F379381

General Info

Members Datasets Scaffolds Average Seq Length
273 209 183 488

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221637|2644206965
Length 551
Sequence RADMVYLMTSRSGNSTLVPFVRSTAAPTADINHFRNKSQHSVAHQNCVRLSKSTHDAPSARHTPAAARPLNVLSVSSELFPLIKTGGLADVTGALPQALEGHGVATVSLIPAYSQISRSFTGLEEVARLRLLDEQAIVLRGNHNGAQLLLLDCPAFFERPGGPYLDAEGRDHDDNWKRFAALSLAAAKVAAGEIPDWTPDIVHTHDWQAALTPAYMKDLMVETPTVLTIHNLAFQGQFPARIFPALGLSPHHFDTGCMEYYGDISFLKAGIALSDIVTTVSPTYAREILTPELGMGMNGFLSTRRDSLRGIINGIDENLWNPTTDPLIPAKYDIATIEKRHTNRTAVEDRFGLVKDDGAILSVISRLTWQKGLDLLEPIIPGIVDRGAKLVVYGQGDPAMIAPLAERARQYAGRVVLSIDFNEADAHLLHSGSDMVLQPSRFEPCGLTQLYALRYGAIPIVARTGGLAETIIDANEAAMDAKVATGFQFQPGSVEDFYHAVDRALTAFGHPSFWRQLQVQAMKANFSWQRSARRYAALYRSLLPTEARQEL

Samples

Sample ID Description Type Environment
1 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
2 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
3 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
4 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
5 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
6 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
7 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
8 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
9 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
10 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
11 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
12 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
13 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
14 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
15 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
16 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
17 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
18 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
19 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
20 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
21 2643221582 Rhizobium sp. Root651 Isolate Unclassified
22 2643221607 Rhizobium sp. Root73 Isolate Unclassified
23 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
24 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
25 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
26 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
27 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
28 2643221693 Rhizobium sp. Root491 Isolate Unclassified
29 2643221718 Rhizobium sp. Root268 Isolate Unclassified
30 2643221719 Rhizobium sp. Root274 Isolate Unclassified
31 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
32 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
33 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
34 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
35 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
36 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
37 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
38 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
39 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
40 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
41 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
42 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
43 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
44 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
45 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
46 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
47 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
48 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
49 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
50 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
51 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
52 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
53 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
54 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
55 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
56 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
57 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
58 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
59 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
60 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
61 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
62 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
63 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
64 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
65 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
66 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
67 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
68 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
69 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
70 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
71 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
72 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
73 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
74 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
75 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
76 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
77 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
78 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
79 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
80 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
81 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
82 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
83 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
84 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
85 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
86 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
87 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
88 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
89 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
90 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
91 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
92 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
93 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
94 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
95 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
96 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
97 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
98 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
99 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
100 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
101 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
102 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
103 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
104 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
105 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
106 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
107 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
108 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
109 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
110 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
111 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
112 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
113 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
114 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
115 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
116 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
117 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
118 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
119 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
120 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
121 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
122 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
123 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
124 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
125 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
126 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
127 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
128 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
129 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
130 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
131 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
132 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
133 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
134 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
135 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
136 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
137 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
138 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
139 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
140 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
141 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
142 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
143 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
144 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
145 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
146 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
147 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
148 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
149 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
150 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
151 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
152 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
153 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
154 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
155 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
156 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
157 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
158 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
159 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
160 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
161 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
162 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
163 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
164 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
165 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
166 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
167 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
168 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
169 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
170 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
171 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
172 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
173 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
174 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
175 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
176 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
177 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
178 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
179 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
180 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
181 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
182 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
183 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
184 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
185 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
186 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
187 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
188 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
189 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
190 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
191 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
192 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
193 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
194 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
195 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
196 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
197 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
198 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
199 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
200 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
201 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
202 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
203 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
204 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
205 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
206 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
207 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
208 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
209 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 67.03
Metatranscriptomes 0
Isolates 32.97

Biome Distribution

Category Percentage (%)
Aerial Root 1.47
Bulb 0
Endosphere 17.58
Nodule 10.62
Rhizoplane 5.49
Rhizosphere 43.22
Stem 0
Stem Tuber 0
Unclassified 21.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24752J21851_1001310 3300001976 Bacteria 3368
2 JGI25151J46595_10002604 3300003187 Bacteria 10650
3 Ga0055536_1011182 3300003781 Bacteria 3477
4 Ga0055540_1012531 3300003792 Bacteria 2653
5 Ga0055531_10002301 3300003794 Bacteria 12906
6 Ga0065165_1004491 3300005262 Bacteria 8584
7 Ga0070670_100020977 3300005331 Bacteria 5618
8 Ga0070666_10000090 3300005335 Bacteria 64025
9 Ga0070666_10019000 3300005335 Bacteria 4429
10 Ga0070668_100073993 3300005347 Bacteria 2657
11 Ga0070669_100000024 3300005353 Bacteria 173107
12 Ga0070669_100001204 3300005353 Bacteria 18831
13 Ga0070671_100000006 3300005355 Bacteria 250635
14 Ga0070671_100000289 3300005355 Bacteria 34220
15 Ga0070708_100048346 3300005445 Bacteria 3760
16 Ga0070686_100060093 3300005544 Bacteria 2451
17 Ga0070686_100087638 3300005544 Bacteria 2075
18 Ga0070665_100053583 3300005548 Bacteria 4046
19 Ga0068854_100068327 3300005578 Bacteria 2591
20 Ga0068859_100000858 3300005617 Bacteria 30940
21 Ga0068859_100014380 3300005617 Bacteria 7939
22 Ga0068859_100056730 3300005617 Bacteria 3943
23 Ga0068864_100113621 3300005618 Bacteria 2414
24 Ga0068864_100150802 3300005618 Bacteria 2106
25 Ga0068861_100000480 3300005719 Bacteria 23233
26 Ga0068861_100023779 3300005719 Bacteria 4424
27 Ga0068863_100085020 3300005841 Bacteria 2998
28 Ga0068858_100000967 3300005842 Bacteria 29708
29 Ga0068860_100041968 3300005843 Bacteria 4371
30 Ga0068860_100051543 3300005843 Bacteria 3916
31 Ga0068862_100000208 3300005844 Bacteria 65480
32 Ga0068862_100000307 3300005844 Bacteria 53788
33 Ga0068862_100171615 3300005844 Bacteria 1942
34 Ga0075368_10000971 3300006042 Bacteria 8940
35 Ga0075363_100003056 3300006048 Bacteria 7015
36 Ga0075363_100008379 3300006048 Bacteria 4811
37 Ga0075362_10001832 3300006177 Bacteria 6945
38 Ga0075367_10000925 3300006178 Bacteria 11881
39 Ga0075367_10034261 3300006178 Bacteria 2932
40 Ga0097620_100000858 3300006931 Bacteria 30940
41 Ga0097620_100014382 3300006931 Bacteria 7939
42 Ga0097620_100056731 3300006931 Bacteria 3943
43 Ga0079104_1000063 3300006946 Bacteria 159519
44 Ga0099826_10001501 3300006948 Bacteria 14062
45 Ga0099826_10012183 3300006948 Bacteria 6476
46 Ga0105240_10000215 3300009093 Bacteria 115967
47 Ga0105247_10014203 3300009101 Bacteria 4778
48 Ga0105247_10016973 3300009101 Bacteria 4367
49 Ga0105248_10001161 3300009177 Bacteria 29393
50 Ga0105248_10024724 3300009177 Bacteria 6680
51 Ga0105237_10000560 3300009545 Bacteria 52008
52 Ga0105249_10000184 3300009553 Bacteria 71944
53 Ga0105249_10068243 3300009553 Bacteria 3279
54 Ga0105239_10000025 3300010375 Bacteria 254049
55 Ga0157373_10001083 3300013100 Bacteria 20976
56 Ga0157371_10000219 3300013102 Bacteria 83847
57 Ga0157370_10000037 3300013104 Bacteria 136803
58 Ga0163162_10058606 3300013306 Bacteria 3880
59 Ga0163163_10108258 3300014325 Bacteria 2806
60 Ga0157380_10000134 3300014326 Bacteria 41479
61 Ga0157379_10009810 3300014968 Bacteria 8344
62 Ga0209676_1006777 3300025292 Bacteria 5564
63 Ga0209025_1000052 3300025294 Bacteria 324648
64 Ga0209025_1000277 3300025294 Bacteria 117930
65 Ga0209758_1000105 3300025297 Bacteria 221415
66 Ga0209050_1011493 3300025298 Bacteria 4188
67 Ga0209051_1002256 3300025303 Bacteria 14155
68 Ga0209257_1005869 3300025304 Bacteria 8296
69 Ga0207697_10000273 3300025315 Bacteria 28435
70 Ga0207710_10001144 3300025900 Bacteria 13507
71 Ga0207680_10001008 3300025903 Bacteria 13288
72 Ga0207695_10000347 3300025913 Bacteria 107013
73 Ga0207671_10000952 3300025914 Bacteria 35982
74 Ga0207681_10000004 3300025923 Bacteria 559005
75 Ga0207681_10021033 3300025923 Bacteria 4142
76 Ga0207644_10000009 3300025931 Bacteria 251643
77 Ga0207644_10000011 3300025931 Bacteria 223950
78 Ga0207711_10000788 3300025941 Bacteria 31143
79 Ga0207711_10085568 3300025941 Bacteria 2763
80 Ga0207712_10000059 3300025961 Bacteria 137849
81 Ga0207668_10001335 3300025972 Bacteria 14656
82 Ga0207668_10049577 3300025972 Bacteria 2888
83 Ga0207668_10097516 3300025972 Bacteria 2176
84 Ga0207640_10006543 3300025981 Bacteria 6396
85 Ga0207658_10006328 3300025986 Bacteria 8083
86 Ga0207658_10008204 3300025986 Bacteria 7115
87 Ga0207703_10009799 3300026035 Bacteria 7515
88 Ga0207703_10065364 3300026035 Bacteria 2989
89 Ga0207676_10058059 3300026095 Bacteria 3050
90 Ga0207675_100000199 3300026118 Bacteria 55487
91 Ga0207675_100000462 3300026118 Bacteria 39560
92 Ga0209281_1000110 3300027111 Bacteria 215631
93 Ga0209371_1000035 3300027312 Bacteria 368979
94 Ga0209371_1001388 3300027312 Bacteria 16639
95 Ga0209282_1000230 3300027666 Bacteria 28914
96 Ga0209813_10000212 3300027866 Bacteria 17857
97 Ga0268265_10000109 3300028380 Bacteria 104063
98 Ga0268265_10000225 3300028380 Bacteria 65493
99 Ga0268265_10018190 3300028380 Bacteria 4868
100 Ga0268264_10000069 3300028381 Bacteria 270492
101 Ga0268264_10000691 3300028381 Bacteria 39209
102 Ga0268264_10074689 3300028381 Bacteria 2880
103 Ga0307515_10000023 3300028794 Bacteria 400846
104 Ga0307515_10001124 3300028794 Bacteria 61171
105 Ga0307515_10007958 3300028794 Bacteria 20811
106 Ga0268256_1000037 3300030500 Bacteria 367024
107 Ga0268256_1001900 3300030500 Bacteria 11529
108 Ga0265331_10039948 3300031250 Bacteria 2285
109 Ga0307513_10005224 3300031456 Bacteria 17200
110 Ga0307513_10067607 3300031456 Bacteria 3748
111 Ga0307412_10050170 3300031911 Bacteria 2753
112 Ga0395905_0001657 3300037471 Bacteria 26314
113 Ga0395905_0038723 3300037471 Bacteria 4472
114 Ga0439436_0008399 3300041404 Bacteria 3173
115 Ga0495638_0002416 3300046460 Bacteria 15259
116 Ga0495643_0012508 3300046522 Bacteria 5118
117 Ga0495654_0000121 3300046530 Bacteria 86743
118 Ga0495625_0013961 3300046660 Bacteria 6432
119 Ga0495588_0001064 3300046674 Bacteria 11908
120 Ga0495681_0008486 3300047470 Bacteria 6441
121 Ga0495686_0000624 3300047472 Bacteria 48658
122 Ga0495686_0089422 3300047472 Bacteria 1871
123 Ga0496100_0008367 3300048903 Bacteria 5766
124 Ga0496101_0008317 3300048904 Bacteria 6780
125 Ga0496104_0032561 3300048907 Bacteria 4852
126 Ga0496107_0000473 3300048910 Bacteria 22078
127 Ga0496110_0057720 3300048913 Bacteria 3417
128 Ga0496111_0000282 3300048914 Bacteria 24579
129 Ga0496113_0000241 3300048916 Bacteria 25760
130 Ga0496117_0000066 3300048920 Bacteria 253534
131 Ga0496117_0002381 3300048920 Bacteria 23937
132 Ga0496118_0003408 3300048921 Bacteria 20089
133 Ga0496120_0001197 3300048923 Bacteria 32900
134 Ga0496121_0000245 3300048924 Bacteria 116316
135 Ga0496121_0001299 3300048924 Bacteria 42922
136 Ga0496121_0026957 3300048924 Bacteria 5393
137 Ga0496122_0000024 3300048925 Bacteria 372400
138 Ga0496122_0000057 3300048925 Bacteria 253452
139 Ga0496122_0000172 3300048925 Bacteria 153862
140 Ga0496122_0000768 3300048925 Bacteria 61953
141 Ga0496122_0120065 3300048925 Bacteria 1698
142 Ga0496123_0000086 3300048926 Bacteria 183266
143 Ga0496123_0000096 3300048926 Bacteria 173914
144 Ga0496123_0000132 3300048926 Bacteria 153568
145 Ga0496124_0005707 3300048927 Bacteria 13869
146 Ga0496124_0006506 3300048927 Bacteria 12712
147 Ga0496124_0017772 3300048927 Bacteria 6687
148 Ga0496124_0119532 3300048927 Bacteria 2108
149 Ga0496125_0000651 3300048928 Bacteria 58001
150 Ga0496126_0001430 3300048929 Bacteria 37517
151 Ga0496126_0006285 3300048929 Bacteria 13262
152 Ga0501047_0012399 3300049581 Bacteria 8068
153 Ga0501071_0136343 3300049587 Bacteria 1826
154 Ga0501035_0178378 3300049822 Bacteria 1831
155 nmdc:mga03n38_22396_c1 3300050490 Bacteria 2557
156 nmdc:mga00v17_51916_c1 3300050491 Bacteria 2493
157 nmdc:mga00v17_59_c2 3300050491 Bacteria 33192
158 nmdc:mga0yw44_215_c1 3300050492 Bacteria 20484
159 nmdc:mga0yw44_2487_c1 3300050492 Bacteria 7880
160 nmdc:mga0yw44_60803_c1 3300050492 Bacteria 2315
161 nmdc:mga06z11_133_c1 3300050494 Bacteria 29647
162 nmdc:mga06z11_35773_c1 3300050494 Bacteria 2447
163 nmdc:mga04h51_503_c1 3300050495 Bacteria 9253
164 nmdc:mga07m45_884_c2 3300050496 Bacteria 11469
165 nmdc:mga0sz30_2883_c1 3300050516 Bacteria 6153
166 nmdc:mga0sz30_48599_c1 3300050516 Bacteria 1795
167 Ga0500643_002856 3300053087 Bacteria 8608
168 Ga0500643_009659 3300053087 Bacteria 3665
169 Ga0500556_0000013 3300053104 Bacteria 243797
170 Ga0500560_032129 3300053107 Bacteria 1594
171 Ga0500618_000045 3300053125 Bacteria 110042
172 Ga0500642_0000002 3300053130 Bacteria 795093
173 Ga0500655_000081 3300053133 Bacteria 25123
174 Ga0500561_0000021 3300053137 Bacteria 39116
175 Ga0500573_0001172 3300053140 Bacteria 12225
176 Ga0500573_0036241 3300053140 Bacteria 2848
177 Ga0500590_000198 3300053148 Bacteria 18343
178 Ga0500616_0001886 3300053153 Bacteria 18870
179 Ga0500622_0008332 3300053156 Bacteria 5807
180 Ga0500622_0072004 3300053156 Bacteria 1746
181 Ga0500624_000444 3300053157 Bacteria 12471
182 Ga0500636_0007674 3300053177 Bacteria 6239
183 Ga0500570_000014 3300053724 Bacteria 52194

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2643221637 2644208498 457
2 iso_pu_bacteria 2643221718 2644651750 457
3 3300047472 Ga0495686_0000624 Ga0495686_0000624_11643_13094 458
4 3300031250 Ga0265331_10039948 Ga0265331_100399482 459
5 3300005618 Ga0068864_100150802 Ga0068864_1001508022 467
6 3300028794 Ga0307515_10007958 Ga0307515_1000795812 467
7 3300005841 Ga0068863_100085020 Ga0068863_1000850202 468
8 iso_pu_bacteria 2643221636 2644203721 468
9 iso_pu_bacteria 2830075706 2830077062 470
10 iso_pu_bacteria 2558860983 2561469305 474
11 3300005844 Ga0068862_100000208 Ga0068862_10000020841 475
12 3300009553 Ga0105249_10000184 Ga0105249_1000018434 475
13 3300025961 Ga0207712_10000059 Ga0207712_1000005934 475
14 3300028380 Ga0268265_10000225 Ga0268265_1000022516 475
15 3300031456 Ga0307513_10005224 Ga0307513_1000522417 475
16 3300053177 Ga0500636_0007674 Ga0500636_0007674_2127_3602 475
17 iso_pu_bacteria 2643221637 2644206965 475
18 iso_pu_bacteria 2643221718 2644650613 475
19 iso_pu_bacteria 2989771324 2989773533 475
20 iso_pu_bacteria 2995392953 2995397173 475
21 3300005843 Ga0068860_100051543 Ga0068860_1000515433 476
22 3300028381 Ga0268264_10000691 Ga0268264_100006914 476
23 iso_pu_bacteria 2537561587 2537875392 476
24 iso_pu_bacteria 2554235003 2554244886 476
25 iso_pu_bacteria 2558860242 2559297280 476
26 iso_pu_bacteria 2599185210 2599605102 476
27 iso_pu_bacteria 2600255279 2601611617 476
28 iso_pu_bacteria 2600255308 2601748831 476
29 iso_pu_bacteria 2643221582 2643921821 476
30 iso_pu_bacteria 2643221693 2644519789 476
31 iso_pu_bacteria 2808606387 2808988762 476
32 iso_pu_bacteria 2818991439 2819561374 476
33 iso_pu_bacteria 2838675328 2838679474 476
34 iso_pu_bacteria 2838714209 2838718831 476
35 iso_pu_bacteria 2838719591 2838723830 476
36 iso_pu_bacteria 2838724970 2838729152 476
37 iso_pu_bacteria 2841846520 2841851079 476
38 iso_pu_bacteria 2841859092 2841863884 476
39 iso_pu_bacteria 2842124991 2842129850 476
40 iso_pu_bacteria 2842130223 2842134407 476
41 iso_pu_bacteria 2842152218 2842156403 476
42 iso_pu_bacteria 2842170452 2842175077 476
43 iso_pu_bacteria 2842175837 2842179993 476
44 iso_pu_bacteria 2842187318 2842191588 476
45 iso_pu_bacteria 2842211629 2842215905 476
46 iso_pu_bacteria 2842224351 2842228595 476
47 iso_pu_bacteria 2842515876 2842520666 476
48 iso_pu_bacteria 2899792073 2899794931 476
49 iso_pu_bacteria 2899845264 2899850441 476
50 iso_pu_bacteria 2919114240 2919118794 476
51 iso_pu_bacteria 2926754445 2926758185 476
52 iso_pu_bacteria 2926760298 2926764249 476
53 iso_pu_bacteria 2933006813 2933011177 476
54 iso_pu_bacteria 2933011516 2933016285 476
55 iso_pu_bacteria 2933594066 2933598996 476
56 iso_pu_bacteria 2979089926 2979090650 476
57 iso_pu_bacteria 2979095461 2979096174 476
58 iso_pu_bacteria 2979100975 2979101701 476
59 iso_pu_bacteria 2984509177 2984510346 476
60 iso_pu_bacteria 2984518228 2984518949 476
61 iso_pu_bacteria 2984537506 2984538694 476
62 iso_pu_bacteria 2984601300 2984605402 476
63 iso_pu_bacteria 650716007 650843710 476
64 iso_pu_bacteria 8003570095 8003574028 476
65 3300009093 Ga0105240_10000215 Ga0105240_1000021551 478
66 3300010375 Ga0105239_10000025 Ga0105239_10000025150 478
67 3300025913 Ga0207695_10000347 Ga0207695_1000034751 478
68 3300048924 Ga0496121_0000245 Ga0496121_0000245_71224_72675 478
69 3300048929 Ga0496126_0006285 Ga0496126_0006285_8594_10045 478
70 iso_pu_bacteria 2582581305 2585263603 478
71 iso_pu_bacteria 2891373044 2891377519 478
72 3300005335 Ga0070666_10019000 Ga0070666_100190003 479
73 3300005353 Ga0070669_100001204 Ga0070669_1000012044 479
74 3300005355 Ga0070671_100000289 Ga0070671_10000028923 479
75 3300005544 Ga0070686_100087638 Ga0070686_1000876382 479
76 3300005578 Ga0068854_100068327 Ga0068854_1000683272 479
77 3300005617 Ga0068859_100056730 Ga0068859_1000567302 479
78 3300005844 Ga0068862_100171615 Ga0068862_1001716152 479
79 3300006931 Ga0097620_100056731 Ga0097620_1000567312 479
80 3300009101 Ga0105247_10016973 Ga0105247_100169733 479
81 3300009545 Ga0105237_10000560 Ga0105237_1000056024 479
82 3300025914 Ga0207671_10000952 Ga0207671_1000095219 479
83 3300025931 Ga0207644_10000011 Ga0207644_1000001175 479
84 3300025972 Ga0207668_10049577 Ga0207668_100495772 479
85 3300025981 Ga0207640_10006543 Ga0207640_100065432 479
86 3300026035 Ga0207703_10009799 Ga0207703_100097993 479
87 3300028380 Ga0268265_10018190 Ga0268265_100181902 479
88 3300028381 Ga0268264_10074689 Ga0268264_100746892 479
89 3300046660 Ga0495625_0013961 Ga0495625_0013961_4346_5800 479
90 3300048903 Ga0496100_0008367 Ga0496100_0008367_1319_2773 479
91 3300048904 Ga0496101_0008317 Ga0496101_0008317_2196_3650 479
92 3300048907 Ga0496104_0032561 Ga0496104_0032561_1331_2785 479
93 3300048910 Ga0496107_0000473 Ga0496107_0000473_16153_17607 479
94 3300048913 Ga0496110_0057720 Ga0496110_0057720_646_2100 479
95 3300048916 Ga0496113_0000241 Ga0496113_0000241_4078_5532 479
96 3300048924 Ga0496121_0001299 Ga0496121_0001299_26530_27981 479
97 3300048925 Ga0496122_0000768 Ga0496122_0000768_13894_15354 479
98 3300053087 Ga0500643_009659 Ga0500643_009659_1232_2686 479
99 3300053104 Ga0500556_0000013 Ga0500556_0000013_199195_200649 479
100 3300053130 Ga0500642_0000002 Ga0500642_0000002_433065_434519 479
101 iso_pu_bacteria 2791355253 2793282534 479
102 iso_pu_bacteria 2842922631 2842922975 479
103 3300005347 Ga0070668_100073993 Ga0070668_1000739932 480
104 3300005617 Ga0068859_100014380 Ga0068859_1000143803 480
105 3300005719 Ga0068861_100000480 Ga0068861_1000004803 480
106 3300006048 Ga0075363_100003056 Ga0075363_1000030563 480
107 3300006177 Ga0075362_10001832 Ga0075362_100018323 480
108 3300006178 Ga0075367_10034261 Ga0075367_100342612 480
109 3300006931 Ga0097620_100014382 Ga0097620_1000143823 480
110 3300006948 Ga0099826_10001501 Ga0099826_100015012 480
111 3300006948 Ga0099826_10012183 Ga0099826_100121831 480
112 3300009177 Ga0105248_10001161 Ga0105248_1000116112 480
113 3300013100 Ga0157373_10001083 Ga0157373_1000108319 480
114 3300013102 Ga0157371_10000219 Ga0157371_1000021931 480
115 3300013104 Ga0157370_10000037 Ga0157370_100000374 480
116 3300025294 Ga0209025_1000277 Ga0209025_100027718 480
117 3300025923 Ga0207681_10021033 Ga0207681_100210332 480
118 3300025941 Ga0207711_10000788 Ga0207711_1000078813 480
119 3300025972 Ga0207668_10097516 Ga0207668_100975162 480
120 3300026118 Ga0207675_100000462 Ga0207675_10000046228 480
121 3300027312 Ga0209371_1000035 Ga0209371_1000035100 480
122 3300027312 Ga0209371_1001388 Ga0209371_10013889 480
123 3300027666 Ga0209282_1000230 Ga0209282_100023013 480
124 3300030500 Ga0268256_1000037 Ga0268256_100003799 480
125 3300030500 Ga0268256_1001900 Ga0268256_10019009 480
126 3300046674 Ga0495588_0001064 Ga0495588_0001064_534_1976 480
127 3300047470 Ga0495681_0008486 Ga0495681_0008486_3757_5199 480
128 3300048920 Ga0496117_0000066 Ga0496117_0000066_108555_109997 480
129 3300048921 Ga0496118_0003408 Ga0496118_0003408_11189_12631 480
130 3300048923 Ga0496120_0001197 Ga0496120_0001197_30923_32365 480
131 3300048925 Ga0496122_0000057 Ga0496122_0000057_143453_144895 480
132 3300048926 Ga0496123_0000096 Ga0496123_0000096_29020_30462 480
133 3300048927 Ga0496124_0006506 Ga0496124_0006506_5169_6611 480
134 3300050490 nmdc:mga03n38_22396_c1 nmdc:mga03n38_22396_c1_313_1755 480
135 3300050491 nmdc:mga00v17_51916_c1 nmdc:mga00v17_51916_c1_131_1573 480
136 3300050491 nmdc:mga00v17_59_c2 nmdc:mga00v17_59_c2_11527_12969 480
137 3300050492 nmdc:mga0yw44_215_c1 nmdc:mga0yw44_215_c1_19016_20458 480
138 3300050492 nmdc:mga0yw44_60803_c1 nmdc:mga0yw44_60803_c1_479_1921 480
139 3300050494 nmdc:mga06z11_35773_c1 nmdc:mga06z11_35773_c1_715_2157 480
140 3300050516 nmdc:mga0sz30_2883_c1 nmdc:mga0sz30_2883_c1_2422_3864 480
141 3300050516 nmdc:mga0sz30_48599_c1 nmdc:mga0sz30_48599_c1_253_1695 480
142 3300053107 Ga0500560_032129 Ga0500560_032129_128_1570 480
143 3300053137 Ga0500561_0000021 Ga0500561_0000021_28027_29469 480
144 3300053157 Ga0500624_000444 Ga0500624_000444_479_1921 480
145 3300005331 Ga0070670_100020977 Ga0070670_1000209772 481
146 3300005617 Ga0068859_100000858 Ga0068859_10000085827 481
147 3300005842 Ga0068858_100000967 Ga0068858_10000096724 481
148 3300005843 Ga0068860_100041968 Ga0068860_1000419682 481
149 3300006042 Ga0075368_10000971 Ga0075368_100009718 481
150 3300006048 Ga0075363_100008379 Ga0075363_1000083792 481
151 3300006178 Ga0075367_10000925 Ga0075367_1000092512 481
152 3300006931 Ga0097620_100000858 Ga0097620_10000085827 481
153 3300009101 Ga0105247_10014203 Ga0105247_100142032 481
154 3300009177 Ga0105248_10024724 Ga0105248_100247242 481
155 3300013306 Ga0163162_10058606 Ga0163162_100586062 481
156 3300014325 Ga0163163_10108258 Ga0163163_101082582 481
157 3300014968 Ga0157379_10009810 Ga0157379_100098102 481
158 3300025900 Ga0207710_10001144 Ga0207710_1000114410 481
159 3300025941 Ga0207711_10085568 Ga0207711_100855682 481
160 3300025972 Ga0207668_10001335 Ga0207668_100013352 481
161 3300026035 Ga0207703_10065364 Ga0207703_100653642 481
162 3300027866 Ga0209813_10000212 Ga0209813_100002125 481
163 3300028381 Ga0268264_10000069 Ga0268264_10000069182 481
164 3300037471 Ga0395905_0038723 Ga0395905_0038723_1871_3391 481
165 3300050494 nmdc:mga06z11_133_c1 nmdc:mga06z11_133_c1_18711_20162 481
166 3300050495 nmdc:mga04h51_503_c1 nmdc:mga04h51_503_c1_6960_8411 481
167 3300050496 nmdc:mga07m45_884_c2 nmdc:mga07m45_884_c2_540_1991 481
168 3300003187 JGI25151J46595_10002604 JGI25151J46595_100026043 482
169 3300009553 Ga0105249_10068243 Ga0105249_100682432 482
170 3300014326 Ga0157380_10000134 Ga0157380_100001344 482
171 3300025294 Ga0209025_1000052 Ga0209025_1000052158 482
172 3300025986 Ga0207658_10008204 Ga0207658_100082043 482
173 3300031911 Ga0307412_10050170 Ga0307412_100501702 482
174 3300037471 Ga0395905_0001657 Ga0395905_0001657_16301_17824 482
175 3300046522 Ga0495643_0012508 Ga0495643_0012508_148_1596 482
176 3300048920 Ga0496117_0002381 Ga0496117_0002381_1190_2638 482
177 3300048925 Ga0496122_0000024 Ga0496122_0000024_203545_204993 482
178 3300048926 Ga0496123_0000086 Ga0496123_0000086_127144_128592 482
179 3300048927 Ga0496124_0017772 Ga0496124_0017772_3914_5362 482
180 3300048928 Ga0496125_0000651 Ga0496125_0000651_47093_48541 482
181 3300048929 Ga0496126_0001430 Ga0496126_0001430_4092_5540 482
182 3300049581 Ga0501047_0012399 Ga0501047_0012399_5158_6606 482
183 3300049587 Ga0501071_0136343 Ga0501071_0136343_344_1792 482
184 3300049822 Ga0501035_0178378 Ga0501035_0178378_234_1685 482
185 3300053087 Ga0500643_002856 Ga0500643_002856_3486_4937 482
186 3300053133 Ga0500655_000081 Ga0500655_000081_3867_5315 482
187 3300053148 Ga0500590_000198 Ga0500590_000198_8527_9975 482
188 3300053156 Ga0500622_0008332 Ga0500622_0008332_777_2225 482
189 3300053724 Ga0500570_000014 Ga0500570_000014_9071_10519 482
190 iso_pu_bacteria 2510461069 2510841130 482
191 iso_pu_bacteria 2643221653 2644297724 482
192 iso_pu_bacteria 2643221719 2644655977 482
193 iso_pu_bacteria 2818991272 2819245234 482
194 iso_pu_bacteria 2989776772 2989777334 482
195 iso_pu_bacteria 8005246636 8005247478 482
196 iso_pu_bacteria 8018150411 8018152242 482
197 iso_pu_bacteria 2599185156 2599332700 483
198 3300053156 Ga0500622_0072004 Ga0500622_0072004_70_1644 484
199 iso_pu_bacteria 2821123053 2821126336 484
200 iso_pu_bacteria 2838736955 2838737188 484
201 iso_pu_bacteria 2841840854 2841842443 484
202 iso_pu_bacteria 2842140634 2842142223 484
203 iso_pu_bacteria 2857531043 2857532897 484
204 iso_pu_bacteria 2558860983 2561467481 485
205 iso_pu_bacteria 2919171160 2919173626 485
206 iso_pu_bacteria 2513237159 2513999605 486
207 iso_pu_bacteria 2582581283 2585169019 486
208 iso_pu_bacteria 2582581306 2585269319 486
209 iso_pu_bacteria 2582581865 2585390498 486
210 iso_pu_bacteria 2582581866 2585395840 486
211 iso_pu_bacteria 2600254933 2600373487 486
212 iso_pu_bacteria 2643221607 2644051242 486
213 iso_pu_bacteria 2643221636 2644200913 486
214 iso_pu_bacteria 2643221686 2644484146 486
215 iso_pu_bacteria 2643221689 2644497900 486
216 iso_pu_bacteria 2842521101 2842525803 486
217 3300005548 Ga0070665_100053583 Ga0070665_1000535833 488
218 3300006946 Ga0079104_1000063 Ga0079104_100006381 488
219 3300027111 Ga0209281_1000110 Ga0209281_100011082 488
220 3300048924 Ga0496121_0026957 Ga0496121_0026957_2461_4038 488
221 3300048927 Ga0496124_0005707 Ga0496124_0005707_1069_2646 488
222 3300003781 Ga0055536_1011182 Ga0055536_10111822 489
223 3300003792 Ga0055540_1012531 Ga0055540_10125311 489
224 3300003794 Ga0055531_10002301 Ga0055531_1000230110 489
225 3300005262 Ga0065165_1004491 Ga0065165_100449110 489
226 3300025292 Ga0209676_1006777 Ga0209676_10067776 489
227 3300025297 Ga0209758_1000105 Ga0209758_1000105139 489
228 3300025298 Ga0209050_1011493 Ga0209050_10114932 489
229 3300025303 Ga0209051_1002256 Ga0209051_100225611 489
230 3300025304 Ga0209257_1005869 Ga0209257_10058692 489
231 3300028794 Ga0307515_10001124 Ga0307515_1000112424 489
232 3300046460 Ga0495638_0002416 Ga0495638_0002416_10301_11773 489
233 3300046530 Ga0495654_0000121 Ga0495654_0000121_56848_58437 489
234 3300047472 Ga0495686_0089422 Ga0495686_0089422_148_1728 489
235 3300048914 Ga0496111_0000282 Ga0496111_0000282_13022_14596 489
236 3300048925 Ga0496122_0000172 Ga0496122_0000172_20603_22078 489
237 3300048925 Ga0496122_0120065 Ga0496122_0120065_162_1637 489
238 3300048926 Ga0496123_0000132 Ga0496123_0000132_20651_22126 489
239 3300048927 Ga0496124_0119532 Ga0496124_0119532_543_2018 489
240 3300050492 nmdc:mga0yw44_2487_c1 nmdc:mga0yw44_2487_c1_2657_4225 489
241 3300053125 Ga0500618_000045 Ga0500618_000045_6514_8094 489
242 3300053153 Ga0500616_0001886 Ga0500616_0001886_14065_15657 489
243 iso_pu_bacteria 2510917026 2511168511 489
244 iso_pu_bacteria 2585427633 2585997332 489
245 iso_pu_bacteria 2585427634 2586001940 489
246 iso_pu_bacteria 2599185236 2599719931 489
247 iso_pu_bacteria 2818991461 2819686616 489
248 iso_pu_bacteria 2854896431 2854897455 489
249 iso_pu_bacteria 2854916844 2854921414 489
250 iso_pu_bacteria 2899803654 2899804524 489
251 iso_pu_bacteria 8056875544 8056876311 489
252 3300001976 JGI24752J21851_1001310 JGI24752J21851_10013103 490
253 3300005335 Ga0070666_10000090 Ga0070666_1000009025 490
254 3300005353 Ga0070669_100000024 Ga0070669_10000002466 490
255 3300005355 Ga0070671_100000006 Ga0070671_100000006187 490
256 3300005445 Ga0070708_100048346 Ga0070708_1000483462 490
257 3300005544 Ga0070686_100060093 Ga0070686_1000600932 490
258 3300005618 Ga0068864_100113621 Ga0068864_1001136212 490
259 3300005719 Ga0068861_100023779 Ga0068861_1000237793 490
260 3300005844 Ga0068862_100000307 Ga0068862_10000030712 490
261 3300025315 Ga0207697_10000273 Ga0207697_100002732 490
262 3300025903 Ga0207680_10001008 Ga0207680_100010085 490
263 3300025923 Ga0207681_10000004 Ga0207681_10000004242 490
264 3300025931 Ga0207644_10000009 Ga0207644_1000000964 490
265 3300025986 Ga0207658_10006328 Ga0207658_100063285 490
266 3300026095 Ga0207676_10058059 Ga0207676_100580592 490
267 3300026118 Ga0207675_100000199 Ga0207675_10000019937 490
268 3300028380 Ga0268265_10000109 Ga0268265_1000010961 490
269 3300028794 Ga0307515_10000023 Ga0307515_1000002369 490
270 3300031456 Ga0307513_10067607 Ga0307513_100676072 490
271 3300041404 Ga0439436_0008399 Ga0439436_0008399_377_1855 490
272 3300053140 Ga0500573_0001172 Ga0500573_0001172_478_1956 490
273 3300053140 Ga0500573_0036241 Ga0500573_0036241_931_2409 490

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08323

Glyco_transf_5

Starch synthase catalytic domain

71

303

0.96

PF00534

Glycos_transf_1

Glycosyl transferases group 1

346

511

0.87

PF13692

Glyco_trans_1_4

Glycosyl transferases group 1

358

507

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cx4-assembly1.cif.gz_A crystal structure of e.coli gs mutant e377a in complex with adp and oligosaccharides 0.9527 1 472
2r4t-assembly1.cif.gz_A crystal structure of wild-type e.coli gs in complex with adp and glucose(wtgsc) 0.9493 1 473
3cx4-assembly1.cif.gz_A crystal structure of e.coli gs mutant e377a in complex with adp and oligosaccharides 0.943 1 472
2r4t-assembly1.cif.gz_A crystal structure of wild-type e.coli gs in complex with adp and glucose(wtgsc) 0.9397 1 473
6gne-assembly1.cif.gz_A catalytic domain of starch synthase iv from arabidopsis thaliana bound to adp and acarbose 0.8873 1 475
ID Description Score Start End Superfamily
1rzvA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.977 3 246 3.40.50.2000
3d1jA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9626 1 246 3.40.50.2000
af_A0A1D6HXP2_355_499_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9293 248 390 3.40.50.2000
1rzvB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9256 248 453 3.40.50.2000
3copA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9253 248 454 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A349XT23-F1-model_v4 starch synthase (EC 2.4.1.21) 0.9747 1 121 GO:0005829
GO:0005978
GO:0016757
AF-A0A379VIA2-F1-model_v4 starch synthase (EC 2.4.1.21) 0.9612 84 240 GO:0005829
GO:0005978
GO:0009011
AF-A0A447JAV7-F1-model_v4 starch synthase (EC 2.4.1.21) 0.9606 1 201 GO:0005829
GO:0005978
GO:0009011
AF-A0A7C5N490-F1-model_v4 starch synthase (EC 2.4.1.21) 0.9576 1 389 GO:0004373
GO:0005829
GO:0005978
GO:0009011
AF-A0A7K4DZG4-F1-model_v4 deleted 0.9549 2 222

Feature Viewer

pLDDT pTM Quality
89.94 0.9 High
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Predicted Structure (AlphaFold2)

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