496123_0005675_10208_11692 490
244 3300048928 Ga0496125_0086406 Ga0496125_0086406_130_1602 490
245 3300053087 Ga0500643_007781 Ga0500643_007781_2294_3808 490
246 3300053093 Ga0500651_0000044 Ga0500651_0000044_45271_46785 490
247 3300053094 Ga0500566_0029625 Ga0500566_0029625_901_2415 490
248 3300053110 Ga0500571_000243 Ga0500571_000243_1939_3453 490
249 3300053116 Ga0500592_002075 Ga0500592_002075_64_1578 490
250 3300053117 Ga0500593_000874 Ga0500593_000874_7407_8888 490
251 3300053133 Ga0500655_000060 Ga0500655_000060_5787_7301 490
252 3300053134 Ga0500658_0000028 Ga0500658_0000028_31208_32722 490
253 3300053134 Ga0500658_0000094 Ga0500658_0000094_20363_21877 490
254 3300053138 Ga0500564_004778 Ga0500564_004778_849_2363 490
255 3300053139 Ga0500568_0016430 Ga0500568_0016430_311_1825 490
256 3300053153 Ga0500616_0018090 Ga0500616_0018090_2327_3841 490
257 3300053158 Ga0500627_0005947 Ga0500627_0005947_1936_3411 490
258 3300053162 Ga0500638_003556 Ga0500638_003556_4249_5763 490
259 3300053177 Ga0500636_0006895 Ga0500636_0006895_4324_5838 490
260 3300002773 JGI25152J39213_1000532 JGI25152J39213_10005323 491
261 3300002773 JGI25152J39213_1004557 JGI25152J39213_10045572 491
262 3300002774 JGI25150J39212_1000489 JGI25150J39212_10004893 491
263 3300002987 JGI25159J45721_1000405 JGI25159J45721_10004052 491
264 3300003187 JGI25151J46595_10001020 JGI25151J46595_100010203 491
265 3300003215 JGI25153J46596_10000667 JGI25153J46596_100006673 491
266 3300003354 JGI25160J50197_1000610 JGI25160J50197_10006102 491
267 3300003354 JGI25160J50197_1021876 JGI25160J50197_10218762 491
268 3300003761 Ga0055535_1000624 Ga0055535_100062421 491
269 3300003762 Ga0055542_1000029 Ga0055542_1000029208 491
270 3300003771 Ga0055526_1001065 Ga0055526_100106521 491
271 3300003771 Ga0055526_1002006 Ga0055526_10020062 491
272 3300003773 Ga0055537_1000558 Ga0055537_10005583 491
273 3300003773 Ga0055537_1011191 Ga0055537_10111911 491
274 3300003775 Ga0055524_1000847 Ga0055524_10008472 491
275 3300003775 Ga0055524_1002704 Ga0055524_10027042 491
276 3300003781 Ga0055536_1005499 Ga0055536_10054991 491
277 3300003784 Ga0055534_1000524 Ga0055534_10005243 491
278 3300003784 Ga0055534_1009089 Ga0055534_10090892 491
279 3300003790 Ga0055528_1000834 Ga0055528_10008343 491
280 3300003790 Ga0055528_1024066 Ga0055528_10240661 491
281 3300003791 Ga0055530_10002276 Ga0055530_1000227610 491
282 3300003792 Ga0055540_1002207 Ga0055540_10022074 491
283 3300003794 Ga0055531_10000887 Ga0055531_1000088724 491
284 3300003794 Ga0055531_10004901 Ga0055531_100049019 491
285 3300004625 Ga0055543_1000420 Ga0055543_100042026 491
286 3300005262 Ga0065165_1001375 Ga0065165_10013753 491
287 3300005539 Ga0068853_100045506 Ga0068853_1000455064 491
288 3300025208 Ga0209436_101337 Ga0209436_10133710 491
289 3300025208 Ga0209436_109232 Ga0209436_1092322 491
290 3300025228 Ga0209672_100557 Ga0209672_10055716 491
291 3300025242 Ga0209258_100018 Ga0209258_100018384 491
292 3300025245 Ga0207425_1000282 Ga0207425_10002826 491
293 3300025245 Ga0207425_1005613 Ga0207425_10056132 491
294 3300025254 Ga0209148_1000030 Ga0209148_1000030384 491
295 3300025258 Ga0209129_1000436 Ga0209129_10004364 491
296 3300025263 Ga0209565_1000165 Ga0209565_10001656 491
297 3300025263 Ga0209565_1001400 Ga0209565_10014003 491
298 3300025263 Ga0209565_1001938 Ga0209565_10019389 491
299 3300025273 Ga0209673_1000216 Ga0209673_100021677 491
300 3300025273 Ga0209673_1001101 Ga0209673_100110126 491
301 3300025284 Ga0209130_1000427 Ga0209130_100042741 491
302 3300025284 Ga0209130_1000646 Ga0209130_10006467 491
303 3300025284 Ga0209130_1002654 Ga0209130_10026542 491
304 3300025291 Ga0209675_1000321 Ga0209675_10003216 491
305 3300025291 Ga0209675_1017206 Ga0209675_10172062 491
306 3300025292 Ga0209676_1000004 Ga0209676_1000004697 491
307 3300025292 Ga0209676_1002480 Ga0209676_100248017 491
308 3300025294 Ga0209025_1001318 Ga0209025_10013186 491
309 3300025294 Ga0209025_1011162 Ga0209025_10111621 491
310 3300025295 Ga0209564_1000070 Ga0209564_1000070130 491
311 3300025295 Ga0209564_1000352 Ga0209564_10003526 491
312 3300025297 Ga0209758_1000297 Ga0209758_10002976 491
313 3300025297 Ga0209758_1024233 Ga0209758_10242332 491
314 3300025298 Ga0209050_1000002 Ga0209050_10000021207 491
315 3300025298 Ga0209050_1000270 Ga0209050_100027028 491
316 3300025299 Ga0209256_1000047 Ga0209256_1000047142 491
317 3300025299 Ga0209256_1000238 Ga0209256_10002386 491
318 3300025302 Ga0207426_1000194 Ga0207426_1000194135 491
319 3300025302 Ga0207426_1000294 Ga0207426_10002946 491
320 3300025303 Ga0209051_1000002 Ga0209051_1000002976 491
321 3300025303 Ga0209051_1019531 Ga0209051_10195313 491
322 3300025304 Ga0209257_1000002 Ga0209257_10000021117 491
323 3300025304 Ga0209257_1001472 Ga0209257_100147226 491
324 3300026041 Ga0207639_10050300 Ga0207639_100503003 491
325 3300048920 Ga0496117_0101990 Ga0496117_0101990_20_1495 491
326 3300048921 Ga0496118_0015690 Ga0496118_0015690_695_2170 491
327 3300048928 Ga0496125_0100118 Ga0496125_0100118_20_1495 491
328 3300053121 Ga0500607_005281 Ga0500607_005281_6284_7789 491
329 3300053156 Ga0500622_0031834 Ga0500622_0031834_585_2072 491

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

472

528

0.96

PF13487

HD_5

HD domain

281

448

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3clo-assembly1.cif.gz_B crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9619 432 491
3clo-assembly2.cif.gz_C-2 crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9556 432 491
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.95 432 486
1zn2-assembly1.cif.gz_A low resolution structure of response regulator styr 0.949 430 487
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9411 430 490
ID Description Score Start End Superfamily
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9682 432 486 1.10.10.10
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9668 432 487 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9635 430 487 1.10.10.10
3sztA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9546 432 491 1.10.10.10
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9501 428 491 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7C6TD58-F1-model_v4 HD domain-containing protein 0.9415 259 413 GO:0016787
AF-A0A2U3D9P0-F1-model_v4 HD-GYP domain-containing protein 0.9388 254 410
AF-A0A660RCE0-F1-model_v4 Uncharacterized protein 0.9371 237 413 GO:0004112
GO:0009214
AF-A0A357B6U1-F1-model_v4 PAS domain S-box protein 0.9353 237 413 GO:0006355
GO:0016020
AF-A0A7Y8HU27-F1-model_v4 PAS domain S-box protein 0.9333 238 413 GO:0006355

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pLDDT pTM Quality
89.6 0.91 High
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Predicted Structure (AlphaFold2)

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