F376113

General Info

Members Datasets Scaffolds Average Seq Length
269 185 538 436

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10078868|Ga0081539_100788681
Length 500
Sequence LPGRVERRAEAKDARARGSRGDCSQPRVGPWREPRRGKPDEARRERSGFPAPDETAPHPARASLWEAFLSRDNLARALRRVEQNAGAAGIDGMTAAGLRPWLHRYWPEIRRLLEVGTYRPLPVRRVAIPKPSGGERLLGVPTALDRLIQQALLQVLTSVFDPHFSNGSFGFRPGRSAHQAVERARQSIQDGAAWVVDVDLDAFFDRVQHDALMARLARRVDDKRVLRLLRRYLEAGVMADGIHQASEEGTPQGSPLSPLLGNVMLDDLDRELERRGHRFVRYADDLMVYVRSERAGQRIIEGIARYVESRLKLRVNRRKSAVAPATRRPFLGFGFFVRHGEVRVRLDPNARKRAKDRLRKLTARSRSISMEQRLQAVNRYTVGWTAYFAYADTPTPFRELDEWLRRRLRQVRWKEWKRSQNRRRNLRALGIPERAAREWAGSRKGCWRVAGSAILTRALPNAYWQEQGLQGFSDPYRRFRDATRTAGRGPACPVVWEGPG

Samples

Sample ID Description Type Environment
1 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
7 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
8 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
11 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
27 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
28 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
29 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
32 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
49 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
53 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
54 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
56 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
57 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
58 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
59 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
74 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
75 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
76 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
78 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
79 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
80 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
81 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
82 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
83 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
84 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
85 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
86 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
87 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
88 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
89 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
90 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
91 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
92 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
93 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
94 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
95 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
96 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
97 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
98 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
99 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
100 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
101 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
102 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
103 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
104 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
105 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
106 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
107 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
108 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
109 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
110 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
111 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
112 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
113 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
114 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
115 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
116 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
117 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
118 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
119 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
120 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
121 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
122 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
123 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
124 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
125 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
126 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
127 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
128 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
129 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
130 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
131 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
132 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
133 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
134 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
135 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
136 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
150 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
151 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
152 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
153 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
154 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
155 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
156 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
157 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
158 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
159 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
160 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
161 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
162 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
164 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
165 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
166 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
167 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
168 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
169 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
170 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
171 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
172 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
173 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
174 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
175 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
176 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
177 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
178 2519899620 Rhizobium sp. Pop5 Isolate Nodule
179 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
180 2791355266 Rhizobium sp. L43 Isolate Nodule
181 2854911287 Brucella lupini LUP21 Isolate Unclassified
182 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
183 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
184 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
185 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 84.39
Metatranscriptomes 5.58
Isolates 10.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.23
Nodule 5.2
Rhizoplane 0.74
Rhizosphere 80.67
Stem 0
Stem Tuber 0
Unclassified 0.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081539_10078868 3300005985 Bacteria 1737
2 JGI25155J39150_1000001 3300002704 Bacteria 354543
3 JGI25156J39149_1000001 3300002705 Bacteria 354557
4 JGI25154J39366_1000150 3300002738 Bacteria 54544
5 JGI25157J39369_1000044 3300002741 Bacteria 122466
6 JGI25406J46586_10030684 3300003203 Bacteria 2020
7 JGI25406J46586_10035147 3300003203 Bacteria 1832
8 Ga0058861_10009531 3300004800 Bacteria 2131
9 Ga0058861_11957687 3300004800 Bacteria 1866
10 Ga0058862_10079718 3300004803 Bacteria 2405
11 Ga0058862_10090433 3300004803 Bacteria 2243
12 Ga0070683_100129850 3300005329 Bacteria 2384
13 Ga0070690_100041727 3300005330 Bacteria 2905
14 Ga0070680_100140815 3300005336 Bacteria 2023
15 Ga0070680_100142087 3300005336 Bacteria 2013
16 Ga0070668_100036338 3300005347 Bacteria 3759
17 Ga0070668_100039828 3300005347 Bacteria 3594
18 Ga0070669_100139804 3300005353 Bacteria 1866
19 Ga0070674_100110906 3300005356 Bacteria 2014
20 Ga0070694_100082594 3300005444 Bacteria 2238
21 Ga0070708_100169815 3300005445 Unclassified 2036
22 Ga0070681_10136804 3300005458 Bacteria 2380
23 Ga0070681_10150226 3300005458 Bacteria 2256
24 Ga0070698_100303870 3300005471 Bacteria 1526
25 Ga0070679_100101384 3300005530 Bacteria 2865
26 Ga0070679_100109658 3300005530 Bacteria 2746
27 Ga0070679_100236587 3300005530 Bacteria 1785
28 Ga0070679_100282894 3300005530 Bacteria 1611
29 Ga0070684_100231134 3300005535 Bacteria 1689
30 Ga0070697_100164777 3300005536 Bacteria 1874
31 Ga0068855_100098816 3300005563 Bacteria 3362
32 Ga0068855_100258940 3300005563 Bacteria 1939
33 Ga0068857_100092595 3300005577 Bacteria 2706
34 Ga0068856_100206293 3300005614 Bacteria 1980
35 Ga0068856_100207775 3300005614 Bacteria 1973
36 Ga0068861_100087323 3300005719 Bacteria 2454
37 Ga0068861_100129792 3300005719 Bacteria 2044
38 Ga0068861_100164263 3300005719 Bacteria 1834
39 Ga0081455_10042165 3300005937 Bacteria 4006
40 Ga0081538_10009714 3300005981 Bacteria 7981
41 Ga0081538_10057750 3300005981 Bacteria 2257
42 Ga0081539_10041862 3300005985 Bacteria 2673
43 Ga0081539_10060323 3300005985 Bacteria 2084
44 Ga0070715_10042163 3300006163 Bacteria 1917
45 Ga0075427_10002216 3300006194 Bacteria 2587
46 Ga0075428_100152093 3300006844 Bacteria 2514
47 Ga0075430_100132970 3300006846 Bacteria 2073
48 Ga0075431_100282656 3300006847 Unclassified 1680
49 Ga0105240_10159982 3300009093 Bacteria 2676
50 Ga0111539_10342793 3300009094 Bacteria 1739
51 Ga0105245_10291068 3300009098 Bacteria 1600
52 Ga0105241_10107478 3300009174 Bacteria 2229
53 Ga0105241_10139277 3300009174 Bacteria 1974
54 Ga0105249_10268180 3300009553 Bacteria 1700
55 Ga0105239_10188391 3300010375 Bacteria 2309
56 Ga0157369_10223422 3300013105 Bacteria 1970
57 Ga0157374_10122130 3300013296 Bacteria 2515
58 Ga0157374_10229425 3300013296 Bacteria 1823
59 Ga0163162_10137044 3300013306 Bacteria 2559
60 Ga0163162_10179659 3300013306 Bacteria 2242
61 Ga0157372_10187266 3300013307 Bacteria 2397
62 Ga0157375_10171219 3300013308 Bacteria 2319
63 Ga0157375_10211126 3300013308 Bacteria 2099
64 Ga0163163_10078783 3300014325 Bacteria 3292
65 Ga0157376_10024043 3300014969 Bacteria 4778
66 Ga0197907_11246007 3300020069 Bacteria 1790
67 Ga0206356_10890710 3300020070 Bacteria 2071
68 Ga0206355_1024140 3300020076 Bacteria 1975
69 Ga0206355_1719754 3300020076 Bacteria 1883
70 Ga0206352_10892716 3300020078 Bacteria 1954
71 Ga0206350_11115441 3300020080 Bacteria 2412
72 Ga0206354_10938285 3300020081 Bacteria 2495
73 Ga0213874_10016137 3300021377 Bacteria 1982
74 Ga0213876_10076432 3300021384 Bacteria 1768
75 Ga0224712_10012524 3300022467 Bacteria 2673
76 Ga0224712_10023529 3300022467 Bacteria 2140
77 Ga0224712_10033898 3300022467 Bacteria 1873
78 Ga0209435_100012 3300025206 Bacteria 401621
79 Ga0209646_1000026 3300025246 Bacteria 401621
80 Ga0209026_1000014 3300025250 Bacteria 401621
81 Ga0209759_1000012 3300025256 Bacteria 401621
82 Ga0207685_10021017 3300025905 Bacteria 2180
83 Ga0207654_10064203 3300025911 Bacteria 2158
84 Ga0207707_10100919 3300025912 Bacteria 2522
85 Ga0207707_10110335 3300025912 Bacteria 2404
86 Ga0207695_10188003 3300025913 Bacteria 1984
87 Ga0207660_10130080 3300025917 Bacteria 1915
88 Ga0207652_10166708 3300025921 Bacteria 1975
89 Ga0207646_10103067 3300025922 Bacteria 2559
90 Ga0207694_10139706 3300025924 Bacteria 1947
91 Ga0207661_10161441 3300025944 Bacteria 1944
92 Ga0207667_10160014 3300025949 Bacteria 2316
93 Ga0207708_10107492 3300026075 Bacteria 2163
94 Ga0207702_10158338 3300026078 Bacteria 2066
95 Ga0207674_10061518 3300026116 Bacteria 3794
96 Ga0207674_10121284 3300026116 Bacteria 2582
97 Ga0207675_100176904 3300026118 Bacteria 2042
98 Ga0207675_100199652 3300026118 Bacteria 1921
99 Ga0265326_10019178 3300028558 Bacteria 1966
100 Ga0265323_10034316 3300028653 Bacteria 1874
101 Ga0265338_10225616 3300028800 Bacteria 1396
102 Ga0265760_10015122 3300031090 Bacteria 2212
103 Ga0265316_10084962 3300031344 Bacteria 2422
104 Ga0265316_10102941 3300031344 Bacteria 2168
105 Ga0265316_10110007 3300031344 Bacteria 2087
106 Ga0265316_10111696 3300031344 Bacteria 2069
107 Ga0316579_10055775 3300031691 Bacteria 1854
108 Ga0316576_10096183 3300031727 Bacteria 2210
109 Ga0316576_10112148 3300031727 Bacteria 2044
110 Ga0316577_10065871 3300031733 Bacteria 2022
111 Ga0316577_10099250 3300031733 Bacteria 1631
112 Ga0307410_10123716 3300031852 Bacteria 1890
113 Ga0307411_10116970 3300032005 Bacteria 1920
114 Ga0316583_10009426 3300032133 Bacteria 3514
115 Ga0316583_10029027 3300032133 Bacteria 1973
116 Ga0316585_10019819 3300032137 Bacteria 2053
117 Ga0373930_0016349 3300034816 Bacteria 1402
118 Ga0373928_0014158 3300035084 Bacteria 1609
119 Ga0316574_0139513 3300035398 Bacteria 1561
120 Ga0373935_0094082 3300035692 Bacteria 1966
121 Ga0373927_0091645 3300035695 Bacteria 1974
122 Ga0373933_0072029 3300035724 Bacteria 2104
123 Ga0316582_0160851 3300036647 Bacteria 1521
124 Ga0316584_0092693 3300036712 Bacteria 2261
125 Ga0316584_0105365 3300036712 Bacteria 2110
126 Ga0373925_0111928 3300037068 Bacteria 2110
127 Ga0400491_16440 3300038727 Bacteria 1616
128 Ga0400489_03603 3300039093 Bacteria 5099
129 Ga0400489_40995 3300039093 Bacteria 1443
130 Ga0436365_0259628 3300039437 Bacteria 1996
131 Ga0436363_0184415 3300039450 Bacteria 31021
132 Ga0436362_0540050 3300039453 Bacteria 2135
133 Ga0436362_0710547 3300039453 Bacteria 2594
134 Ga0451798_0459680 3300041458 Bacteria 1636
135 Ga0451833_0317016 3300041491 Bacteria 2079
136 Ga0451851_0412413 3300041507 Bacteria 2174
137 Ga0439456_010277 3300042013 Bacteria 1933
138 Ga0439458_0022155 3300042157 Bacteria 1474
139 Ga0439435_0023778 3300042436 Bacteria 1611
140 Ga0466966_0083002 3300044684 Bacteria 1994
141 Ga0466963_0088086 3300044694 Bacteria 2111
142 Ga0466964_0025856 3300044706 Bacteria 2295
143 Ga0453684_0096625 3300044712 Bacteria 3628
144 Ga0453684_0253237 3300044712 Bacteria 2021
145 Ga0466959_0082171 3300045049 Bacteria 2321
146 Ga0451576_0179375 3300045051 Bacteria 2211
147 Ga0451576_0206802 3300045051 Bacteria 2049
148 Ga0466958_0070098 3300045836 Bacteria 2144
149 Ga0466967_0167190 3300045976 Bacteria 2067
150 Ga0495580_0049307 3300046472 Bacteria 2979
151 Ga0495580_0083107 3300046472 Bacteria 2231
152 Ga0495639_0089544 3300046475 Bacteria 1442
153 Ga0495584_0061299 3300046491 Bacteria 1891
154 Ga0495606_0075967 3300046507 Bacteria 2101
155 Ga0495608_0044018 3300046511 Bacteria 2981
156 Ga0495610_0003642 3300046512 Bacteria 11863
157 Ga0495618_0111659 3300046514 Bacteria 1750
158 Ga0495620_0004724 3300046515 Bacteria 7655
159 Ga0495630_0124219 3300046517 Bacteria 1958
160 Ga0495654_0041675 3300046530 Bacteria 2282
161 Ga0495597_0036694 3300046542 Bacteria 2205
162 Ga0495611_0040968 3300046648 Bacteria 2065
163 Ga0495635_0042605 3300046663 Bacteria 3134
164 Ga0495588_0107883 3300046674 Bacteria 1466
165 Ga0495658_0042640 3300046683 Bacteria 2534
166 Ga0495624_0099150 3300046690 Bacteria 1794
167 Ga0495581_0065008 3300047315 Bacteria 2108
168 Ga0495604_0000084 3300047317 Bacteria 82199
169 Ga0495676_0209511 3300047321 Bacteria 1349
170 Ga0495680_0106854 3300047322 Bacteria 2079
171 Ga0495687_001575 3300047443 Bacteria 20711
172 Ga0495687_029386 3300047443 Bacteria 2545
173 Ga0495687_034896 3300047443 Bacteria 2267
174 Ga0496109_0176678 3300048912 Bacteria 2005
175 Ga0495678_038011 3300049459 Bacteria 1951
176 Ga0501031_0066283 3300049568 Bacteria 2352
177 Ga0501032_0098757 3300049569 Bacteria 1934
178 Ga0501033_0062565 3300049570 Bacteria 2741
179 Ga0501036_0088880 3300049572 Bacteria 2610
180 Ga0501036_0144415 3300049572 Bacteria 2007
181 Ga0501037_0095065 3300049573 Bacteria 2154
182 Ga0501038_0085634 3300049574 Bacteria 2649
183 Ga0501039_0108226 3300049575 Bacteria 2172
184 Ga0501040_0052632 3300049576 Bacteria 2787
185 Ga0501040_0123778 3300049576 Bacteria 1815
186 Ga0501041_0039500 3300049577 Bacteria 2864
187 Ga0501041_0081504 3300049577 Bacteria 1992
188 Ga0501042_0050599 3300049578 Bacteria 2963
189 Ga0501042_0108206 3300049578 Bacteria 2001
190 Ga0501042_0114657 3300049578 Bacteria 1940
191 Ga0501043_0094980 3300049579 Bacteria 2343
192 Ga0501043_0172259 3300049579 Bacteria 1688
193 Ga0501046_0093024 3300049580 Bacteria 2317
194 Ga0501046_0117370 3300049580 Bacteria 2027
195 Ga0501048_0056203 3300049582 Bacteria 2792
196 Ga0501048_0154629 3300049582 Bacteria 1622
197 Ga0501068_0076850 3300049584 Bacteria 2044
198 Ga0501068_0079886 3300049584 Bacteria 2005
199 Ga0501070_0113880 3300049586 Bacteria 2234
200 Ga0501070_0145830 3300049586 Bacteria 1954
201 Ga0501071_0071929 3300049587 Bacteria 2521
202 Ga0501071_0113651 3300049587 Bacteria 2002
203 Ga0501072_0070682 3300049588 Bacteria 2757
204 Ga0501072_0090753 3300049588 Bacteria 2425
205 Ga0501072_0120372 3300049588 Bacteria 2091
206 Ga0501073_0017040 3300049589 Bacteria 5264
207 Ga0501073_0090429 3300049589 Bacteria 2127
208 Ga0501074_0001267 3300049590 Bacteria 16694
209 Ga0501074_0079773 3300049590 Bacteria 2348
210 Ga0501074_0261078 3300049590 Bacteria 1231
211 Ga0501075_0036710 3300049591 Bacteria 3658
212 Ga0501075_0122130 3300049591 Bacteria 1982
213 Ga0501076_0075798 3300049592 Bacteria 2696
214 Ga0501076_0140818 3300049592 Bacteria 1959
215 Ga0501076_0153759 3300049592 Bacteria 1872
216 Ga0501077_0086774 3300049593 Bacteria 1983
217 Ga0501077_0087099 3300049593 Bacteria 1979
218 Ga0501079_0000565 3300049741 Bacteria 24354
219 Ga0501079_0097320 3300049741 Bacteria 2281
220 Ga0501080_0118684 3300049742 Bacteria 2452
221 Ga0501080_0174777 3300049742 Bacteria 1979
222 Ga0501081_0109521 3300049743 Bacteria 1959
223 Ga0501083_0130031 3300049744 Bacteria 1650
224 Ga0501035_0156941 3300049822 Bacteria 1971
225 Ga0501035_0293751 3300049822 Bacteria 1371
226 Ga0501044_0165836 3300049823 Bacteria 2183
227 Ga0501045_0064942 3300049824 Bacteria 2679
228 Ga0501045_0113731 3300049824 Bacteria 2007
229 nmdc:mga05p37_364577_c1 3300050507 Bacteria 1698
230 nmdc:mga0qj67_151187_c1 3300050509 Bacteria 1884
231 nmdc:mga08y16_412107_c1 3300050511 Bacteria 1382
232 Ga0500610_0022279 3300053079 Bacteria 3122
233 Ga0500641_0001520 3300053096 Bacteria 8280
234 Ga0500555_019131 3300053103 Bacteria 1972
235 Ga0500562_005910 3300053108 Bacteria 3081
236 Ga0500627_0052106 3300053158 Bacteria 1786
237 Ga0500625_027805 3300053729 Bacteria 2683
238 Ga0501084_0080930 3300054114 Bacteria 2723
239 Ga0501084_0131038 3300054114 Bacteria 2110
240 Ga0501082_0101444 3300060353 Bacteria 2489
241 Ga0501082_0158639 3300060353 Bacteria 1965
242 Ga0530510_0118741 3300061734 Bacteria 1940
243 2511501184 2511231052 Bacteria 6974333
244 2520381260 2519899620 Bacteria 6499161
245 2688391652 2687453341 Bacteria 6534136
246 2688391949 2687453341 Bacteria 6534136
247 2688392118 2687453341 Bacteria 6534136
248 2688392606 2687453341 Bacteria 6534136
249 2688392608 2687453341 Bacteria 6534136
250 2688392994 2687453341 Bacteria 6534136
251 2688393092 2687453341 Bacteria 6534136
252 2688393192 2687453341 Bacteria 6534136
253 2688394768 2687453341 Bacteria 6534136
254 2688395737 2687453341 Bacteria 6534136
255 2688395812 2687453341 Bacteria 6534136
256 2688395826 2687453341 Bacteria 6534136
257 2793364538 2791355266 Bacteria 7116587
258 2854911423 2854911287 Bacteria 5582813
259 2915598021 2915597211 Bacteria 6475886
260 2915599216 2915597211 Bacteria 6475886
261 2915600308 2915597211 Bacteria 6475886
262 2915601578 2915597211 Bacteria 6475886
263 2915601796 2915597211 Bacteria 6475886
264 2915602524 2915597211 Bacteria 6475886
265 2915602571 2915597211 Bacteria 6475886
266 2915603274 2915597211 Bacteria 6475886
267 2957490009 2957484790 Bacteria 6703082
268 2967736954 2967735183 Bacteria 6827012
269 2970176236 2970170962 Bacteria 6876229
270 Ga0081539_10078868
271 JGI25155J39150_1000001
272 JGI25156J39149_1000001
273 JGI25154J39366_1000150
274 JGI25157J39369_1000044
275 JGI25406J46586_10030684
276 JGI25406J46586_10035147
277 Ga0058861_10009531
278 Ga0058861_11957687
279 Ga0058862_10079718
280 Ga0058862_10090433
281 Ga0070683_100129850
282 Ga0070690_100041727
283 Ga0070680_100140815
284 Ga0070680_100142087
285 Ga0070668_100036338
286 Ga0070668_100039828
287 Ga0070669_100139804
288 Ga0070674_100110906
289 Ga0070694_100082594
290 Ga0070708_100169815
291 Ga0070681_10136804
292 Ga0070681_10150226
293 Ga0070698_100303870
294 Ga0070679_100101384
295 Ga0070679_100109658
296 Ga0070679_100236587
297 Ga0070679_100282894
298 Ga0070684_100231134
299 Ga0070697_100164777
300 Ga0068855_100098816
301 Ga0068855_100258940
302 Ga0068857_100092595
303 Ga0068856_100206293
304 Ga0068856_100207775
305 Ga0068861_100087323
306 Ga0068861_100129792
307 Ga0068861_100164263
308 Ga0081455_10042165
309 Ga0081538_10009714
310 Ga0081538_10057750
311 Ga0081539_10041862
312 Ga0081539_10060323
313 Ga0070715_10042163
314 Ga0075427_10002216
315 Ga0075428_100152093
316 Ga0075430_100132970
317 Ga0075431_100282656
318 Ga0105240_10159982
319 Ga0111539_10342793
320 Ga0105245_10291068
321 Ga0105241_10107478
322 Ga0105241_10139277
323 Ga0105249_10268180
324 Ga0105239_10188391
325 Ga0157369_10223422
326 Ga0157374_10122130
327 Ga0157374_10229425
328 Ga0163162_10137044
329 Ga0163162_10179659
330 Ga0157372_10187266
331 Ga0157375_10171219
332 Ga0157375_10211126
333 Ga0163163_10078783
334 Ga0157376_10024043
335 Ga0197907_11246007
336 Ga0206356_10890710
337 Ga0206355_1024140
338 Ga0206355_1719754
339 Ga0206352_10892716
340 Ga0206350_11115441
341 Ga0206354_10938285
342 Ga0213874_10016137
343 Ga0213876_10076432
344 Ga0224712_10012524
345 Ga0224712_10023529
346 Ga0224712_10033898
347 Ga0209435_100012
348 Ga0209646_1000026
349 Ga0209026_1000014
350 Ga0209759_1000012
351 Ga0207685_10021017
352 Ga0207654_10064203
353 Ga0207707_10100919
354 Ga0207707_10110335
355 Ga0207695_10188003
356 Ga0207660_10130080
357 Ga0207652_10166708
358 Ga0207646_10103067
359 Ga0207694_10139706
360 Ga0207661_10161441
361 Ga0207667_10160014
362 Ga0207708_10107492
363 Ga0207702_10158338
364 Ga0207674_10061518
365 Ga0207674_10121284
366 Ga0207675_100176904
367 Ga0207675_100199652
368 Ga0265326_10019178
369 Ga0265323_10034316
370 Ga0265338_10225616
371 Ga0265760_10015122
372 Ga0265316_10084962
373 Ga0265316_10102941
374 Ga0265316_10110007
375 Ga0265316_10111696
376 Ga0316579_10055775
377 Ga0316576_10096183
378 Ga0316576_10112148
379 Ga0316577_10065871
380 Ga0316577_10099250
381 Ga0307410_10123716
382 Ga0307411_10116970
383 Ga0316583_10009426
384 Ga0316583_10029027
385 Ga0316585_10019819
386 Ga0373930_0016349
387 Ga0373928_0014158
388 Ga0316574_0139513
389 Ga0373935_0094082
390 Ga0373927_0091645
391 Ga0373933_0072029
392 Ga0316582_0160851
393 Ga0316584_0092693
394 Ga0316584_0105365
395 Ga0373925_0111928
396 Ga0400491_16440
397 Ga0400489_03603
398 Ga0400489_40995
399 Ga0436365_0259628
400 Ga0436363_0184415
401 Ga0436362_0540050
402 Ga0436362_0710547
403 Ga0451798_0459680
404 Ga0451833_0317016
405 Ga0451851_0412413
406 Ga0439456_010277
407 Ga0439458_0022155
408 Ga0439435_0023778
409 Ga0466966_0083002
410 Ga0466963_0088086
411 Ga0466964_0025856
412 Ga0453684_0096625
413 Ga0453684_0253237
414 Ga0466959_0082171
415 Ga0451576_0179375
416 Ga0451576_0206802
417 Ga0466958_0070098
418 Ga0466967_0167190
419 Ga0495580_0049307
420 Ga0495580_0083107
421 Ga0495639_0089544
422 Ga0495584_0061299
423 Ga0495606_0075967
424 Ga0495608_0044018
425 Ga0495610_0003642
426 Ga0495618_0111659
427 Ga0495620_0004724
428 Ga0495630_0124219
429 Ga0495654_0041675
430 Ga0495597_0036694
431 Ga0495611_0040968
432 Ga0495635_0042605
433 Ga0495588_0107883
434 Ga0495658_0042640
435 Ga0495624_0099150
436 Ga0495581_0065008
437 Ga0495604_0000084
438 Ga0495676_0209511
439 Ga0495680_0106854
440 Ga0495687_001575
441 Ga0495687_029386
442 Ga0495687_034896
443 Ga0496109_0176678
444 Ga0495678_038011
445 Ga0501031_0066283
446 Ga0501032_0098757
447 Ga0501033_0062565
448 Ga0501036_0088880
449 Ga0501036_0144415
450 Ga0501037_0095065
451 Ga0501038_0085634
452 Ga0501039_0108226
453 Ga0501040_0052632
454 Ga0501040_0123778
455 Ga0501041_0039500
456 Ga0501041_0081504
457 Ga0501042_0050599
458 Ga0501042_0108206
459 Ga0501042_0114657
460 Ga0501043_0094980
461 Ga0501043_0172259
462 Ga0501046_0093024
463 Ga0501046_0117370
464 Ga0501048_0056203
465 Ga0501048_0154629
466 Ga0501068_0076850
467 Ga0501068_0079886
468 Ga0501070_0113880
469 Ga0501070_0145830
470 Ga0501071_0071929
471 Ga0501071_0113651
472 Ga0501072_0070682
473 Ga0501072_0090753
474 Ga0501072_0120372
475 Ga0501073_0017040
476 Ga0501073_0090429
477 Ga0501074_0001267
478 Ga0501074_0079773
479 Ga0501074_0261078
480 Ga0501075_0036710
481 Ga0501075_0122130
482 Ga0501076_0075798
483 Ga0501076_0140818
484 Ga0501076_0153759
485 Ga0501077_0086774
486 Ga0501077_0087099
487 Ga0501079_0000565
488 Ga0501079_0097320
489 Ga0501080_0118684
490 Ga0501080_0174777
491 Ga0501081_0109521
492 Ga0501083_0130031
493 Ga0501035_0156941
494 Ga0501035_0293751
495 Ga0501044_0165836
496 Ga0501045_0064942
497 Ga0501045_0113731
498 nmdc:mga05p37_364577_c1
499 nmdc:mga0qj67_151187_c1
500 nmdc:mga08y16_412107_c1
501 Ga0500610_0022279
502 Ga0500641_0001520
503 Ga0500555_019131
504 Ga0500562_005910
505 Ga0500627_0052106
506 Ga0500625_027805
507 Ga0501084_0080930
508 Ga0501084_0131038
509 Ga0501082_0101444
510 Ga0501082_0158639
511 Ga0530510_0118741
512 2511501184
513 2520381260
514 2688391652
515 2688391949
516 2688392118
517 2688392606
518 2688392608
519 2688392994
520 2688393092
521 2688393192
522 2688394768
523 2688395737
524 2688395812
525 2688395826
526 2793364538
527 2854911423
528 2915598021
529 2915599216
530 2915600308
531 2915601578
532 2915601796
533 2915602524
534 2915602571
535 2915603274
536 2957490009
537 2967736954
538 2970176236

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00078

RVT_1

Reverse transcriptase (RNA-dependent DNA polymerase)

128

335

0.94

PF08388

GIIM

Group II intron, maturase-specific domain

351

430

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ar1-assembly2.cif.gz_D structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.949 2 419
6ar1-assembly1.cif.gz_A structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.9459 2 419
8t2r-assembly1.cif.gz_D structure of a group ii intron ribonucleoprotein in the pre-ligation (pre-2f) state 0.9406 2 414
6ar1-assembly2.cif.gz_D structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.9402 2 419
7uin-assembly1.cif.gz_D cryoem structure of an group ii intron retroelement 0.9375 2 414
ID Description Score Start End Superfamily
af_Q47688_90_332_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9463 64 268 3.30.70.270
af_P05511_299_561_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.8948 64 268 3.20.20.210
af_Q54BA4_491_738_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8858 73 260 3.30.70.270
af_Q55E47_391_640_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8818 64 260 3.30.70.270
af_Q54EA8_349_594_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.88 64 259 3.30.70.270
ID Description Score Start End GO Terms
AF-A0A365TK78-F1-model_v4 RNA-directed DNA polymerase (EC 2.7.7.49) 0.9929 2 285 GO:0003720
GO:0003723
GO:0051607
AF-A0A0W1AT49-F1-model_v4 RNA-directed DNA polymerase (EC 2.7.7.49) 0.9927 2 289 GO:0003723
GO:0003964
GO:0051607
AF-Q67M30-F1-model_v4 Reverse transcriptase domain-containing protein 0.991 1 168
AF-A0A2R4N317-F1-model_v4 Group II intron reverse transcriptase/maturase 0.9905 2 168 GO:0003964
AF-A0A5S3RJT2-F1-model_v4 RNA-directed DNA polymerase (EC 2.7.7.49) 0.9904 70 258 GO:0003723
GO:0003964
GO:0051607

Map