F384646

General Info

Members Datasets Scaffolds Average Seq Length
281 241 140 343

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2920760137|2920766910
Length 407
Sequence PASSDPNRLTGGLDRAASALPSANVHRTSELTNPLVSDTSSSSSWLQTVTEQKMQPFRLIGIGLACAYLAGCEEKAEVTPSPQQVRAVSASQTEYQPAAEITGEVKARIQSDLSFRVSGRVIERFVDVGLHVRAGDVLARLDDKEQRADVELARAGLESAQAIVKQRTLTFDRYEALLRSRSISQATFDQADKELRTARASLEAAEAALATAKDALSYTELKADADGIITAREIEVGRVVSAAQPAFTLAHDGPRDAVFEVFEAFFLEGRPLADVEVAPIADRALETQATVREVSPFIDTSSGTVRIKVALPDDAQWPLGTPVIGEFRSPSRKGIILPAGAIASAMGEPAVWLINPENRSVSLRKIAVASYRKSDLIVAGGIAPQDLIVTEGGKFLKEGQAVAWKGK

Samples

Sample ID Description Type Environment
1 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
2 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
3 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
4 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
5 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
6 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
7 2513237162 Rhizobium ruizarguesonis GB30 Isolate Nodule
8 2515154113 Rhizobium ruizarguesonis Vc2 Isolate Nodule
9 2515154114 Rhizobium ruizarguesonis Vh3 Isolate Nodule
10 2515154116 Rhizobium ruizarguesonis Ps8 Isolate Nodule
11 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
12 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
13 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
14 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
15 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
16 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
17 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
18 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
19 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
20 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
21 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
22 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
23 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
24 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
25 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
26 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
27 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
28 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
29 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
30 2600254931 Pseudomonas sp. NFIX28 Isolate Rhizoplane
31 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
32 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
33 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
34 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
35 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
36 2643221582 Rhizobium sp. Root651 Isolate Unclassified
37 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
38 2643221693 Rhizobium sp. Root491 Isolate Unclassified
39 2643221719 Rhizobium sp. Root274 Isolate Unclassified
40 2643221723 Ensifer sp. Root278 Isolate Unclassified
41 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
42 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
43 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
44 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
45 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
46 2791355123 Mesorhizobium sophorae ICMP 19535 Isolate Unclassified
47 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
48 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
49 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
50 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
51 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
52 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
53 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
54 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
55 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
56 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
57 2838680041 Rhizobium leguminosarum SEMIA 415 Isolate Nodule
58 2838694306 Rhizobium leguminosarum SEMIA 421 Isolate Nodule
59 2838707686 Rhizobium leguminosarum SEMIA 430 Isolate Nodule
60 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
61 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
62 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
63 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
64 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
65 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
66 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
67 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
68 2842077413 Rhizobium leguminosarum SEMIA 422 Isolate Nodule
69 2842118031 Rhizobium esperanzae SEMIA 420 Isolate Nodule
70 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
71 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
72 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
73 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
74 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
75 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
76 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
77 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
78 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
79 2842237096 Rhizobium leguminosarum SEMIA 482 Isolate Nodule
80 2842291075 Rhizobium leguminosarum SEMIA 491 Isolate Nodule
81 2842370503 Rhizobium leguminosarum SEMIA 4022 Isolate Nodule
82 2842377471 Rhizobium leguminosarum SEMIA 4024 Isolate Nodule
83 2842384541 Rhizobium leguminosarum SEMIA 4025 Isolate Nodule
84 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
85 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
86 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
87 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
88 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
89 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
90 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
91 2854911287 Brucella lupini LUP21 Isolate Unclassified
92 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
93 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
94 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
95 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
96 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
97 2919100787 Rhizobium sp. 1399 Isolate Rhizosphere
98 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
99 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
100 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
101 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
102 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
103 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
104 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
105 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
106 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
107 2935894831 Rhizobium leguminosarum SEMIA 419 Isolate Nodule
108 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
109 2958064165 Mesorhizobium sp. SARCC-RB16n Isolate Unclassified
110 2977523885 Sinorhizobium meliloti USDA1777 Isolate Nodule
111 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
112 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
113 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
114 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
115 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
116 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
117 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
118 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
119 2996887358 Rhizobium sp. R711 Isolate Nodule
120 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
121 3003930520 Sinorhizobium sp. BG8 Isolate Unclassified
122 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
123 3005445848 Rhizobium sp. WYJ-E13 Isolate Unclassified
124 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
125 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
126 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
127 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
128 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
129 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
130 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
131 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
132 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
133 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
134 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
135 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
136 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
137 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
138 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
139 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
140 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
141 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
142 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
143 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
144 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
145 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
146 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
147 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
148 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
149 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
150 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
151 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
152 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
153 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
154 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
155 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
156 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
157 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
158 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
159 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
160 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
161 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
162 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
163 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
164 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
165 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
166 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
167 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
168 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
169 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
170 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
171 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
172 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
173 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
174 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
175 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
176 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
177 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
178 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
179 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
180 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
181 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
182 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
183 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
184 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
185 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
186 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
187 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
188 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
189 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
190 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
191 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
192 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
193 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
194 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
195 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
196 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
197 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
198 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
199 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
200 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
201 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
202 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
203 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
204 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
205 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
206 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
207 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
208 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
209 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
210 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
211 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
212 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
213 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
214 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
215 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
216 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
217 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
218 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
219 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
220 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
221 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
222 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
223 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
224 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
225 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
226 641522639 Methylobacterium sp. 4-46 Isolate Nodule
227 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
228 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
229 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
230 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
231 8005258706 Rhizobium sp. R693 Isolate Nodule
232 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
233 8005321885 Rhizobium sp. R72 Isolate Nodule
234 8005376324 Rhizobium changzhiense WYCCWR 11279 Isolate Nodule
235 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
236 8005563573 Rhizobium sp. WYCCWR 11152 Isolate Nodule
237 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
238 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
239 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
240 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
241 8054558443 Rhizobium alarense TRM95111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 49.82
Metatranscriptomes 0
Isolates 50.18

Biome Distribution

Category Percentage (%)
Aerial Root 1.42
Bulb 0
Endosphere 22.78
Nodule 25.62
Rhizoplane 3.2
Rhizosphere 19.93
Stem 0
Stem Tuber 0
Unclassified 27.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000044 3300001979 Bacteria 40870
2 JGI25155J39150_1000021 3300002704 Bacteria 150730
3 JGI25156J39149_1000022 3300002705 Bacteria 150730
4 JGI25162J39368_1000004 3300002737 Bacteria 441040
5 JGI25162J39368_1000074 3300002737 Bacteria 121066
6 JGI25154J39366_1000048 3300002738 Bacteria 126252
7 JGI25157J39369_1000025 3300002741 Bacteria 150726
8 JGI25163J39215_1000089 3300002771 Bacteria 38915
9 JGI25164J39214_1000034 3300002772 Bacteria 139998
10 JGI25152J39213_1002868 3300002773 Bacteria 6169
11 JGI25150J39212_1001849 3300002774 Bacteria 5597
12 JGI25150J39212_1006037 3300002774 Bacteria 2539
13 JGI25159J45721_1002372 3300002987 Bacteria 7182
14 JGI25151J46595_10019412 3300003187 Bacteria 2889
15 JGI25165J46597_1000011 3300003214 Bacteria 441040
16 JGI25165J46597_1000201 3300003214 Bacteria 87622
17 JGI25165J46597_1002292 3300003214 Bacteria 6536
18 rootH1_10021286 3300003316 Bacteria 21728
19 rootH2_10001973 3300003320 Bacteria 14634
20 rootH2_10092073 3300003320 Bacteria 4662
21 rootL2_10017635 3300003322 Bacteria 34650
22 JGI25160J50197_1000516 3300003354 Bacteria 22788
23 JGI25161J50226_1000371 3300003374 Bacteria 22788
24 Ga0055524_1005482 3300003775 Bacteria 5657
25 Ga0058692_1000335 3300003856 Bacteria 23347
26 Ga0058692_1001924 3300003856 Bacteria 7247
27 Ga0055543_1000493 3300004625 Bacteria 22826
28 Ga0065165_1001634 3300005262 Bacteria 22826
29 Ga0068856_100002453 3300005614 Bacteria 19080
30 Ga0075368_10004304 3300006042 Bacteria 4814
31 Ga0075363_100000269 3300006048 Bacteria 14977
32 Ga0075364_10013443 3300006051 Bacteria 5033
33 Ga0075364_10045815 3300006051 Bacteria 2846
34 Ga0075362_10000128 3300006177 Bacteria 20952
35 Ga0075367_10013804 3300006178 Bacteria 4357
36 Ga0075367_10014326 3300006178 Bacteria 4291
37 Ga0075369_10008845 3300006186 Bacteria 3890
38 Ga0075366_10002669 3300006195 Bacteria 9196
39 Ga0075370_10047492 3300006353 Bacteria 2431
40 Ga0099826_10000059 3300006948 Bacteria 63493
41 Ga0099826_10021763 3300006948 Bacteria 4802
42 Ga0105243_10011737 3300009148 Bacteria 6624
43 Ga0123341_1014936 3300009765 Bacteria 6936
44 Ga0123342_1020513 3300009766 Bacteria 4815
45 Ga0105246_10058948 3300011119 Bacteria 2662
46 Ga0157373_10006449 3300013100 Bacteria 8763
47 Ga0157371_10000002 3300013102 Bacteria 665040
48 Ga0157370_10001455 3300013104 Bacteria 29311
49 Ga0182007_10005511 3300015262 Bacteria 5549
50 Ga0209435_100033 3300025206 Bacteria 150395
51 Ga0209760_100050 3300025207 Bacteria 106788
52 Ga0207427_100003 3300025231 Bacteria 1035004
53 Ga0209437_100002 3300025233 Bacteria 1574801
54 Ga0209437_100067 3300025233 Bacteria 317685
55 Ga0207425_1000947 3300025245 Bacteria 13768
56 Ga0209646_1000116 3300025246 Bacteria 150395
57 Ga0209646_1002092 3300025246 Bacteria 4674
58 Ga0209026_1000103 3300025250 Bacteria 152843
59 Ga0209677_100327 3300025253 Bacteria 30487
60 Ga0209759_1000105 3300025256 Bacteria 150395
61 Ga0209129_1000485 3300025258 Bacteria 29021
62 Ga0209129_1008203 3300025258 Bacteria 2946
63 Ga0209233_1000004 3300025261 Bacteria 1574798
64 Ga0209233_1000088 3300025261 Bacteria 317980
65 Ga0209233_1000250 3300025261 Bacteria 85129
66 Ga0209673_1002633 3300025273 Bacteria 12038
67 Ga0209130_1000957 3300025284 Bacteria 22840
68 Ga0209025_1000255 3300025294 Bacteria 125764
69 Ga0209025_1003642 3300025294 Bacteria 14304
70 Ga0209025_1008337 3300025294 Bacteria 7471
71 Ga0209256_1002022 3300025299 Bacteria 18074
72 Ga0207426_1001210 3300025302 Bacteria 22840
73 Ga0207702_10004345 3300026078 Bacteria 12637
74 Ga0209371_1000003 3300027312 Bacteria 1122971
75 Ga0209371_1001456 3300027312 Bacteria 16029
76 Ga0209371_1001534 3300027312 Bacteria 15290
77 Ga0209371_1006163 3300027312 Bacteria 4527
78 Ga0209282_1000502 3300027666 Bacteria 19013
79 Ga0209282_1016846 3300027666 Bacteria 4649
80 Ga0209813_10002024 3300027866 Bacteria 4595
81 Ga0268266_10014308 3300028379 Bacteria 6824
82 Ga0307515_10271431 3300028794 Bacteria 1416
83 Ga0268256_1000004 3300030500 Bacteria 1122967
84 Ga0268256_1001237 3300030500 Bacteria 16029
85 Ga0268256_1004414 3300030500 Bacteria 5843
86 Ga0268256_1009031 3300030500 Bacteria 3355
87 Ga0316181_1185167 3300030744 Bacteria 3153
88 Ga0439465_0024513 3300041413 Bacteria 1901
89 Ga0450900_000463 3300042136 Bacteria 3204
90 Ga0495610_0037941 3300046512 Bacteria 2448
91 Ga0495643_0015484 3300046522 Bacteria 4505
92 Ga0495633_0048999 3300046558 Bacteria 1994
93 Ga0495588_0001008 3300046674 Bacteria 12268
94 Ga0495681_0006093 3300047470 Bacteria 7969
95 Ga0495626_0070741 3300048091 Bacteria 1569
96 Ga0496102_0051537 3300048905 Bacteria 3749
97 Ga0496106_0004051 3300048909 Bacteria 10937
98 Ga0496116_0041754 3300048919 Bacteria 3144
99 Ga0496117_0000052 3300048920 Bacteria 280463
100 Ga0496117_0040572 3300048920 Bacteria 3421
101 Ga0496117_0069045 3300048920 Bacteria 2382
102 Ga0496117_0076713 3300048920 Bacteria 2214
103 Ga0496118_0000432 3300048921 Bacteria 69605
104 Ga0496119_0006523 3300048922 Bacteria 10769
105 Ga0496119_0034483 3300048922 Bacteria 3332
106 Ga0496120_0000019 3300048923 Bacteria 260115
107 Ga0496120_0077614 3300048923 Bacteria 1807
108 Ga0496121_0009817 3300048924 Bacteria 10932
109 Ga0496122_0000053 3300048925 Bacteria 260120
110 Ga0496122_0012896 3300048925 Bacteria 8254
111 Ga0496122_0013967 3300048925 Bacteria 7806
112 Ga0496123_0000038 3300048926 Bacteria 260120
113 Ga0496123_0006764 3300048926 Bacteria 11020
114 Ga0496123_0011676 3300048926 Bacteria 7579
115 Ga0496124_0011846 3300048927 Bacteria 8682
116 Ga0496124_0015300 3300048927 Bacteria 7363
117 Ga0496124_0027936 3300048927 Bacteria 5053
118 Ga0496125_0022931 3300048928 Bacteria 5783
119 Ga0496125_0050215 3300048928 Bacteria 3455
120 Ga0496125_0055240 3300048928 Bacteria 3237
121 Ga0496126_0000271 3300048929 Bacteria 110289
122 Ga0496126_0153260 3300048929 Bacteria 1974
123 nmdc:mga03683_132_c1 3300050489 Bacteria 24967
124 nmdc:mga03n38_738_c1 3300050490 Bacteria 8641
125 nmdc:mga00v17_11_c1 3300050491 Bacteria 135478
126 nmdc:mga0yw44_96_c1 3300050492 Bacteria 30976
127 nmdc:mga06z11_16352_c1 3300050494 Bacteria 3339
128 nmdc:mga06z11_86241_c1 3300050494 Bacteria 1696
129 nmdc:mga04h51_34043_c1 3300050495 Bacteria 1626
130 nmdc:mga07m45_21990_c1 3300050496 Bacteria 3480
131 nmdc:mga0sz30_485_c1 3300050516 Bacteria 14930
132 Ga0500651_0036708 3300053093 Bacteria 3088
133 Ga0500560_002851 3300053107 Bacteria 3399
134 Ga0500607_071727 3300053121 Bacteria 1787
135 Ga0500561_0000033 3300053137 Bacteria 28489
136 Ga0500568_0000513 3300053139 Bacteria 28533
137 Ga0500573_0000099 3300053140 Bacteria 37668
138 Ga0500622_0000316 3300053156 Bacteria 48869
139 Ga0500624_000861 3300053157 Bacteria 6698
140 Ga0500634_0000506 3300053161 Bacteria 12676

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300002704 JGI25155J39150_1000021 JGI25155J39150_100002185 286
2 3300002705 JGI25156J39149_1000022 JGI25156J39149_100002284 286
3 3300002738 JGI25154J39366_1000048 JGI25154J39366_100004831 286
4 3300002741 JGI25157J39369_1000025 JGI25157J39369_100002556 286
5 3300025206 Ga0209435_100033 Ga0209435_10003352 286
6 3300025246 Ga0209646_1000116 Ga0209646_100011679 286
7 3300025250 Ga0209026_1000103 Ga0209026_100010352 286
8 3300025256 Ga0209759_1000105 Ga0209759_100010579 286
9 3300002737 JGI25162J39368_1000004 JGI25162J39368_1000004153 302
10 3300002771 JGI25163J39215_1000089 JGI25163J39215_100008914 302
11 3300002772 JGI25164J39214_1000034 JGI25164J39214_100003420 302
12 3300003214 JGI25165J46597_1000011 JGI25165J46597_1000011153 302
13 3300025207 Ga0209760_100050 Ga0209760_10005067 302
14 3300025231 Ga0207427_100003 Ga0207427_100003152 302
15 3300025233 Ga0209437_100002 Ga0209437_100002860 302
16 3300025261 Ga0209233_1000004 Ga0209233_1000004564 302
17 3300053121 Ga0500607_071727 Ga0500607_071727_683_1762 305
18 3300053161 Ga0500634_0000506 Ga0500634_0000506_10662_11741 305
19 3300025258 Ga0209129_1000485 Ga0209129_100048521 308
20 3300048929 Ga0496126_0153260 Ga0496126_0153260_442_1506 308
21 3300028794 Ga0307515_10271431 Ga0307515_102714311 313
22 3300025273 Ga0209673_1002633 Ga0209673_10026337 314
23 3300027312 Ga0209371_1001456 Ga0209371_10014566 318
24 3300030500 Ga0268256_1001237 Ga0268256_10012376 318
25 iso_pu_bacteria 2582581308 2585280917 318
26 iso_pu_bacteria 2585427527 2585530621 318
27 iso_pu_bacteria 2585427530 2585554799 318
28 iso_pu_bacteria 2818991453 2819641077 318
29 3300003775 Ga0055524_1005482 Ga0055524_10054822 320
30 3300025294 Ga0209025_1003642 Ga0209025_100364213 320
31 3300025299 Ga0209256_1002022 Ga0209256_10020229 320
32 3300002773 JGI25152J39213_1002868 JGI25152J39213_10028684 321
33 iso_pu_bacteria 2513237084 2513568892 323
34 iso_pu_bacteria 2513237138 2513870403 323
35 iso_pu_bacteria 2513237146 2513929382 323
36 iso_pu_bacteria 2513237159 2514002217 323
37 iso_pu_bacteria 2513237162 2514024627 323
38 iso_pu_bacteria 2515154113 2515637727 323
39 iso_pu_bacteria 2515154114 2515642827 323
40 iso_pu_bacteria 2515154116 2515658656 323
41 iso_pu_bacteria 2582581866 2585397081 323
42 iso_pu_bacteria 2582581867 2585403294 323
43 iso_pu_bacteria 2585427590 2585824098 323
44 iso_pu_bacteria 2599185170 2599419375 323
45 iso_pu_bacteria 2599185352 2600196324 323
46 iso_pu_bacteria 2643221723 2644677303 323
47 iso_pu_bacteria 2767802442 2770195875 323
48 iso_pu_bacteria 2775506902 2776269418 323
49 iso_pu_bacteria 2775506904 2776282348 323
50 iso_pu_bacteria 2838035591 2838040092 323
51 iso_pu_bacteria 2838680041 2838681071 323
52 iso_pu_bacteria 2838694306 2838694896 323
53 iso_pu_bacteria 2838707686 2838708272 323
54 iso_pu_bacteria 2840764183 2840767121 323
55 iso_pu_bacteria 2842077413 2842080494 323
56 iso_pu_bacteria 2842118031 2842121113 323
57 iso_pu_bacteria 2842237096 2842237684 323
58 iso_pu_bacteria 2842291075 2842294153 323
59 iso_pu_bacteria 2842370503 2842371534 323
60 iso_pu_bacteria 2842377471 2842380550 323
61 iso_pu_bacteria 2842384541 2842387621 323
62 iso_pu_bacteria 2842521101 2842525393 323
63 iso_pu_bacteria 2896384573 2896387271 323
64 iso_pu_bacteria 2935894831 2935895418 323
65 iso_pu_bacteria 2936367885 2936368383 323
66 iso_pu_bacteria 2958064165 2958066558 323
67 iso_pu_bacteria 2977523885 2977528258 323
68 iso_pu_bacteria 8005376324 8005376871 323
69 iso_pu_bacteria 8005563573 8005570184 323
70 iso_pu_bacteria 2854911287 2854915954 324
71 3300025294 Ga0209025_1000255 Ga0209025_1000255117 325
72 3300053140 Ga0500573_0000099 Ga0500573_0000099_19022_20104 325
73 iso_pu_bacteria 2582581315 2585324447 325
74 iso_pu_bacteria 2585427633 2585992732 325
75 iso_pu_bacteria 2615840626 2616310700 325
76 iso_pu_bacteria 2791355123 2792750228 325
77 iso_pu_bacteria 2882632389 2882636828 325
78 iso_pu_bacteria 641522639 641641389 325
79 3300048905 Ga0496102_0051537 Ga0496102_0051537_2489_3550 326
80 iso_pu_bacteria 2513237144 2513911797 326
81 iso_pu_bacteria 2523231067 2523467631 326
82 iso_pu_bacteria 2537561587 2537872930 326
83 iso_pu_bacteria 2554235003 2554245156 326
84 iso_pu_bacteria 2558860242 2559297013 326
85 iso_pu_bacteria 2585427590 2585823821 326
86 iso_pu_bacteria 2599185210 2599605073 326
87 iso_pu_bacteria 2600255279 2601611140 326
88 iso_pu_bacteria 2600255308 2601747913 326
89 iso_pu_bacteria 2643221582 2643916879 326
90 iso_pu_bacteria 2643221693 2644521256 326
91 iso_pu_bacteria 2738543031 2739349096 326
92 iso_pu_bacteria 2808606387 2808989026 326
93 iso_pu_bacteria 2818991439 2819557153 326
94 iso_pu_bacteria 2838675328 2838678309 326
95 iso_pu_bacteria 2838714209 2838716785 326
96 iso_pu_bacteria 2838719591 2838722605 326
97 iso_pu_bacteria 2838724970 2838727534 326
98 iso_pu_bacteria 2838736955 2838742487 326
99 iso_pu_bacteria 2841840854 2841846438 326
100 iso_pu_bacteria 2841846520 2841849140 326
101 iso_pu_bacteria 2841859092 2841861799 326
102 iso_pu_bacteria 2842124991 2842128111 326
103 iso_pu_bacteria 2842130223 2842133202 326
104 iso_pu_bacteria 2842140634 2842146166 326
105 iso_pu_bacteria 2842152218 2842155196 326
106 iso_pu_bacteria 2842170452 2842173695 326
107 iso_pu_bacteria 2842175837 2842178817 326
108 iso_pu_bacteria 2842187318 2842189892 326
109 iso_pu_bacteria 2842211629 2842214206 326
110 iso_pu_bacteria 2842224351 2842226925 326
111 iso_pu_bacteria 2842509118 2842512589 326
112 iso_pu_bacteria 2842515876 2842517935 326
113 iso_pu_bacteria 2854896431 2854896802 326
114 iso_pu_bacteria 2899792073 2899792889 326
115 iso_pu_bacteria 2899845264 2899845386 326
116 iso_pu_bacteria 2919114240 2919116976 326
117 iso_pu_bacteria 2926754445 2926758489 326
118 iso_pu_bacteria 2926760298 2926763979 326
119 iso_pu_bacteria 2933006813 2933009425 326
120 iso_pu_bacteria 2933011516 2933013564 326
121 iso_pu_bacteria 2933594066 2933598183 326
122 iso_pu_bacteria 2979089926 2979090923 326
123 iso_pu_bacteria 2979095461 2979096448 326
124 iso_pu_bacteria 2979100975 2979102184 326
125 iso_pu_bacteria 2984509177 2984509867 326
126 iso_pu_bacteria 2984518228 2984519436 326
127 iso_pu_bacteria 2984537506 2984538207 326
128 iso_pu_bacteria 2984601300 2984604959 326
129 iso_pu_bacteria 643348564 643598506 326
130 iso_pu_bacteria 650716007 650843439 326
131 iso_pu_bacteria 8003570095 8003573034 326
132 iso_pu_bacteria 8054558443 8054563389 326
133 3300002987 JGI25159J45721_1002372 JGI25159J45721_10023728 327
134 3300003354 JGI25160J50197_1000516 JGI25160J50197_100051615 327
135 3300003374 JGI25161J50226_1000371 JGI25161J50226_10003716 327
136 3300004625 Ga0055543_1000493 Ga0055543_100049315 327
137 3300005262 Ga0065165_1001634 Ga0065165_100163415 327
138 3300006948 Ga0099826_10000059 Ga0099826_1000005933 327
139 3300006948 Ga0099826_10021763 Ga0099826_100217635 327
140 3300025284 Ga0209130_1000957 Ga0209130_10009577 327
141 3300025302 Ga0207426_1001210 Ga0207426_10012107 327
142 3300027666 Ga0209282_1000502 Ga0209282_10005026 327
143 3300027666 Ga0209282_1016846 Ga0209282_10168464 327
144 3300048920 Ga0496117_0076713 Ga0496117_0076713_293_1369 327
145 3300048922 Ga0496119_0034483 Ga0496119_0034483_1172_2248 327
146 3300048928 Ga0496125_0055240 Ga0496125_0055240_484_1560 327
147 iso_pu_bacteria 2510917030 2511197415 327
148 iso_pu_bacteria 2513237144 2513912061 327
149 iso_pu_bacteria 2582581298 2585226680 327
150 iso_pu_bacteria 2582581316 2585335581 327
151 iso_pu_bacteria 2585427529 2585550095 327
152 iso_pu_bacteria 2615840698 2616555560 327
153 iso_pu_bacteria 2617270742 2617384157 327
154 iso_pu_bacteria 2667528174 2671114368 327
155 iso_pu_bacteria 2818991448 2819610209 327
156 iso_pu_bacteria 2838029111 2838030517 327
157 iso_pu_bacteria 2838661181 2838663872 327
158 iso_pu_bacteria 2842475841 2842477202 327
159 iso_pu_bacteria 2842502639 2842503999 327
160 iso_pu_bacteria 2852387548 2852395108 327
161 iso_pu_bacteria 2919100787 2919107146 327
162 iso_pu_bacteria 2919408235 2919412302 327
163 iso_pu_bacteria 2933016740 2933017757 327
164 iso_pu_bacteria 2996887358 2996893162 327
165 iso_pu_bacteria 3005416602 3005416613 327
166 iso_pu_bacteria 3005445848 3005447781 327
167 iso_pu_bacteria 8005258706 8005260886 327
168 iso_pu_bacteria 8005314921 8005320744 327
169 iso_pu_bacteria 8005321885 8005327689 327
170 iso_pu_bacteria 8005484373 8005487652 327
171 iso_pu_bacteria 8005645114 8005647982 327
172 iso_pu_bacteria 8005682033 8005686057 327
173 iso_pu_bacteria 8046767195 8046770581 327
174 3300006042 Ga0075368_10004304 Ga0075368_100043042 328
175 3300006048 Ga0075363_100000269 Ga0075363_1000002698 328
176 3300006051 Ga0075364_10013443 Ga0075364_100134433 328
177 3300006051 Ga0075364_10045815 Ga0075364_100458153 328
178 3300006177 Ga0075362_10000128 Ga0075362_1000012822 328
179 3300006178 Ga0075367_10013804 Ga0075367_100138042 328
180 3300006178 Ga0075367_10014326 Ga0075367_100143263 328
181 3300006186 Ga0075369_10008845 Ga0075369_100088455 328
182 3300006195 Ga0075366_10002669 Ga0075366_100026696 328
183 3300006353 Ga0075370_10047492 Ga0075370_100474923 328
184 3300009148 Ga0105243_10011737 Ga0105243_100117373 328
185 3300011119 Ga0105246_10058948 Ga0105246_100589482 328
186 3300013100 Ga0157373_10006449 Ga0157373_100064494 328
187 3300013102 Ga0157371_10000002 Ga0157371_1000000233 328
188 3300013104 Ga0157370_10001455 Ga0157370_1000145510 328
189 3300027312 Ga0209371_1001534 Ga0209371_100153411 328
190 3300027866 Ga0209813_10002024 Ga0209813_100020243 328
191 3300028379 Ga0268266_10014308 Ga0268266_100143088 328
192 3300030500 Ga0268256_1009031 Ga0268256_10090311 328
193 3300030744 Ga0316181_1185167 Ga0316181_11851672 328
194 3300046558 Ga0495633_0048999 Ga0495633_0048999_856_1932 328
195 3300046674 Ga0495588_0001008 Ga0495588_0001008_3950_5026 328
196 3300047470 Ga0495681_0006093 Ga0495681_0006093_5736_6812 328
197 3300048920 Ga0496117_0000052 Ga0496117_0000052_126059_127135 328
198 3300048921 Ga0496118_0000432 Ga0496118_0000432_22133_23209 328
199 3300048923 Ga0496120_0000019 Ga0496120_0000019_126059_127135 328
200 3300048925 Ga0496122_0000053 Ga0496122_0000053_126059_127135 328
201 3300048926 Ga0496123_0000038 Ga0496123_0000038_126059_127135 328
202 3300048927 Ga0496124_0011846 Ga0496124_0011846_6667_7743 328
203 3300048928 Ga0496125_0050215 Ga0496125_0050215_442_1518 328
204 3300050489 nmdc:mga03683_132_c1 nmdc:mga03683_132_c1_8908_9984 328
205 3300050490 nmdc:mga03n38_738_c1 nmdc:mga03n38_738_c1_4435_5511 328
206 3300050491 nmdc:mga00v17_11_c1 nmdc:mga00v17_11_c1_12017_13093 328
207 3300050492 nmdc:mga0yw44_96_c1 nmdc:mga0yw44_96_c1_10163_11239 328
208 3300050494 nmdc:mga06z11_16352_c1 nmdc:mga06z11_16352_c1_2040_3116 328
209 3300050494 nmdc:mga06z11_86241_c1 nmdc:mga06z11_86241_c1_442_1518 328
210 3300050495 nmdc:mga04h51_34043_c1 nmdc:mga04h51_34043_c1_445_1521 328
211 3300050496 nmdc:mga07m45_21990_c1 nmdc:mga07m45_21990_c1_292_1368 328
212 3300050516 nmdc:mga0sz30_485_c1 nmdc:mga0sz30_485_c1_13712_14788 328
213 3300053107 Ga0500560_002851 Ga0500560_002851_1631_2707 328
214 3300053137 Ga0500561_0000033 Ga0500561_0000033_7916_8992 328
215 3300053157 Ga0500624_000861 Ga0500624_000861_4440_5516 328
216 iso_pu_bacteria 2920760137 2920766910 328
217 iso_pu_bacteria 3003665799 3003666328 328
218 3300003856 Ga0058692_1000335 Ga0058692_100033517 329
219 3300003856 Ga0058692_1001924 Ga0058692_10019243 329
220 3300027312 Ga0209371_1000003 Ga0209371_1000003830 329
221 3300030500 Ga0268256_1000004 Ga0268256_1000004220 329
222 3300003316 rootH1_10021286 rootH1_100212863 330
223 3300003320 rootH2_10001973 rootH2_1000197316 330
224 3300003320 rootH2_10092073 rootH2_100920732 330
225 3300003322 rootL2_10017635 rootL2_1001763530 330
226 3300027312 Ga0209371_1006163 Ga0209371_10061634 330
227 3300030500 Ga0268256_1004414 Ga0268256_10044143 330
228 3300042136 Ga0450900_000463 Ga0450900_000463_1993_3099 330
229 iso_pu_bacteria 2600254931 2600363010 330
230 iso_pu_bacteria 2791355253 2793281278 330
231 3300001979 JGI24740J21852_10000044 JGI24740J21852_1000004422 331
232 3300002737 JGI25162J39368_1000074 JGI25162J39368_100007483 331
233 3300002774 JGI25150J39212_1001849 JGI25150J39212_10018494 331
234 3300002774 JGI25150J39212_1006037 JGI25150J39212_10060372 331
235 3300003187 JGI25151J46595_10019412 JGI25151J46595_100194121 331
236 3300003214 JGI25165J46597_1000201 JGI25165J46597_100020134 331
237 3300003214 JGI25165J46597_1002292 JGI25165J46597_10022924 331
238 3300005614 Ga0068856_100002453 Ga0068856_10000245311 331
239 3300009765 Ga0123341_1014936 Ga0123341_10149363 331
240 3300009766 Ga0123342_1020513 Ga0123342_10205133 331
241 3300015262 Ga0182007_10005511 Ga0182007_100055112 331
242 3300025233 Ga0209437_100067 Ga0209437_10006739 331
243 3300025245 Ga0207425_1000947 Ga0207425_100094712 331
244 3300025246 Ga0209646_1002092 Ga0209646_10020922 331
245 3300025253 Ga0209677_100327 Ga0209677_10032721 331
246 3300025258 Ga0209129_1008203 Ga0209129_10082032 331
247 3300025261 Ga0209233_1000088 Ga0209233_100008839 331
248 3300025261 Ga0209233_1000250 Ga0209233_100025046 331
249 3300025294 Ga0209025_1008337 Ga0209025_10083373 331
250 3300026078 Ga0207702_10004345 Ga0207702_100043453 331
251 3300041413 Ga0439465_0024513 Ga0439465_0024513_45_1121 331
252 3300046512 Ga0495610_0037941 Ga0495610_0037941_136_1212 331
253 3300046522 Ga0495643_0015484 Ga0495643_0015484_1076_2152 331
254 3300048091 Ga0495626_0070741 Ga0495626_0070741_179_1255 331
255 3300048909 Ga0496106_0004051 Ga0496106_0004051_8384_9460 331
256 3300048919 Ga0496116_0041754 Ga0496116_0041754_412_1488 331
257 3300048920 Ga0496117_0040572 Ga0496117_0040572_521_1597 331
258 3300048920 Ga0496117_0069045 Ga0496117_0069045_137_1213 331
259 3300048922 Ga0496119_0006523 Ga0496119_0006523_923_1999 331
260 3300048923 Ga0496120_0077614 Ga0496120_0077614_201_1277 331
261 3300048924 Ga0496121_0009817 Ga0496121_0009817_6821_7897 331
262 3300048925 Ga0496122_0012896 Ga0496122_0012896_4010_5086 331
263 3300048925 Ga0496122_0013967 Ga0496122_0013967_1015_2091 331
264 3300048926 Ga0496123_0006764 Ga0496123_0006764_540_1616 331
265 3300048926 Ga0496123_0011676 Ga0496123_0011676_3544_4620 331
266 3300048927 Ga0496124_0015300 Ga0496124_0015300_3363_4439 331
267 3300048927 Ga0496124_0027936 Ga0496124_0027936_1925_3001 331
268 3300048928 Ga0496125_0022931 Ga0496125_0022931_1779_2855 331
269 3300048929 Ga0496126_0000271 Ga0496126_0000271_21433_22509 331
270 3300053093 Ga0500651_0036708 Ga0500651_0036708_234_1310 331
271 3300053139 Ga0500568_0000513 Ga0500568_0000513_26333_27409 331
272 3300053156 Ga0500622_0000316 Ga0500622_0000316_2955_4031 331
273 iso_pu_bacteria 2545555834 2545676424 331
274 iso_pu_bacteria 2643221653 2644300544 331
275 iso_pu_bacteria 2643221719 2644658885 331
276 iso_pu_bacteria 2818991272 2819243509 331
277 iso_pu_bacteria 2894817345 2894821735 331
278 iso_pu_bacteria 2989776772 2989781099 331
279 iso_pu_bacteria 3003930520 3003935528 331
280 iso_pu_bacteria 8005246636 8005251419 331
281 iso_pu_bacteria 8018150411 8018150511 331

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13533

Biotin_lipoyl_2

Biotin-lipoyl like

107

158

0.91

PF16576

HlyD_D23

Barrel-sandwich domain of CusB or HlyD membrane-fusion

94

317

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vej-assembly1.cif.gz_P triabc transporter from pseudomonas aeruginosa 0.8993 255 324
4qsh-assembly1.cif.gz_B crystal structure of l. monocytogenes pyruvate carboxylase in complex with cyclic-di-amp 0.8958 60 172
4qsh-assembly1.cif.gz_D crystal structure of l. monocytogenes pyruvate carboxylase in complex with cyclic-di-amp 0.8955 60 172
4qsh-assembly1.cif.gz_C crystal structure of l. monocytogenes pyruvate carboxylase in complex with cyclic-di-amp 0.8955 60 172
4qsh-assembly1.cif.gz_A crystal structure of l. monocytogenes pyruvate carboxylase in complex with cyclic-di-amp 0.8948 60 172
ID Description Score Start End Superfamily
4l8jA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9586 57 173 2.40.50.100
4tkoB02 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9409 57 170 2.40.50.100
4kkuC03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9177 60 168 2.40.50.100
4l8jA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.908 57 173 2.40.50.100
4kkuA01 Mainly Beta;Beta Barrel;conserved putative lor/sdh protein from methanococcus maripaludis s2 fold; 0.9063 256 325 2.40.420.20
ID Description Score Start End GO Terms
AF-A0A530BLY6-F1-model_v4 Efflux transporter periplasmic adaptor subunit 0.9525 255 328 GO:0015562
GO:1990281
AF-A0A1S2VCJ8-F1-model_v4 RND efflux pump membrane fusion protein barrel-sandwich domain-containing protein 0.7941 40 324 GO:0015562
GO:1990281
AF-A0A849IIJ0-F1-model_v4 Efflux RND transporter periplasmic adaptor subunit 0.7618 29 326 GO:0015562
GO:1990281
AF-A0A5R9J7M5-F1-model_v4 Efflux RND transporter periplasmic adaptor subunit 0.7604 25 325 GO:0015562
GO:1990281
AF-A0A498DDC4-F1-model_v4 HlyD family efflux transporter periplasmic adaptor subunit 0.7542 43 251 GO:0030313

Feature Viewer

pLDDT pTM Quality
79.29 0.6 Medium
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Predicted Structure (AlphaFold2)

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