F395729

General Info

Members Datasets Scaffolds Average Seq Length
301 191 602 270

Family's Representative Sequence

Representative Sequence 3300005341|Ga0070691_10023131|Ga0070691_100231312
Length 318
Sequence MNEALVVIPLTAAVPVAPTFGRGLDRDCGSSMASRKYLNLLPTLFIAATAVAYVGSNANPAYSASRRNGRVLRSATTLASTHTGNVSAAIGSVFSGRVSLKPGARNNEEIETSTRNALGALASAVRPLSNSRALPDAFESYFAFKAAHPDKVRKPYLYFVDYGLPSTQPRGYVFDMDALSIVDGPFMVAHGRGSAPNSAGVPKRFSNAFGAATTSLGLYVAQEIYAFTGHAGGQPYHSVGLRLAGVSGDFNNNARARGVVAHGAPYVTSTRAGRSEGCPAMEPARAKQLLPKLANGGLVFLFAPDSNWMTHDPWIDAG

Samples

Sample ID Description Type Environment
1 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
15 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
16 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
17 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
18 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
21 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
22 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
26 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
27 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
28 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
29 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
30 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
31 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
32 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
33 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
34 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
35 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
36 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
39 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
40 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
41 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
42 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
43 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
44 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
45 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
46 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
47 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
48 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
49 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
50 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
51 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
52 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
53 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
54 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
55 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
56 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
57 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
61 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
62 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
63 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
64 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
65 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
66 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
67 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
68 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
69 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
70 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
71 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
72 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
73 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
74 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
75 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
76 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
77 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
78 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
121 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
122 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
123 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
124 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
125 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
126 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
127 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
128 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
129 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
130 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
131 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
132 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
133 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
134 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
135 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
136 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
137 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
138 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
139 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
140 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
141 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
142 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
143 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
144 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
145 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
146 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
147 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
148 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
149 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
150 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
151 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
152 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
153 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
154 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
155 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
156 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
157 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
158 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
159 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
160 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
161 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
162 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
163 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
164 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
165 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
166 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
168 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
171 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
172 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
173 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
174 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
175 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
176 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
177 3300049672 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought Metagenome Rhizosphere
178 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
179 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
180 3300049680 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_B_3_drought Metagenome Rhizosphere
181 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
182 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
183 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
184 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
185 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
186 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
187 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
188 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
189 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
190 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
191 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 99.67
Stem 0
Stem Tuber 0
Unclassified 21.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070691_10023131 3300005341 Bacteria 2885
2 MBSR1b_contig_13130016 2162886012 Bacteria 2108
3 Ga0065715_10096520 3300005293 Bacteria 3865
4 Ga0070658_10001339 3300005327 Bacteria 21017
5 Ga0070658_10002916 3300005327 Bacteria 14186
6 Ga0070658_10011244 3300005327 Bacteria 7175
7 Ga0070658_10142923 3300005327 Bacteria 1999
8 Ga0070658_10143706 3300005327 Bacteria 1994
9 Ga0070658_10408960 3300005327 Bacteria 1166
10 Ga0070683_100008525 3300005329 Bacteria 8711
11 Ga0070683_100023560 3300005329 Bacteria 5507
12 Ga0070683_100129864 3300005329 Bacteria 2384
13 Ga0070690_100075229 3300005330 Bacteria 2201
14 Ga0070670_100006083 3300005331 Bacteria 10204
15 Ga0068869_100037545 3300005334 Bacteria 3445
16 Ga0068869_100417350 3300005334 Bacteria 1107
17 Ga0070680_100006881 3300005336 Bacteria 8672
18 Ga0070680_100009397 3300005336 Bacteria 7512
19 Ga0070680_100578059 3300005336 Unclassified 964
20 Ga0070682_100000451 3300005337 Bacteria 26141
21 Ga0070682_100014043 3300005337 Bacteria 4622
22 Ga0068868_100005403 3300005338 Bacteria 8978
23 Ga0068868_100198370 3300005338 Bacteria 1672
24 Ga0070660_100319176 3300005339 Archaea 1276
25 Ga0070689_100641718 3300005340 Unclassified 923
26 Ga0070687_100017448 3300005343 Unclassified 3301
27 Ga0070661_100000859 3300005344 Bacteria 21828
28 Ga0070661_100012208 3300005344 Bacteria 6006
29 Ga0070661_100083546 3300005344 Bacteria 2359
30 Ga0070692_10038709 3300005345 Bacteria 2432
31 Ga0070668_100155684 3300005347 Bacteria 1851
32 Ga0070668_100245647 3300005347 Bacteria 1484
33 Ga0070669_100612346 3300005353 Unclassified 913
34 Ga0070675_100017918 3300005354 Bacteria 5633
35 Ga0070675_100032052 3300005354 Unclassified 4251
36 Ga0070671_100041938 3300005355 Unclassified 3804
37 Ga0070671_100214632 3300005355 Bacteria 1632
38 Ga0070673_100029212 3300005364 Bacteria 4109
39 Ga0070673_100122446 3300005364 Unclassified 2172
40 Ga0070688_100179151 3300005365 Bacteria 1469
41 Ga0070659_100001941 3300005366 Bacteria 14792
42 Ga0070659_100058437 3300005366 Bacteria 3044
43 Ga0070659_100068017 3300005366 Unclassified 2825
44 Ga0070659_100118789 3300005366 Bacteria 2139
45 Ga0070667_100272557 3300005367 Unclassified 1518
46 Ga0070714_100001299 3300005435 Bacteria 18068
47 Ga0070714_100001973 3300005435 Bacteria 14991
48 Ga0070714_100016584 3300005435 Archaea 5953
49 Ga0070714_100027109 3300005435 Bacteria 4741
50 Ga0070714_100030533 3300005435 Bacteria 4486
51 Ga0070713_100000139 3300005436 Bacteria 48014
52 Ga0070713_100003009 3300005436 Bacteria 11072
53 Ga0070710_10094013 3300005437 Bacteria 1773
54 Ga0070711_100096480 3300005439 Unclassified 2142
55 Ga0070711_100397282 3300005439 Unclassified 1118
56 Ga0070705_100062659 3300005440 Unclassified 2215
57 Ga0070663_100000596 3300005455 Bacteria 19234
58 Ga0070662_100009979 3300005457 Bacteria 6217
59 Ga0070681_10003214 3300005458 Bacteria 15226
60 Ga0070681_10032735 3300005458 Bacteria 5219
61 Ga0070681_10060364 3300005458 Bacteria 3769
62 Ga0070681_10446913 3300005458 Bacteria 1204
63 Ga0070685_10045798 3300005466 Unclassified 2509
64 Ga0070699_100089698 3300005518 Bacteria 2687
65 Ga0070699_100238155 3300005518 Bacteria 1623
66 Ga0070679_100003963 3300005530 Bacteria 13632
67 Ga0070679_100011235 3300005530 Bacteria 8537
68 Ga0070679_100075757 3300005530 Bacteria 3354
69 Ga0070679_100099276 3300005530 Unclassified 2899
70 Ga0070679_100210191 3300005530 Bacteria 1910
71 Ga0070679_100312134 3300005530 Bacteria 1522
72 Ga0070679_100330282 3300005530 Bacteria 1473
73 Ga0070684_100001022 3300005535 Bacteria 19936
74 Ga0070684_100007169 3300005535 Bacteria 8662
75 Ga0070684_100438994 3300005535 Unclassified 1206
76 Ga0068853_100168728 3300005539 Bacteria 1979
77 Ga0070686_100043091 3300005544 Unclassified 2830
78 Ga0070686_100068794 3300005544 Bacteria 2310
79 Ga0070695_100008880 3300005545 Bacteria 5968
80 Ga0070693_100003957 3300005547 Bacteria 6952
81 Ga0068855_100109439 3300005563 Bacteria 3173
82 Ga0070664_100000821 3300005564 Bacteria 23917
83 Ga0070664_100002707 3300005564 Bacteria 14309
84 Ga0070664_100666230 3300005564 Bacteria 968
85 Ga0068857_100002459 3300005577 Bacteria 15135
86 Ga0068857_100040070 3300005577 Bacteria 4153
87 Ga0068856_100015683 3300005614 Bacteria 7326
88 Ga0070702_100000247 3300005615 Bacteria 18409
89 Ga0068852_100200820 3300005616 Unclassified 1887
90 Ga0068852_100399707 3300005616 Bacteria 1351
91 Ga0068859_100071788 3300005617 Unclassified 3497
92 Ga0068859_100132407 3300005617 Bacteria 2565
93 Ga0068864_100015104 3300005618 Bacteria 6420
94 Ga0068870_10014051 3300005840 Bacteria 3775
95 Ga0068863_100004865 3300005841 Bacteria 13235
96 Ga0070717_10016126 3300006028 Bacteria 5787
97 Ga0070717_10229173 3300006028 Bacteria 1635
98 Ga0070717_10405202 3300006028 Bacteria 1226
99 Ga0070716_100015014 3300006173 Unclassified 3974
100 Ga0070712_100000830 3300006175 Bacteria 18385
101 Ga0070712_100360356 3300006175 Bacteria 1192
102 Ga0097621_100024668 3300006237 Unclassified 4699
103 Ga0068871_100005324 3300006358 Bacteria 9017
104 Ga0068865_100063502 3300006881 Bacteria 2596
105 Ga0075436_100006514 3300006914 Bacteria 7999
106 Ga0097620_100071790 3300006931 Unclassified 3497
107 Ga0097620_100132396 3300006931 Bacteria 2565
108 Ga0105240_10089047 3300009093 Unclassified 3775
109 Ga0105240_10415480 3300009093 Unclassified 1512
110 Ga0105240_10689594 3300009093 Bacteria 1116
111 Ga0105245_10150205 3300009098 Bacteria 2202
112 Ga0105245_10192296 3300009098 Unclassified 1955
113 Ga0105245_10235886 3300009098 Bacteria 1771
114 Ga0105243_10416159 3300009148 Bacteria 1252
115 Ga0105248_10007462 3300009177 Bacteria 11998
116 Ga0105248_10341688 3300009177 Bacteria 1685
117 Ga0105238_10017038 3300009551 Bacteria 7376
118 Ga0105239_10039833 3300010375 Bacteria 5148
119 Ga0105246_10036726 3300011119 Unclassified 3284
120 Ga0157373_10030988 3300013100 Unclassified 3848
121 Ga0157373_10100699 3300013100 Bacteria 2033
122 Ga0157373_10149292 3300013100 Unclassified 1644
123 Ga0157371_10005863 3300013102 Bacteria 10264
124 Ga0157371_10083375 3300013102 Bacteria 2264
125 Ga0157371_10122459 3300013102 Bacteria 1850
126 Ga0157371_10258217 3300013102 Bacteria 1256
127 Ga0157371_10313780 3300013102 Bacteria 1137
128 Ga0157369_10009185 3300013105 Bacteria 11312
129 Ga0157369_10196408 3300013105 Unclassified 2119
130 Ga0157374_10002427 3300013296 Bacteria 15712
131 Ga0157374_10047858 3300013296 Unclassified 3966
132 Ga0157372_10003904 3300013307 Bacteria 16022
133 Ga0157372_10006069 3300013307 Bacteria 12833
134 Ga0157372_10010440 3300013307 Bacteria 9878
135 Ga0157372_10016744 3300013307 Bacteria 7870
136 Ga0157372_10017486 3300013307 Bacteria 7694
137 Ga0157372_10064608 3300013307 Bacteria 4106
138 Ga0157372_10096455 3300013307 Unclassified 3370
139 Ga0157372_10243076 3300013307 Bacteria 2089
140 Ga0157372_10272256 3300013307 Bacteria 1968
141 Ga0157375_10030286 3300013308 Bacteria 5101
142 Ga0157375_10083177 3300013308 Bacteria 3245
143 Ga0163163_10024655 3300014325 Bacteria 5726
144 Ga0182008_10045142 3300014497 Bacteria 2191
145 Ga0157377_10012669 3300014745 Unclassified 4245
146 Ga0157379_10462515 3300014968 Unclassified 1172
147 Ga0157376_10002782 3300014969 Bacteria 11945
148 Ga0157376_10151464 3300014969 Bacteria 2092
149 Ga0163161_10330322 3300017792 Unclassified 1207
150 Ga0207692_10074309 3300025898 Bacteria 1801
151 Ga0207680_10070317 3300025903 Bacteria 2166
152 Ga0207699_10036802 3300025906 Unclassified 2793
153 Ga0207699_10123237 3300025906 Unclassified 1680
154 Ga0207643_10197370 3300025908 Bacteria 1224
155 Ga0207705_10002996 3300025909 Bacteria 12888
156 Ga0207705_10014285 3300025909 Bacteria 5718
157 Ga0207705_10017920 3300025909 Bacteria 5065
158 Ga0207705_10177057 3300025909 Unclassified 1608
159 Ga0207684_10513648 3300025910 Unclassified 1026
160 Ga0207707_10021809 3300025912 Bacteria 5598
161 Ga0207707_10023896 3300025912 Bacteria 5344
162 Ga0207707_10153495 3300025912 Bacteria 2013
163 Ga0207695_10004471 3300025913 Bacteria 19044
164 Ga0207693_10045553 3300025915 Bacteria 3447
165 Ga0207663_10089450 3300025916 Unclassified 2039
166 Ga0207663_10321058 3300025916 Unclassified 1164
167 Ga0207660_10057949 3300025917 Bacteria 2776
168 Ga0207660_10572324 3300025917 Unclassified 919
169 Ga0207662_10011926 3300025918 Bacteria 4833
170 Ga0207657_10002142 3300025919 Bacteria 21392
171 Ga0207657_10022822 3300025919 Bacteria 5843
172 Ga0207657_10176865 3300025919 Archaea 1727
173 Ga0207649_10011045 3300025920 Bacteria 4969
174 Ga0207649_10043883 3300025920 Bacteria 2736
175 Ga0207649_10218419 3300025920 Unclassified 1356
176 Ga0207652_10011093 3300025921 Bacteria 7263
177 Ga0207652_10022564 3300025921 Bacteria 5208
178 Ga0207652_10075145 3300025921 Bacteria 2944
179 Ga0207652_10238456 3300025921 Bacteria 1639
180 Ga0207681_10408356 3300025923 Bacteria 1098
181 Ga0207650_10001542 3300025925 Bacteria 16500
182 Ga0207650_10309653 3300025925 Bacteria 1291
183 Ga0207659_10001037 3300025926 Bacteria 16441
184 Ga0207687_10010547 3300025927 Bacteria 6037
185 Ga0207687_10292134 3300025927 Unclassified 1310
186 Ga0207700_10001941 3300025928 Bacteria 11762
187 Ga0207700_10031530 3300025928 Unclassified 3767
188 Ga0207664_10002881 3300025929 Bacteria 11447
189 Ga0207664_10086914 3300025929 Unclassified 2555
190 Ga0207664_10177781 3300025929 Bacteria 1826
191 Ga0207644_10025585 3300025931 Bacteria 4059
192 Ga0207644_10561673 3300025931 Bacteria 945
193 Ga0207690_10094723 3300025932 Unclassified 2119
194 Ga0207706_10019740 3300025933 Bacteria 6062
195 Ga0207706_10257850 3300025933 Bacteria 1523
196 Ga0207711_10016195 3300025941 Bacteria 6190
197 Ga0207711_10540330 3300025941 Bacteria 1087
198 Ga0207689_10037753 3300025942 Unclassified 4004
199 Ga0207689_10042260 3300025942 Bacteria 3772
200 Ga0207689_10250070 3300025942 Bacteria 1466
201 Ga0207661_10001172 3300025944 Bacteria 17516
202 Ga0207661_10001601 3300025944 Bacteria 15392
203 Ga0207661_10025666 3300025944 Bacteria 4483
204 Ga0207661_10052144 3300025944 Plasmid 3267
205 Ga0207661_10471258 3300025944 Unclassified 1145
206 Ga0207679_10000195 3300025945 Bacteria 48538
207 Ga0207679_10048056 3300025945 Unclassified 3104
208 Ga0207679_10296061 3300025945 Bacteria 1393
209 Ga0207667_10022659 3300025949 Bacteria 6929
210 Ga0207651_10218512 3300025960 Unclassified 1539
211 Ga0207668_10042620 3300025972 Unclassified 3075
212 Ga0207640_10000568 3300025981 Bacteria 22029
213 Ga0207677_10028631 3300026023 Unclassified 3527
214 Ga0207703_10388878 3300026035 Bacteria 1292
215 Ga0207639_10123604 3300026041 Bacteria 2131
216 Ga0207678_10000909 3300026067 Bacteria 27083
217 Ga0207708_10561925 3300026075 Bacteria 963
218 Ga0207702_10005161 3300026078 Bacteria 11491
219 Ga0207641_10003805 3300026088 Bacteria 13243
220 Ga0207676_10001606 3300026095 Bacteria 16641
221 Ga0207674_10005709 3300026116 Bacteria 14747
222 Ga0207674_10052601 3300026116 Bacteria 4153
223 Ga0207698_10013236 3300026142 Bacteria 5435
224 Ga0207698_10066840 3300026142 Bacteria 2832
225 Ga0207698_10219696 3300026142 Bacteria 1716
226 Ga0209966_1002086 3300027695 Bacteria 3340
227 Ga0209998_10001010 3300027717 Bacteria 7076
228 Ga0307405_10050655 3300031731 Bacteria 2572
229 Ga0307410_10067885 3300031852 Bacteria 2461
230 Ga0307410_10201736 3300031852 Unclassified 1519
231 Ga0307407_10084350 3300031903 Bacteria 1930
232 Ga0307412_10156998 3300031911 Bacteria 1685
233 Ga0307409_100708433 3300031995 Unclassified 1007
234 Ga0307416_100025699 3300032002 Bacteria 4323
235 Ga0307416_100350564 3300032002 Unclassified 1494
236 Ga0307415_100176457 3300032126 Bacteria 1672
237 Ga0307415_100313491 3300032126 Bacteria 1305
238 Ga0373930_0031421 3300034816 Unclassified 1094
239 Ga0373938_0012941 3300034957 Unclassified 1575
240 Ga0373944_0020682 3300035089 Bacteria 1898
241 Ga0373923_0019080 3300035111 Unclassified 2649
242 Ga0373956_0025774 3300035119 Unclassified 2543
243 Ga0373960_0022556 3300035121 Unclassified 1687
244 Ga0373943_0009453 3300035170 Bacteria 4369
245 Ga0373955_0026171 3300035172 Bacteria 3002
246 Ga0373935_0011052 3300035692 Bacteria 5424
247 Ga0373933_0000925 3300035724 Bacteria 17885
248 Ga0395905_0208901 3300037471 Bacteria 1829
249 Ga0395905_0257794 3300037471 Bacteria 1628
250 Ga0436364_1299757 3300037853 Bacteria 11022
251 Ga0395901_0037036 3300038443 Bacteria 5045
252 Ga0466966_0104814 3300044684 Bacteria 1746
253 Ga0466961_0037316 3300044693 Bacteria 3118
254 Ga0466959_0023132 3300045049 Bacteria 4598
255 Ga0466967_0190820 3300045976 Unclassified 1936
256 Ga0495592_0003220 3300046454 Bacteria 11705
257 Ga0495653_0020194 3300046463 Bacteria 5400
258 Ga0495664_0296093 3300046477 Bacteria 977
259 Ga0495608_0005043 3300046511 Bacteria 9444
260 Ga0495618_0160165 3300046514 Bacteria 1435
261 Ga0495628_0112227 3300046516 Bacteria 2095
262 Ga0495652_0129638 3300046529 Bacteria 1998
263 Ga0495587_0051611 3300046536 Unclassified 2430
264 Ga0495645_0000300 3300046543 Bacteria 35950
265 Ga0495667_0022424 3300046559 Unclassified 4253
266 Ga0495659_0141480 3300046664 Unclassified 961
267 Ga0495623_0000672 3300046679 Bacteria 22720
268 Ga0495600_0000162 3300046809 Bacteria 38982
269 Ga0495604_0003089 3300047317 Bacteria 13321
270 Ga0495674_0002524 3300047319 Bacteria 17805
271 Ga0495680_0006477 3300047322 Bacteria 10869
272 Ga0495675_0002791 3300047444 Bacteria 10478
273 Ga0495684_0000344 3300047471 Bacteria 37436
274 Ga0495593_0084268 3300047673 Bacteria 1641
275 Ga0495602_0004949 3300048088 Bacteria 13957
276 Ga0501032_0270821 3300049569 Bacteria 1100
277 Ga0501038_0189554 3300049574 Bacteria 1655
278 Ga0501043_0014293 3300049579 Bacteria 6212
279 Ga0501047_0184593 3300049581 Bacteria 1951
280 Ga0501070_0033383 3300049586 Bacteria 4307
281 Ga0501208_004646 3300049655 Bacteria 1634
282 Ga0501216_007167 3300049660 Unclassified 1728
283 Ga0501217_015487 3300049661 Bacteria 1736
284 Ga0501227_025363 3300049665 Bacteria 1390
285 Ga0501233_009922 3300049668 Bacteria 1866
286 Ga0501235_000717 3300049669 Bacteria 6766
287 Ga0501239_006600 3300049672 Bacteria 1197
288 Ga0501242_001915 3300049674 Bacteria 2149
289 Ga0501249_061290 3300049679 Bacteria 872
290 Ga0501250_005227 3300049680 Bacteria 1325
291 Ga0501259_025200 3300049688 Bacteria 1088
292 Ga0501261_012416 3300049690 Bacteria 1146
293 Ga0501221_001203 3300049704 Unclassified 4283
294 Ga0501225_0003430 3300049705 Bacteria 4804
295 Ga0501283_014969 3300049779 Bacteria 1190
296 Ga0501044_0070116 3300049823 Bacteria 3567
297 nmdc:mga08x19_18959_c2 3300050514 Unclassified 3038
298 Ga0495601_0040085 3300053077 Plasmid 2933
299 Ga0495612_0164187 3300053078 Bacteria 970
300 Ga0495595_0071017 3300053084 Bacteria 1646
301 Ga0495619_0003079 3300053085 Bacteria 10821
302 Ga0070691_10023131
303 MBSR1b_contig_13130016
304 Ga0065715_10096520
305 Ga0070658_10001339
306 Ga0070658_10002916
307 Ga0070658_10011244
308 Ga0070658_10142923
309 Ga0070658_10143706
310 Ga0070658_10408960
311 Ga0070683_100008525
312 Ga0070683_100023560
313 Ga0070683_100129864
314 Ga0070690_100075229
315 Ga0070670_100006083
316 Ga0068869_100037545
317 Ga0068869_100417350
318 Ga0070680_100006881
319 Ga0070680_100009397
320 Ga0070680_100578059
321 Ga0070682_100000451
322 Ga0070682_100014043
323 Ga0068868_100005403
324 Ga0068868_100198370
325 Ga0070660_100319176
326 Ga0070689_100641718
327 Ga0070687_100017448
328 Ga0070661_100000859
329 Ga0070661_100012208
330 Ga0070661_100083546
331 Ga0070692_10038709
332 Ga0070668_100155684
333 Ga0070668_100245647
334 Ga0070669_100612346
335 Ga0070675_100017918
336 Ga0070675_100032052
337 Ga0070671_100041938
338 Ga0070671_100214632
339 Ga0070673_100029212
340 Ga0070673_100122446
341 Ga0070688_100179151
342 Ga0070659_100001941
343 Ga0070659_100058437
344 Ga0070659_100068017
345 Ga0070659_100118789
346 Ga0070667_100272557
347 Ga0070714_100001299
348 Ga0070714_100001973
349 Ga0070714_100016584
350 Ga0070714_100027109
351 Ga0070714_100030533
352 Ga0070713_100000139
353 Ga0070713_100003009
354 Ga0070710_10094013
355 Ga0070711_100096480
356 Ga0070711_100397282
357 Ga0070705_100062659
358 Ga0070663_100000596
359 Ga0070662_100009979
360 Ga0070681_10003214
361 Ga0070681_10032735
362 Ga0070681_10060364
363 Ga0070681_10446913
364 Ga0070685_10045798
365 Ga0070699_100089698
366 Ga0070699_100238155
367 Ga0070679_100003963
368 Ga0070679_100011235
369 Ga0070679_100075757
370 Ga0070679_100099276
371 Ga0070679_100210191
372 Ga0070679_100312134
373 Ga0070679_100330282
374 Ga0070684_100001022
375 Ga0070684_100007169
376 Ga0070684_100438994
377 Ga0068853_100168728
378 Ga0070686_100043091
379 Ga0070686_100068794
380 Ga0070695_100008880
381 Ga0070693_100003957
382 Ga0068855_100109439
383 Ga0070664_100000821
384 Ga0070664_100002707
385 Ga0070664_100666230
386 Ga0068857_100002459
387 Ga0068857_100040070
388 Ga0068856_100015683
389 Ga0070702_100000247
390 Ga0068852_100200820
391 Ga0068852_100399707
392 Ga0068859_100071788
393 Ga0068859_100132407
394 Ga0068864_100015104
395 Ga0068870_10014051
396 Ga0068863_100004865
397 Ga0070717_10016126
398 Ga0070717_10229173
399 Ga0070717_10405202
400 Ga0070716_100015014
401 Ga0070712_100000830
402 Ga0070712_100360356
403 Ga0097621_100024668
404 Ga0068871_100005324
405 Ga0068865_100063502
406 Ga0075436_100006514
407 Ga0097620_100071790
408 Ga0097620_100132396
409 Ga0105240_10089047
410 Ga0105240_10415480
411 Ga0105240_10689594
412 Ga0105245_10150205
413 Ga0105245_10192296
414 Ga0105245_10235886
415 Ga0105243_10416159
416 Ga0105248_10007462
417 Ga0105248_10341688
418 Ga0105238_10017038
419 Ga0105239_10039833
420 Ga0105246_10036726
421 Ga0157373_10030988
422 Ga0157373_10100699
423 Ga0157373_10149292
424 Ga0157371_10005863
425 Ga0157371_10083375
426 Ga0157371_10122459
427 Ga0157371_10258217
428 Ga0157371_10313780
429 Ga0157369_10009185
430 Ga0157369_10196408
431 Ga0157374_10002427
432 Ga0157374_10047858
433 Ga0157372_10003904
434 Ga0157372_10006069
435 Ga0157372_10010440
436 Ga0157372_10016744
437 Ga0157372_10017486
438 Ga0157372_10064608
439 Ga0157372_10096455
440 Ga0157372_10243076
441 Ga0157372_10272256
442 Ga0157375_10030286
443 Ga0157375_10083177
444 Ga0163163_10024655
445 Ga0182008_10045142
446 Ga0157377_10012669
447 Ga0157379_10462515
448 Ga0157376_10002782
449 Ga0157376_10151464
450 Ga0163161_10330322
451 Ga0207692_10074309
452 Ga0207680_10070317
453 Ga0207699_10036802
454 Ga0207699_10123237
455 Ga0207643_10197370
456 Ga0207705_10002996
457 Ga0207705_10014285
458 Ga0207705_10017920
459 Ga0207705_10177057
460 Ga0207684_10513648
461 Ga0207707_10021809
462 Ga0207707_10023896
463 Ga0207707_10153495
464 Ga0207695_10004471
465 Ga0207693_10045553
466 Ga0207663_10089450
467 Ga0207663_10321058
468 Ga0207660_10057949
469 Ga0207660_10572324
470 Ga0207662_10011926
471 Ga0207657_10002142
472 Ga0207657_10022822
473 Ga0207657_10176865
474 Ga0207649_10011045
475 Ga0207649_10043883
476 Ga0207649_10218419
477 Ga0207652_10011093
478 Ga0207652_10022564
479 Ga0207652_10075145
480 Ga0207652_10238456
481 Ga0207681_10408356
482 Ga0207650_10001542
483 Ga0207650_10309653
484 Ga0207659_10001037
485 Ga0207687_10010547
486 Ga0207687_10292134
487 Ga0207700_10001941
488 Ga0207700_10031530
489 Ga0207664_10002881
490 Ga0207664_10086914
491 Ga0207664_10177781
492 Ga0207644_10025585
493 Ga0207644_10561673
494 Ga0207690_10094723
495 Ga0207706_10019740
496 Ga0207706_10257850
497 Ga0207711_10016195
498 Ga0207711_10540330
499 Ga0207689_10037753
500 Ga0207689_10042260
501 Ga0207689_10250070
502 Ga0207661_10001172
503 Ga0207661_10001601
504 Ga0207661_10025666
505 Ga0207661_10052144
506 Ga0207661_10471258
507 Ga0207679_10000195
508 Ga0207679_10048056
509 Ga0207679_10296061
510 Ga0207667_10022659
511 Ga0207651_10218512
512 Ga0207668_10042620
513 Ga0207640_10000568
514 Ga0207677_10028631
515 Ga0207703_10388878
516 Ga0207639_10123604
517 Ga0207678_10000909
518 Ga0207708_10561925
519 Ga0207702_10005161
520 Ga0207641_10003805
521 Ga0207676_10001606
522 Ga0207674_10005709
523 Ga0207674_10052601
524 Ga0207698_10013236
525 Ga0207698_10066840
526 Ga0207698_10219696
527 Ga0209966_1002086
528 Ga0209998_10001010
529 Ga0307405_10050655
530 Ga0307410_10067885
531 Ga0307410_10201736
532 Ga0307407_10084350
533 Ga0307412_10156998
534 Ga0307409_100708433
535 Ga0307416_100025699
536 Ga0307416_100350564
537 Ga0307415_100176457
538 Ga0307415_100313491
539 Ga0373930_0031421
540 Ga0373938_0012941
541 Ga0373944_0020682
542 Ga0373923_0019080
543 Ga0373956_0025774
544 Ga0373960_0022556
545 Ga0373943_0009453
546 Ga0373955_0026171
547 Ga0373935_0011052
548 Ga0373933_0000925
549 Ga0395905_0208901
550 Ga0395905_0257794
551 Ga0436364_1299757
552 Ga0395901_0037036
553 Ga0466966_0104814
554 Ga0466961_0037316
555 Ga0466959_0023132
556 Ga0466967_0190820
557 Ga0495592_0003220
558 Ga0495653_0020194
559 Ga0495664_0296093
560 Ga0495608_0005043
561 Ga0495618_0160165
562 Ga0495628_0112227
563 Ga0495652_0129638
564 Ga0495587_0051611
565 Ga0495645_0000300
566 Ga0495667_0022424
567 Ga0495659_0141480
568 Ga0495623_0000672
569 Ga0495600_0000162
570 Ga0495604_0003089
571 Ga0495674_0002524
572 Ga0495680_0006477
573 Ga0495675_0002791
574 Ga0495684_0000344
575 Ga0495593_0084268
576 Ga0495602_0004949
577 Ga0501032_0270821
578 Ga0501038_0189554
579 Ga0501043_0014293
580 Ga0501047_0184593
581 Ga0501070_0033383
582 Ga0501208_004646
583 Ga0501216_007167
584 Ga0501217_015487
585 Ga0501227_025363
586 Ga0501233_009922
587 Ga0501235_000717
588 Ga0501239_006600
589 Ga0501242_001915
590 Ga0501249_061290
591 Ga0501250_005227
592 Ga0501259_025200
593 Ga0501261_012416
594 Ga0501221_001203
595 Ga0501225_0003430
596 Ga0501283_014969
597 Ga0501044_0070116
598 nmdc:mga08x19_18959_c2
599 Ga0495601_0040085
600 Ga0495612_0164187
601 Ga0495595_0071017
602 Ga0495619_0003079

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13645

YkuD_2

L,D-transpeptidase catalytic domain

127

302

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gsq-assembly1.cif.gz_A structural basis for the inhibition of mycobacterium tuberculosis l,d-transpeptidase by meropenem, a drug effective against extensively drug-resistant strains 0.777 114 260
5uwv-assembly2.cif.gz_A crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.7725 114 259
5uwv-assembly3.cif.gz_D crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.7706 113 260
4qrb-assembly1.cif.gz_A structure and specificity of l-d-transpeptidase from mycobacterium tuberculosis and antibiotic resistance: calcium binding promotes dimer formation 0.7669 114 260
5lb1-assembly2.cif.gz_B crystal structure of the mycobacterium tuberculosis l,d-transpeptidase-2 (ldtmt2) bc-module with thionitrobenzoate (tnb) adduct at the active site cysteine-354 0.7635 114 260
ID Description Score Start End Superfamily
5uwvD03 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.7661 112 260 2.40.440.10
4a1iC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.7369 107 260 2.40.440.10
4a1iC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.7199 107 260 2.40.440.10
6iywC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.6975 114 260 2.40.440.10
5uwvD03 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.6868 112 260 2.40.440.10
ID Description Score Start End GO Terms
AF-A0A7X5WEQ0-F1-model_v4 deleted 0.9742 149 273
AF-A0A3D4YLI4-F1-model_v4 Uncharacterized protein 0.9718 159 255
AF-A0A838WEX6-F1-model_v4 Murein L,D-transpeptidase catalytic domain family protein 0.9333 73 209
AF-A0A838WEX6-F1-model_v4 Murein L,D-transpeptidase catalytic domain family protein 0.9205 73 209
AF-A0A7X5WEQ0-F1-model_v4 deleted 0.9167 149 273

Map