F406697

General Info

Members Datasets Scaffolds Average Seq Length
322 248 644 675

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2839986021|2839986554
Length 732
Sequence TDRPTAPADGPVPHRWLRRPGPHARPGDPARPDEHAPSGLSYGADYNPDQWPREVWDEDVRLMREAGVTVVSLAIFSWARIQPTEDTWDFAWLDEVMDLLHENGITVDLATATASPPPWLTTKHPEILPRTRTGETLWPGARQQWRPTSPVFREHALRLVERMAERYGDHPALVAWHVSNELGCHNVYDFSDDAAAAFRTWLRERYATLDALNAAWGTAFWSQRYSDWDQILPPRLAASHPNPTQQLDFKRFSSDALQQYLRAEAAILRRATPDVPVTTNFMVMGETKGMDYAAWADELDFVSNDHYVLPGPQALDELSFSANLTGGIARHRPWFLMEHSTSAVNWQPVNVAKKPGELARDSLTHVAHGADAVCYFQWRQSAAGAEKYHSGMVPHAGEHSRLFRDVVALGATLRDLAPVAGSDQAPARAAIAFDWDSWWTSELDSHPTDRLRYRQEALDWYSAFLALGVRADVVPVAADLTGYDVVVAPVLHVVPAALRDRLTAFVEGGGHLVTTYFSGVVDQDDHAWLGGYPGALRDLLGIRVEEFAPLLDHESATVEVDGEQLEATLWTEPLDVVDPAVEVVGWYKTGEHAGRAAITRRPVTTGAGTGSAAYVSTRLGREGLVPVLARLLDDAGVRSELPAAARGLVELAVRTNGTEDFWFLVNRTAQPVEVPDVAGDVLVGRRLTPSGAADSTDGTDGAHDTAVGALLLDARGVAVVRRPAATAGTVTR

Samples

Sample ID Description Type Environment
1 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
25 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
31 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
33 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
34 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
36 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
54 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
55 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
56 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
57 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
58 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
59 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
60 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
61 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
62 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
63 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
64 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
65 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
70 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
71 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
72 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
73 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
74 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
75 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
76 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
77 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
78 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
79 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
80 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
81 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
82 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
83 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
84 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
85 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
86 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
87 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
88 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
89 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
90 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
91 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
92 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
93 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
94 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
95 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
96 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
97 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
98 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
99 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
100 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
101 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
102 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
103 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
104 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
105 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
106 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
107 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
108 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
109 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
110 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
111 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
112 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
113 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
114 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
115 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
116 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
117 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
118 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
119 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
120 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
121 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
122 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
123 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
124 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
125 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
126 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
127 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
128 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
129 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
130 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
131 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
132 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
133 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
134 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
135 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
136 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
137 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
138 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
139 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
148 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
149 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
150 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
151 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
152 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
153 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
154 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
155 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
156 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
157 2554235283 Bacillus safensis VK Isolate Rhizosphere
158 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
159 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
160 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
161 2643221548 Streptomyces sp. Root55 Isolate Unclassified
162 2643221566 Microbacterium sp. Root166 Isolate Unclassified
163 2643221572 Leifsonia sp. Root60 Isolate Unclassified
164 2643221597 Microbacterium sp. Root180 Isolate Unclassified
165 2643221613 Oerskovia sp. Root22 Isolate Unclassified
166 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
167 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
168 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
169 2643221714 Streptomyces sp. Root264 Isolate Unclassified
170 2643221721 Oerskovia sp. Root918 Isolate Unclassified
171 2643221735 Bacillus sp. Root920 Isolate Unclassified
172 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
173 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
174 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
175 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
176 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
177 2773857759 Microbacterium sp. 1294 Isolate Unclassified
178 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
179 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
180 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
181 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
182 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
183 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
184 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
185 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
186 2808606448 Streptomyces sp. 193411 Isolate Unclassified
187 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
188 2811994870 Bacillus sp. JB4 Isolate Unclassified
189 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
190 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
191 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
192 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
193 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
194 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
195 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
196 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
197 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
198 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
199 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
200 2862574272 Streptomyces sp. AcE210 Isolate Nodule
201 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
202 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
203 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
204 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
205 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
206 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
207 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
208 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
209 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
210 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
211 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
212 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
213 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
214 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
215 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
216 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
217 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
218 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
219 2919726948 Bacillus pumilus 4489 Isolate Unclassified
220 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
221 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
222 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
223 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
224 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
225 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
226 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
227 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
228 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
229 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
230 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
231 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
232 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
233 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
234 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
235 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
236 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
237 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
238 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
239 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
240 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
241 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
242 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
243 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
244 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
245 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
246 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
247 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
248 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 66.77
Metatranscriptomes 1.24
Isolates 31.99

Biome Distribution

Category Percentage (%)
Aerial Root 0.31
Bulb 0
Endosphere 2.48
Nodule 1.24
Rhizoplane 1.24
Rhizosphere 63.35
Stem 0
Stem Tuber 0
Unclassified 0.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000054 3300003187 Bacteria 154819
2 rootL2_10013399 3300003322 Bacteria 5924
3 rootH1_10000929 3300003323 Bacteria 10759
4 Ga0006562J51391_1000416 3300003578 Bacteria 22830
5 Ga0006562J51391_1068752 3300003578 Bacteria 2910
6 Ga0070658_10055886 3300005327 Bacteria 3207
7 Ga0070666_10071165 3300005335 Bacteria 2367
8 Ga0070660_100018282 3300005339 Bacteria 5120
9 Ga0070668_100000291 3300005347 Bacteria 32997
10 Ga0070668_100102844 3300005347 Bacteria 2266
11 Ga0070659_100001281 3300005366 Bacteria 18221
12 Ga0070659_100071073 3300005366 Bacteria 2766
13 Ga0070714_100026011 3300005435 Bacteria 4834
14 Ga0070672_100002080 3300005543 Bacteria 12608
15 Ga0070665_100057157 3300005548 Bacteria 3912
16 Ga0068855_100017723 3300005563 Bacteria 8562
17 Ga0068855_100042366 3300005563 Bacteria 5393
18 Ga0068857_100036507 3300005577 Bacteria 4354
19 Ga0068852_100092152 3300005616 Bacteria 2713
20 Ga0068851_10000027 3300005834 Bacteria 118586
21 Ga0068858_100000648 3300005842 Bacteria 36262
22 Ga0068858_100134359 3300005842 Bacteria 2320
23 Ga0068860_100020130 3300005843 Bacteria 6465
24 Ga0081539_10000448 3300005985 Bacteria 87723
25 Ga0081539_10003600 3300005985 Bacteria 18743
26 Ga0075365_10002492 3300006038 Bacteria 9056
27 Ga0075367_10001986 3300006178 Bacteria 9109
28 Ga0079104_1008061 3300006946 Bacteria 3736
29 Ga0105245_10020191 3300009098 Bacteria 5839
30 Ga0105241_10001415 3300009174 Bacteria 18390
31 Ga0105248_10000365 3300009177 Bacteria 52722
32 Ga0105237_10022857 3300009545 Bacteria 6413
33 Ga0105239_10109736 3300010375 Bacteria 3058
34 Ga0157369_10027672 3300013105 Bacteria 6282
35 Ga0163163_10016852 3300014325 Bacteria 6802
36 Ga0163163_10131174 3300014325 Bacteria 2546
37 Ga0183367_1012 3300015688 Bacteria 347438
38 Ga0206353_11206199 3300020082 Bacteria 21902
39 Ga0213873_10005143 3300021358 Unclassified 2491
40 Ga0213874_10002861 3300021377 Unclassified 3763
41 Ga0209677_100513 3300025253 Bacteria 21624
42 Ga0209025_1000011 3300025294 Bacteria 976387
43 Ga0207656_10000001 3300025321 Bacteria 1323684
44 Ga0207654_10000001 3300025911 Bacteria 1816198
45 Ga0207695_10007931 3300025913 Bacteria 13399
46 Ga0207671_10000001 3300025914 Bacteria 1318881
47 Ga0207694_10004588 3300025924 Bacteria 10764
48 Ga0207690_10000984 3300025932 Bacteria 18249
49 Ga0207706_10024667 3300025933 Bacteria 5389
50 Ga0207691_10015244 3300025940 Bacteria 7312
51 Ga0207711_10000340 3300025941 Bacteria 49514
52 Ga0207711_10018604 3300025941 Bacteria 5776
53 Ga0207679_10016223 3300025945 Bacteria 4942
54 Ga0207667_10033499 3300025949 Bacteria 5522
55 Ga0207668_10000882 3300025972 Bacteria 18103
56 Ga0207668_10026661 3300025972 Bacteria 3755
57 Ga0207677_10005251 3300026023 Bacteria 7014
58 Ga0207703_10000238 3300026035 Bacteria 62524
59 Ga0207703_10010084 3300026035 Bacteria 7405
60 Ga0207703_10035586 3300026035 Bacteria 3957
61 Ga0207639_10015325 3300026041 Bacteria 5406
62 Ga0207641_10032633 3300026088 Bacteria 4324
63 Ga0207641_10086675 3300026088 Bacteria 2731
64 Ga0207698_10012672 3300026142 Bacteria 5529
65 Ga0209281_1000349 3300027111 Bacteria 76419
66 Ga0209281_1000359 3300027111 Bacteria 74897
67 Ga0307517_10017528 3300028786 Bacteria 9333
68 Ga0307515_10000050 3300028794 Bacteria 275624
69 Ga0307515_10000167 3300028794 Bacteria 160820
70 Ga0307515_10004403 3300028794 Bacteria 29167
71 Ga0307515_10015451 3300028794 Bacteria 14064
72 Ga0307515_10031262 3300028794 Bacteria 8887
73 Ga0307515_10040555 3300028794 Bacteria 7356
74 Ga0307515_10043067 3300028794 Bacteria 7033
75 Ga0307515_10101514 3300028794 Bacteria 3471
76 Ga0307511_10001085 3300030521 Bacteria 28916
77 Ga0307512_10004340 3300030522 Bacteria 15637
78 Ga0307512_10023420 3300030522 Bacteria 5516
79 Ga0307509_10004639 3300031507 Bacteria 19643
80 Ga0307509_10014675 3300031507 Bacteria 9191
81 Ga0307509_10068265 3300031507 Bacteria 3721
82 Ga0307408_100001071 3300031548 Bacteria 20986
83 Ga0307508_10006502 3300031616 Bacteria 10991
84 Ga0307508_10014746 3300031616 Bacteria 7127
85 Ga0307508_10019404 3300031616 Bacteria 6180
86 Ga0307514_10004770 3300031649 Bacteria 12373
87 Ga0307516_10000177 3300031730 Bacteria 82023
88 Ga0307516_10003964 3300031730 Bacteria 18588
89 Ga0307516_10016011 3300031730 Bacteria 7860
90 Ga0307516_10025884 3300031730 Bacteria 5966
91 Ga0307516_10027221 3300031730 Bacteria 5798
92 Ga0307405_10009449 3300031731 Bacteria 5001
93 Ga0307518_10057775 3300031838 Bacteria 2818
94 Ga0307406_10000115 3300031901 Bacteria 46616
95 Ga0307412_10000980 3300031911 Bacteria 16314
96 Ga0307409_100038863 3300031995 Bacteria 3525
97 Ga0307416_100032721 3300032002 Bacteria 3934
98 Ga0307507_10000016 3300033179 Bacteria 225984
99 Ga0307507_10014084 3300033179 Bacteria 9591
100 Ga0307507_10017997 3300033179 Bacteria 8073
101 Ga0307507_10047782 3300033179 Bacteria 4174
102 Ga0307510_10003616 3300033180 Bacteria 18051
103 Ga0307510_10025869 3300033180 Bacteria 6761
104 Ga0373951_0000016 3300035091 Bacteria 66469
105 Ga0373956_0000167 3300035119 Bacteria 24627
106 Ga0373942_0000695 3300035207 Bacteria 9354
107 Ga0373935_0010597 3300035692 Bacteria 5532
108 Ga0373927_0000124 3300035695 Bacteria 58788
109 Ga0373933_0002609 3300035724 Bacteria 10099
110 Ga0395899_0000833 3300037312 Bacteria 29778
111 Ga0395899_0000858 3300037312 Bacteria 29037
112 Ga0395898_0002189 3300037466 Bacteria 23874
113 Ga0436363_0862917 3300039450 Bacteria 21835
114 Ga0436362_0484737 3300039453 Unclassified 2737
115 Ga0451793_0436155 3300041452 Bacteria 10012
116 Ga0439449_0001846 3300042007 Bacteria 8336
117 Ga0439449_0002861 3300042007 Bacteria 6711
118 Ga0466969_0002800 3300044656 Bacteria 9313
119 Ga0466969_0037873 3300044656 Bacteria 2430
120 Ga0466969_0041740 3300044656 Bacteria 2294
121 Ga0466969_0045988 3300044656 Bacteria 2165
122 Ga0466966_0000603 3300044684 Bacteria 22756
123 Ga0466966_0009825 3300044684 Bacteria 6341
124 Ga0466961_0053437 3300044693 Bacteria 2577
125 Ga0466964_0027016 3300044706 Bacteria 2250
126 Ga0466971_0013355 3300044719 Bacteria 3606
127 Ga0466968_0000004 3300044735 Bacteria 83927
128 Ga0466970_0004834 3300044765 Bacteria 6647
129 Ga0466970_0008003 3300044765 Bacteria 5309
130 Ga0466970_0009292 3300044765 Bacteria 4965
131 Ga0466960_0001602 3300044901 Bacteria 8282
132 Ga0466959_0001924 3300045049 Bacteria 13062
133 Ga0466959_0016870 3300045049 Bacteria 5344
134 Ga0466958_0009839 3300045836 Bacteria 5336
135 Ga0466967_0010281 3300045976 Bacteria 7006
136 Ga0495617_003323 3300046452 Bacteria 6083
137 Ga0495592_0019662 3300046454 Bacteria 5137
138 Ga0495603_0002711 3300046455 Bacteria 10439
139 Ga0495603_0009204 3300046455 Bacteria 5968
140 Ga0495629_0000729 3300046459 Bacteria 26703
141 Ga0495629_0061104 3300046459 Bacteria 2632
142 Ga0495651_0004875 3300046462 Bacteria 10262
143 Ga0495662_0000151 3300046476 Bacteria 27248
144 Ga0495664_0002212 3300046477 Bacteria 10409
145 Ga0495594_0031523 3300046499 Bacteria 2874
146 Ga0495606_0005826 3300046507 Bacteria 11623
147 Ga0495610_0027115 3300046512 Bacteria 3051
148 Ga0495616_0003623 3300046513 Bacteria 9870
149 Ga0495620_0002537 3300046515 Bacteria 10567
150 Ga0495620_0006964 3300046515 Bacteria 6170
151 Ga0495643_0001461 3300046522 Bacteria 21642
152 Ga0495652_0009656 3300046529 Bacteria 8759
153 Ga0495652_0149431 3300046529 Bacteria 1827
154 Ga0495654_0017978 3300046530 Bacteria 3709
155 Ga0495640_0045557 3300046533 Bacteria 3043
156 Ga0495587_0001854 3300046536 Bacteria 14065
157 Ga0495668_0004244 3300046616 Bacteria 10297
158 Ga0495668_0006602 3300046616 Bacteria 7568
159 Ga0495634_0002718 3300046642 Bacteria 14551
160 Ga0495625_0000716 3300046660 Bacteria 46718
161 Ga0495635_0000606 3300046663 Bacteria 23102
162 Ga0495635_0036371 3300046663 Bacteria 3413
163 Ga0495657_0000364 3300046675 Bacteria 41806
164 Ga0495646_0020611 3300046680 Bacteria 4171
165 Ga0495613_0009156 3300046689 Bacteria 7341
166 Ga0495649_0046617 3300046694 Bacteria 2360
167 Ga0495589_0012176 3300046794 Bacteria 4460
168 Ga0495660_0014791 3300046810 Bacteria 4513
169 Ga0495581_0001849 3300047315 Bacteria 11845
170 Ga0495604_0001704 3300047317 Bacteria 18070
171 Ga0495604_0029339 3300047317 Bacteria 4375
172 Ga0495676_0000768 3300047321 Bacteria 26771
173 Ga0495676_0005303 3300047321 Bacteria 11804
174 Ga0495676_0029534 3300047321 Bacteria 4666
175 Ga0495687_001025 3300047443 Bacteria 27840
176 Ga0495687_002596 3300047443 Bacteria 14219
177 Ga0495685_002815 3300047447 Bacteria 5486
178 Ga0495685_010204 3300047447 Bacteria 3148
179 Ga0495685_012683 3300047447 Bacteria 2855
180 Ga0495685_014457 3300047447 Bacteria 2682
181 Ga0495593_0006148 3300047673 Bacteria 7063
182 Ga0495602_0015682 3300048088 Bacteria 7639
183 Ga0495614_0016439 3300048089 Bacteria 3219
184 Ga0495626_0000069 3300048091 Bacteria 139104
185 Ga0495626_0040652 3300048091 Bacteria 2195
186 Ga0496103_0031614 3300048906 Bacteria 3226
187 Ga0496108_0000104 3300048911 Bacteria 87781
188 Ga0496117_0000196 3300048920 Bacteria 119243
189 Ga0496117_0010609 3300048920 Bacteria 8360
190 Ga0496119_0000453 3300048922 Bacteria 56116
191 Ga0496120_0000516 3300048923 Bacteria 59973
192 Ga0496122_0024878 3300048925 Bacteria 5226
193 Ga0496124_0000242 3300048927 Bacteria 105814
194 Ga0496126_0000056 3300048929 Bacteria 286295
195 Ga0496126_0000569 3300048929 Bacteria 70647
196 Ga0496126_0010895 3300048929 Bacteria 9472
197 Ga0496126_0028292 3300048929 Bacteria 5343
198 Ga0496126_0064266 3300048929 Bacteria 3288
199 Ga0501316_000349 3300049532 Bacteria 3045
200 Ga0501031_0007808 3300049568 Bacteria 6964
201 Ga0501036_0029842 3300049572 Bacteria 4608
202 Ga0501036_0034839 3300049572 Bacteria 4259
203 Ga0501039_0023583 3300049575 Bacteria 4722
204 Ga0501043_0010147 3300049579 Bacteria 7384
205 Ga0501047_0048970 3300049581 Bacteria 4080
206 Ga0501047_0079272 3300049581 Bacteria 3158
207 Ga0501048_0002983 3300049582 Bacteria 12918
208 Ga0501035_0001325 3300049822 Bacteria 25540
209 Ga0501035_0005876 3300049822 Bacteria 11560
210 Ga0501035_0040242 3300049822 Bacteria 4225
211 Ga0501044_0029095 3300049823 Bacteria 5827
212 Ga0501044_0029411 3300049823 Bacteria 5793
213 Ga0501044_0045366 3300049823 Bacteria 4554
214 Ga0495601_0068977 3300053077 Bacteria 2255
215 Ga0495612_0000998 3300053078 Bacteria 11638
216 Ga0495619_0002746 3300053085 Bacteria 11492
217 Ga0500583_0021484 3300053092 Bacteria 2685
218 Ga0500651_0043638 3300053093 Bacteria 2824
219 Ga0500620_001073 3300053155 Bacteria 4831
220 2839986554 2839986021 Bacteria 3685650
221 2547405542 2547132111 Bacteria 8013147
222 2550900269 2548877040 Bacteria 7507281
223 2555229298 2554235227 Bacteria 3637389
224 2555468846 2554235283 Bacteria 3683090
225 2585319510 2582581314 Bacteria 11452267
226 2585320324 2582581314 Bacteria 11452267
227 2601640007 2600255286 Bacteria 5390125
228 2616702902 2616644814 Bacteria 11555299
229 2643760512 2643221548 Bacteria 8053412
230 2643846972 2643221566 Bacteria 3460379
231 2643877485 2643221572 Bacteria 3614809
232 2643996966 2643221597 Bacteria 3347721
233 2644081428 2643221613 Bacteria 4622396
234 2644384540 2643221669 Bacteria 3611286
235 2644443510 2643221678 Bacteria 9540101
236 2644459595 2643221682 Bacteria 6743283
237 2644627174 2643221714 Bacteria 9015452
238 2644664562 2643221721 Bacteria 4486924
239 2644738368 2643221735 Bacteria 3676263
240 2655034410 2654587600 Bacteria 3911798
241 2686998982 2684623153 Bacteria 3878815
242 2687500288 2687453109 Bacteria 3860091
243 2728530173 2728368933 Bacteria 7044283
244 2753268080 2751185782 Bacteria 11227053
245 2753271190 2751185782 Bacteria 11227053
246 2774382865 2773857759 Bacteria 2963774
247 2774394123 2773857762 Bacteria 5971770
248 2774394821 2773857762 Bacteria 5971770
249 2784585884 2784132148 Bacteria 8627943
250 2808629069 2808606306 Bacteria 3608896
251 2808846017 2808606359 Bacteria 9866990
252 2808849722 2808606360 Bacteria 4404006
253 2808884938 2808606368 Bacteria 3174172
254 2809194325 2808606439 Bacteria 5952208
255 2809195028 2808606439 Bacteria 5952208
256 2809225618 2808606447 Bacteria 3572005
257 2809229379 2808606448 Bacteria 8656184
258 2810364367 2808606700 Bacteria 3482157
259 2812314178 2811994870 Bacteria 3776934
260 2812349078 2811994878 Bacteria 5992952
261 2812349915 2811994878 Bacteria 5992952
262 2812483189 2811994917 Bacteria 7761064
263 2819699971 2818991463 Bacteria 7948711
264 2819723184 2818991468 Bacteria 3723169
265 2821271172 2821268502 Bacteria 3750023
266 2823530225 2823526263 Bacteria 3765752
267 2832009590 2832004796 Bacteria 6538017
268 2852635534 2852632344 Bacteria 3463163
269 2857722565 2857720070 Bacteria 3189373
270 2857730913 2857729791 Bacteria 4040535
271 2862281729 2862281513 Bacteria 9621493
272 2862581908 2862574272 Bacteria 10567477
273 2862709293 2862705112 Bacteria 6563286
274 2866071385 2866065130 Bacteria 6518152
275 2868091362 2868088558 Bacteria 7609351
276 2870724246 2870721527 Bacteria 9689237
277 2881639821 2881636855 Bacteria 5205297
278 2887482796 2887478801 Bacteria 8972725
279 2891399325 2891395885 Bacteria 9251614
280 2891557352 2891554331 Bacteria 8812224
281 2891972479 2891968417 Bacteria 5821697
282 2891973166 2891968417 Bacteria 5821697
283 2895662320 2895660088 Bacteria 3782833
284 2904433750 2904430863 Bacteria 3486923
285 2906802520 2906799679 Bacteria 4031749
286 2907204495 2907202186 Bacteria 6632024
287 2908667451 2908665501 Bacteria 3678115
288 2919094537 2919093281 Bacteria 3660974
289 2919394535 2919391150 Bacteria 4884741
290 2919446759 2919443155 Bacteria 4072969
291 2919474607 2919468124 Bacteria 9133025
292 2919727085 2919726948 Bacteria 3696050
293 2928122519 2928121344 Bacteria 3972376
294 2932434390 2932431166 Bacteria 4215299
295 2935894073 2935890801 Bacteria 4593001
296 2938652970 2938649242 Bacteria 7118381
297 2945956601 2945956166 Bacteria 5110334
298 2946005513 2946003308 Bacteria 3857229
299 2946006654 2946003308 Bacteria 3857229
300 2946079696 2946072368 Bacteria 8999607
301 2954008699 2954002825 Bacteria 9173742
302 2954776361 2954773129 Bacteria 3741715
303 2966604986 2966598605 Bacteria 7676064
304 2968558889 2968558590 Bacteria 6956864
305 2971404064 2971403814 Bacteria 7370929
306 2971513288 2971511577 Bacteria 5404012
307 2977253053 2977251589 Bacteria 2952848
308 2980178398 2980176882 Bacteria 5397533
309 2984583562 2984580707 Bacteria 3351387
310 2988227072 2988225383 Bacteria 7221625
311 2996633040 2996632988 Bacteria 6921523
312 3006494003 3006493962 Bacteria 8825450
313 8001787474 8001781756 Bacteria 9586736
314 8002322845 8002317523 Bacteria 8051857
315 8007374452 8007371054 Bacteria 4849201
316 8008486731 8008485437 Bacteria 7198341
317 8016256519 8016254467 Bacteria 3797036
318 8023627789 8023623736 Bacteria 8593882
319 8025525979 8025524527 Bacteria 7197316
320 8046353198 8046352972 Bacteria 3613806
321 8046998969 8046991243 Bacteria 8497463
322 8054466255 8054465665 Bacteria 7323556
323 JGI25151J46595_10000054
324 rootL2_10013399
325 rootH1_10000929
326 Ga0006562J51391_1000416
327 Ga0006562J51391_1068752
328 Ga0070658_10055886
329 Ga0070666_10071165
330 Ga0070660_100018282
331 Ga0070668_100000291
332 Ga0070668_100102844
333 Ga0070659_100001281
334 Ga0070659_100071073
335 Ga0070714_100026011
336 Ga0070672_100002080
337 Ga0070665_100057157
338 Ga0068855_100017723
339 Ga0068855_100042366
340 Ga0068857_100036507
341 Ga0068852_100092152
342 Ga0068851_10000027
343 Ga0068858_100000648
344 Ga0068858_100134359
345 Ga0068860_100020130
346 Ga0081539_10000448
347 Ga0081539_10003600
348 Ga0075365_10002492
349 Ga0075367_10001986
350 Ga0079104_1008061
351 Ga0105245_10020191
352 Ga0105241_10001415
353 Ga0105248_10000365
354 Ga0105237_10022857
355 Ga0105239_10109736
356 Ga0157369_10027672
357 Ga0163163_10016852
358 Ga0163163_10131174
359 Ga0183367_1012
360 Ga0206353_11206199
361 Ga0213873_10005143
362 Ga0213874_10002861
363 Ga0209677_100513
364 Ga0209025_1000011
365 Ga0207656_10000001
366 Ga0207654_10000001
367 Ga0207695_10007931
368 Ga0207671_10000001
369 Ga0207694_10004588
370 Ga0207690_10000984
371 Ga0207706_10024667
372 Ga0207691_10015244
373 Ga0207711_10000340
374 Ga0207711_10018604
375 Ga0207679_10016223
376 Ga0207667_10033499
377 Ga0207668_10000882
378 Ga0207668_10026661
379 Ga0207677_10005251
380 Ga0207703_10000238
381 Ga0207703_10010084
382 Ga0207703_10035586
383 Ga0207639_10015325
384 Ga0207641_10032633
385 Ga0207641_10086675
386 Ga0207698_10012672
387 Ga0209281_1000349
388 Ga0209281_1000359
389 Ga0307517_10017528
390 Ga0307515_10000050
391 Ga0307515_10000167
392 Ga0307515_10004403
393 Ga0307515_10015451
394 Ga0307515_10031262
395 Ga0307515_10040555
396 Ga0307515_10043067
397 Ga0307515_10101514
398 Ga0307511_10001085
399 Ga0307512_10004340
400 Ga0307512_10023420
401 Ga0307509_10004639
402 Ga0307509_10014675
403 Ga0307509_10068265
404 Ga0307408_100001071
405 Ga0307508_10006502
406 Ga0307508_10014746
407 Ga0307508_10019404
408 Ga0307514_10004770
409 Ga0307516_10000177
410 Ga0307516_10003964
411 Ga0307516_10016011
412 Ga0307516_10025884
413 Ga0307516_10027221
414 Ga0307405_10009449
415 Ga0307518_10057775
416 Ga0307406_10000115
417 Ga0307412_10000980
418 Ga0307409_100038863
419 Ga0307416_100032721
420 Ga0307507_10000016
421 Ga0307507_10014084
422 Ga0307507_10017997
423 Ga0307507_10047782
424 Ga0307510_10003616
425 Ga0307510_10025869
426 Ga0373951_0000016
427 Ga0373956_0000167
428 Ga0373942_0000695
429 Ga0373935_0010597
430 Ga0373927_0000124
431 Ga0373933_0002609
432 Ga0395899_0000833
433 Ga0395899_0000858
434 Ga0395898_0002189
435 Ga0436363_0862917
436 Ga0436362_0484737
437 Ga0451793_0436155
438 Ga0439449_0001846
439 Ga0439449_0002861
440 Ga0466969_0002800
441 Ga0466969_0037873
442 Ga0466969_0041740
443 Ga0466969_0045988
444 Ga0466966_0000603
445 Ga0466966_0009825
446 Ga0466961_0053437
447 Ga0466964_0027016
448 Ga0466971_0013355
449 Ga0466968_0000004
450 Ga0466970_0004834
451 Ga0466970_0008003
452 Ga0466970_0009292
453 Ga0466960_0001602
454 Ga0466959_0001924
455 Ga0466959_0016870
456 Ga0466958_0009839
457 Ga0466967_0010281
458 Ga0495617_003323
459 Ga0495592_0019662
460 Ga0495603_0002711
461 Ga0495603_0009204
462 Ga0495629_0000729
463 Ga0495629_0061104
464 Ga0495651_0004875
465 Ga0495662_0000151
466 Ga0495664_0002212
467 Ga0495594_0031523
468 Ga0495606_0005826
469 Ga0495610_0027115
470 Ga0495616_0003623
471 Ga0495620_0002537
472 Ga0495620_0006964
473 Ga0495643_0001461
474 Ga0495652_0009656
475 Ga0495652_0149431
476 Ga0495654_0017978
477 Ga0495640_0045557
478 Ga0495587_0001854
479 Ga0495668_0004244
480 Ga0495668_0006602
481 Ga0495634_0002718
482 Ga0495625_0000716
483 Ga0495635_0000606
484 Ga0495635_0036371
485 Ga0495657_0000364
486 Ga0495646_0020611
487 Ga0495613_0009156
488 Ga0495649_0046617
489 Ga0495589_0012176
490 Ga0495660_0014791
491 Ga0495581_0001849
492 Ga0495604_0001704
493 Ga0495604_0029339
494 Ga0495676_0000768
495 Ga0495676_0005303
496 Ga0495676_0029534
497 Ga0495687_001025
498 Ga0495687_002596
499 Ga0495685_002815
500 Ga0495685_010204
501 Ga0495685_012683
502 Ga0495685_014457
503 Ga0495593_0006148
504 Ga0495602_0015682
505 Ga0495614_0016439
506 Ga0495626_0000069
507 Ga0495626_0040652
508 Ga0496103_0031614
509 Ga0496108_0000104
510 Ga0496117_0000196
511 Ga0496117_0010609
512 Ga0496119_0000453
513 Ga0496120_0000516
514 Ga0496122_0024878
515 Ga0496124_0000242
516 Ga0496126_0000056
517 Ga0496126_0000569
518 Ga0496126_0010895
519 Ga0496126_0028292
520 Ga0496126_0064266
521 Ga0501316_000349
522 Ga0501031_0007808
523 Ga0501036_0029842
524 Ga0501036_0034839
525 Ga0501039_0023583
526 Ga0501043_0010147
527 Ga0501047_0048970
528 Ga0501047_0079272
529 Ga0501048_0002983
530 Ga0501035_0001325
531 Ga0501035_0005876
532 Ga0501035_0040242
533 Ga0501044_0029095
534 Ga0501044_0029411
535 Ga0501044_0045366
536 Ga0495601_0068977
537 Ga0495612_0000998
538 Ga0495619_0002746
539 Ga0500583_0021484
540 Ga0500651_0043638
541 Ga0500620_001073
542 2839986554
543 2547405542
544 2550900269
545 2555229298
546 2555468846
547 2585319510
548 2585320324
549 2601640007
550 2616702902
551 2643760512
552 2643846972
553 2643877485
554 2643996966
555 2644081428
556 2644384540
557 2644443510
558 2644459595
559 2644627174
560 2644664562
561 2644738368
562 2655034410
563 2686998982
564 2687500288
565 2728530173
566 2753268080
567 2753271190
568 2774382865
569 2774394123
570 2774394821
571 2784585884
572 2808629069
573 2808846017
574 2808849722
575 2808884938
576 2809194325
577 2809195028
578 2809225618
579 2809229379
580 2810364367
581 2812314178
582 2812349078
583 2812349915
584 2812483189
585 2819699971
586 2819723184
587 2821271172
588 2823530225
589 2832009590
590 2852635534
591 2857722565
592 2857730913
593 2862281729
594 2862581908
595 2862709293
596 2866071385
597 2868091362
598 2870724246
599 2881639821
600 2887482796
601 2891399325
602 2891557352
603 2891972479
604 2891973166
605 2895662320
606 2904433750
607 2906802520
608 2907204495
609 2908667451
610 2919094537
611 2919394535
612 2919446759
613 2919474607
614 2919727085
615 2928122519
616 2932434390
617 2935894073
618 2938652970
619 2945956601
620 2946005513
621 2946006654
622 2946079696
623 2954008699
624 2954776361
625 2966604986
626 2968558889
627 2971404064
628 2971513288
629 2977253053
630 2980178398
631 2984583562
632 2988227072
633 2996633040
634 3006494003
635 8001787474
636 8002322845
637 8007374452
638 8008486731
639 8016256519
640 8023627789
641 8025525979
642 8046353198
643 8046998969
644 8054466255

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02449

Glyco_hydro_42

Beta-galactosidase

45

416

0.99

PF08532

Glyco_hydro_42M

Beta-galactosidase trimerisation domain

427

638

0.96

PF08533

Glyco_hydro_42C

Beta-galactosidase C-terminal domain

648

693

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dfa-assembly1.cif.gz_B 3d structure of the e323a catalytic mutant of gan42b, a gh42 beta-galactosidase from g. stearothermophilus 0.9785 2 688
4oif-assembly1.cif.gz_C 3d structure of gan42b, a gh42 beta-galactosidase from g. 0.9763 4 688
5e9a-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.9746 3 688
4oif-assembly1.cif.gz_C 3d structure of gan42b, a gh42 beta-galactosidase from g. 0.9721 4 688
5dfa-assembly1.cif.gz_B 3d structure of the e323a catalytic mutant of gan42b, a gh42 beta-galactosidase from g. stearothermophilus 0.9714 2 688
ID Description Score Start End Superfamily
5e9aB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9735 410 625 3.40.50.880
5dfaC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9677 4 408 3.20.20.80
5dfaC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.963 4 408 3.20.20.80
5dfaC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9626 412 622 3.40.50.880
3ttyC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9579 410 624 3.40.50.880
ID Description Score Start End GO Terms
AF-A0A7X9HVF5-F1-model_v4 Beta-galactosidase 0.9958 16 154 GO:0004565
GO:0005975
GO:0009341
AF-A0A1Q6SLU2-F1-model_v4 Glycoside hydrolase family 42 N-terminal domain-containing protein 0.9947 16 166 GO:0004565
GO:0005975
GO:0009341
AF-A0A377TRH9-F1-model_v4 Beta-galactosidase (EC 3.2.1.23) 0.9934 98 249 GO:0004565
GO:0005975
GO:0009341
AF-A0A806IC53-F1-model_v4 deleted 0.9919 12 200
AF-D0R324-F1-model_v4 Glycoside hydrolase family 42 N-terminal domain-containing protein 0.9918 83 244 GO:0004565
GO:0005975
GO:0009341

Map