F366943

General Info

Members Datasets Scaffolds Average Seq Length
256 210 141 194

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3004334049|3004340561
Length 217
Sequence TSREPVERRFVFHRALDSLTETGRPRQHVLWAEYSRMMASLALKIPMHQTELDFPQANDIRINDPAPIMRAAGDAIELASMTFGFPPAGPKGGPVFNFRSEGRQFGNSKRCLIPASAFFEFTGTKYPKEKHHFTLNGSSFMAVAGLWREAVGNKPPTFTMLTTDPGPDIAPYHNRQVVVLRPENWAAWINLTKPEAELLRPLPAGSLSAETVRPERS

Samples

Sample ID Description Type Environment
1 2508501123 Mesorhizobium sp. WSM3626 Isolate Nodule
2 2512875024 Mesorhizobium loti R88b Isolate Nodule
3 2513237090 Mesorhizobium sp. WSM3224 Isolate Nodule
4 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
5 2513237164 Mesorhizobium loti CJ3sym Isolate Nodule
6 2643221627 Mesorhizobium sp. Root102 Isolate Unclassified
7 2687453392 Mesorhizobium ciceri biserrulae WSM1284 Isolate Unclassified
8 2693429783 Mesorhizobium sp. LCM 4577 Isolate Rhizosphere
9 2693429784 Mesorhizobium sp. LCM 4576 Isolate Rhizosphere
10 2756170246 Mesorhizobium loti DSM 2626 Isolate Nodule
11 2791355123 Mesorhizobium sophorae ICMP 19535 Isolate Unclassified
12 2844009547 Mesorhizobium sp. M7A.F.Ce.TU.012.03.2.1 Isolate Nodule
13 2847686936 Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1 Isolate Nodule
14 2856320880 Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 Isolate Nodule
15 2856334872 Mesorhizobium sp. M7A.F.Ca.US.005.03.1.1 Isolate Nodule
16 2856364286 Mesorhizobium sp. M00.F.Ca.ET.151.01.1.1 Isolate Nodule
17 2857349434 Mesorhizobium sp. M2E.F.Ca.ET.166.01.1.1 Isolate Nodule
18 2857367948 Mesorhizobium sp. M7A.F.Ca.US.002.01.1.1 Isolate Nodule
19 2869169390 Mesorhizobium sp. M7A.F.Ca.CA.001.10.2.1 Isolate Nodule
20 2869242130 Mesorhizobium sp. M7A.F.Ca.CA.004.11.2.1 Isolate Nodule
21 2869249662 Mesorhizobium sp. M7A.F.Ca.CA.001.16.1.1 Isolate Nodule
22 2869256925 Mesorhizobium sp. M7A.F.Ca.MR.176.00.0.0 Isolate Nodule
23 2869264136 Mesorhizobium sp. M7A.F.Ca.CA.001.15.1.1 Isolate Nodule
24 2869285874 Mesorhizobium sp. M2D.F.Ca.ET.147.01.1.1 Isolate Nodule
25 2871429161 Mesorhizobium sp. M2D.F.Ca.ET.225.01.1.1 Isolate Nodule
26 2871435913 Mesorhizobium sp. M7A.F.Ca.MR.228.00.0.0 Isolate Nodule
27 2871444079 Mesorhizobium sp. M1A.F.Ca.IN.020.06.1.1 Isolate Nodule
28 2871451962 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Isolate Nodule
29 2871459585 Mesorhizobium sp. M7A.F.Ca.CA.001.09.1.1 Isolate Nodule
30 2871481445 Mesorhizobium sp. M7A.F.Ca.CA.004.02.1.1 Isolate Nodule
31 2874102143 Mesorhizobium sp. M1A.F.Ca.IN.022.04.1.1 Isolate Nodule
32 2874116593 Mesorhizobium sp. M7A.F.Ca.CA.004.08.2.1 Isolate Nodule
33 2874146452 Mesorhizobium sp. M2D.F.Ca.ET.160.01.1.1 Isolate Nodule
34 2874155637 Mesorhizobium sp. M2D.F.Ca.ET.224.01.1.1 Isolate Nodule
35 2876386047 Mesorhizobium sp. M7A.F.Ca.CA.004.07.1.1 Isolate Nodule
36 2876413966 Mesorhizobium sp. M2D.F.Ca.ET.233.01.1.1 Isolate Nodule
37 2876420981 Mesorhizobium sp. M7A.F.Ca.CA.004.08.1.1 Isolate Nodule
38 2878738818 Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 Isolate Nodule
39 2878745973 Mesorhizobium sp. M2D.F.Ca.ET.226.01.1.1 Isolate Nodule
40 2878781027 Mesorhizobium sp. M7A.F.Ca.CA.001.12.2.1 Isolate Nodule
41 2888337043 Mesorhizobium sp. M8A.F.Ca.ET.057.01.1.1 Isolate Nodule
42 2889010040 Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 Isolate Nodule
43 2903492973 Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 Isolate Nodule
44 2906308376 Mesorhizobium sp. M2D.F.Ca.ET.185.01.1.1 Isolate Nodule
45 2906321335 Mesorhizobium sp. M2D.F.Ca.ET.206.01.1.1 Isolate Nodule
46 2906328253 Mesorhizobium sp. M1A.T.Ca.IN.004.03.1.1 Isolate Nodule
47 2906363423 Mesorhizobium sp. M7A.F.Ca.CA.001.14.1.1 Isolate Nodule
48 2906370794 Mesorhizobium sp. M7A.F.Ca.CA.001.13.1.1 Isolate Nodule
49 2906393657 Mesorhizobium sp. M7A.F.Ca.CA.001.11.2.1 Isolate Nodule
50 2906401398 Mesorhizobium sp. M7A.F.Ca.CA.004.10.1.1 Isolate Nodule
51 2922151315 Mesorhizobium sp. M7A.F.Ca.US.007.01.2.1 Isolate Nodule
52 2922158528 Mesorhizobium sp. M1A.F.Ca.IN.022.05.2.1 Isolate Nodule
53 2924710171 Mesorhizobium sp. M7A.T.Ca.TU.009.01.3.2 Isolate Nodule
54 2924726620 Mesorhizobium sp. M1A.F.Ca.IN.020.03.2.1 Isolate Nodule
55 2924741084 Mesorhizobium sp. M7A.F.Ca.CA.004.09.1.2 Isolate Nodule
56 2924762789 Mesorhizobium sp. WSM4303 Isolate Unclassified
57 2924776078 Mesorhizobium sp. M8A.F.Ca.ET.213.01.1.1 Isolate Nodule
58 2937813078 Mesorhizobium sp. M2D.F.Ca.ET.223.01.1.1 Isolate Nodule
59 2937822353 Mesorhizobium neociceri CCANP35 Isolate Nodule
60 2937861824 Mesorhizobium sp. M7A.F.Ca.CA.001.07.2.1 Isolate Nodule
61 2937868953 Mesorhizobium sp. M7A.F.Ca.CA.001.13.2.1 Isolate Nodule
62 2937877337 Mesorhizobium sp. M8A.F.Ca.ET.161.01.1.1 Isolate Nodule
63 2937891427 Mesorhizobium sp. M1A.F.Ca.IN.022.07.1.1 Isolate Nodule
64 2937980651 Mesorhizobium sp. M7A.F.Ca.CA.004.04.2.1 Isolate Nodule
65 2958084443 Mesorhizobium sp. M8A.F.Ca.ET.142.01.1.1 Isolate Nodule
66 2958092219 Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 Isolate Nodule
67 2958108152 Mesorhizobium sp. M7A.F.Ca.CA.004.11.1.1 Isolate Nodule
68 2958115193 Mesorhizobium sp. M00.F.Ca.ET.217.01.1.1 Isolate Nodule
69 2958130278 Mesorhizobium sp. M2D.F.Ca.ET.148.01.1.1 Isolate Nodule
70 2958144490 Mesorhizobium sp. M8A.F.Ca.ET.021.01.1.1 Isolate Nodule
71 2958179912 Mesorhizobium sp. M2D.F.Ca.ET.171.01.1.1 Isolate Nodule
72 2961077736 Mesorhizobium sp. M2D.F.Ca.ET.178.01.1.1 Isolate Nodule
73 2961183825 Mesorhizobium sp. M7A.F.Ca.CA.001.12.1.1 Isolate Nodule
74 2965040258 Mesorhizobium sp. M7A.F.Ca.CA.001.06.1.1 Isolate Nodule
75 2965062239 Mesorhizobium sp. M1A.F.Ca.ET.072.01.1.1 Isolate Nodule
76 2965089291 Mesorhizobium sp. M7A.F.Ca.CA.001.04.1.1 Isolate Nodule
77 2965110997 Mesorhizobium sp. M7A.F.Ca.US.003.02.2.1 Isolate Nodule
78 2968091066 Mesorhizobium sp. AA23 Isolate Unclassified
79 2968138860 Mesorhizobium sp. M7A.F.Ca.ET.027.03.2.1 Isolate Nodule
80 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
81 2970532167 Mesorhizobium sp. M7A.F.Ca.CA.002.05.1.1 Isolate Nodule
82 2970619444 Mesorhizobium sp. M7A.F.Ca.ET.027.02.1.1 Isolate Nodule
83 2970627176 Mesorhizobium sp. M7A.F.Ca.US.006.01.2.1 Isolate Nodule
84 2977843712 Mesorhizobium sp. M2D.F.Ca.ET.140.01.1.1 Isolate Nodule
85 2977851361 Mesorhizobium sp. M7A.F.Ca.CA.004.06.2.1 Isolate Nodule
86 2977898635 Mesorhizobium sp. M7A.T.Ca.TU.009.01.3.1 Isolate Nodule
87 2977907340 Mesorhizobium sp. M7A.F.Ca.CA.004.12.1.1 Isolate Nodule
88 2977915119 Mesorhizobium sp. M7A.F.Ca.CA.001.09.2.1 Isolate Nodule
89 2977922695 Mesorhizobium sp. WSM4305 Isolate Unclassified
90 2977942078 Mesorhizobium sp. M2E.F.Ca.ET.209.01.1.1 Isolate Nodule
91 2977950692 Mesorhizobium sp. M7A.F.Ca.CA.001.04.2.1 Isolate Nodule
92 2977957713 Mesorhizobium sp. M7A.F.Ca.US.001.02.1.1 Isolate Nodule
93 2977986579 Mesorhizobium intechi BD68 Isolate Unclassified
94 2979764755 Mesorhizobium sp. M7A.F.Ca.CA.004.05.2.1 Isolate Nodule
95 2979772303 Mesorhizobium sp. M7A.F.Ca.CA.004.04.1.1 Isolate Nodule
96 2979779861 Mesorhizobium sp. M1A.F.Ca.IN.022.02.1.1 Isolate Nodule
97 2987636660 Mesorhizobium sp. M2E.F.Ca.ET.154.01.1.1 Isolate Nodule
98 2987652177 Mesorhizobium sp. M2A.F.Ca.ET.042.01.1.1 Isolate Nodule
99 2987666974 Mesorhizobium sp. WSM4306 Isolate Unclassified
100 2987673487 Mesorhizobium sp. M7A.F.Ca.US.003.02.1.1 Isolate Nodule
101 2996341866 Mesorhizobium sp. M1A.F.Ca.IN.020.32.1.1 Isolate Nodule
102 2996386984 Mesorhizobium sp. M7A.F.Ca.MR.245.00.0.0 Isolate Nodule
103 3004167301 Mesorhizobium loti 582 Isolate Unclassified
104 3004203850 Mesorhizobium sp. M2E.F.Ca.ET.219.01.1.1 Isolate Nodule
105 3004248173 Mesorhizobium sp. M7A.F.Ca.CA.004.06.1.1 Isolate Nodule
106 3004334049 Mesorhizobium huakuii 583 Isolate Unclassified
107 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
108 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
109 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
110 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
111 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
112 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
113 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
114 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
115 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
116 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
117 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
118 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
119 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
120 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
121 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
122 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
123 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
124 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
125 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
126 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
127 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
128 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
129 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
130 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
131 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
132 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
133 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
134 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
135 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
136 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
137 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
138 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
139 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
140 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
141 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
142 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
143 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
144 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
145 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
146 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
147 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
148 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
149 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
150 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
151 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
152 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
153 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
154 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
155 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
156 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
157 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
158 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
159 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
160 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
161 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
162 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
163 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
164 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
165 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
166 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
167 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
168 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
169 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
170 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
171 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
172 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
173 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
174 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
175 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
176 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
177 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
178 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
179 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
180 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
181 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
182 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
183 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
184 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
185 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
186 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
187 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
188 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
189 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
190 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
191 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
192 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
193 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
194 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
195 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
196 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
197 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
198 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
199 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
200 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
201 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
202 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
203 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
204 649633066 Mesorhizobium ciceri bv. biserrulae WSM1271 Isolate Nodule
205 8004312739 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Isolate Nodule
206 8004361976 Mesorhizobium sp. M7A.F.Ca.CA.001.08.1.1 Isolate Nodule
207 8004387939 Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 Isolate Nodule
208 8004703790 Mesorhizobium sp. M00.F.Ca.ET.158.01.1.1 Isolate Nodule
209 8004714634 Mesorhizobium sp. M2D.F.Ca.ET.153.01.1.1 Isolate Nodule
210 8004727605 Mesorhizobium sp. M7A.F.Ca.CA.004.01.1.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 55.08
Metatranscriptomes 0
Isolates 44.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.59
Nodule 39.84
Rhizoplane 0.78
Rhizosphere 41.41
Stem 0
Stem Tuber 0
Unclassified 9.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10041592 3300001979 Bacteria 1383
2 JGI24740J21852_10105062 3300001979 Bacteria 716
3 JGI24739J22299_10003343 3300001989 Bacteria 6118
4 JGI24735J21928_10006617 3300002067 Bacteria 3808
5 rootL2_10037922 3300003322 Bacteria 1081
6 rootH1_10182216 3300003323 Bacteria 4051
7 Ga0065165_1004086 3300005262 Bacteria 9446
8 Ga0070658_10019983 3300005327 Bacteria 5364
9 Ga0070658_10184970 3300005327 Bacteria 1754
10 Ga0070660_100063748 3300005339 Bacteria 2865
11 Ga0070660_100170427 3300005339 Bacteria 1758
12 Ga0070714_100062479 3300005435 Unclassified 3201
13 Ga0070713_100483019 3300005436 Bacteria 1167
14 Ga0070711_100260492 3300005439 Bacteria 1364
15 Ga0070711_100473186 3300005439 Bacteria 1029
16 Ga0070679_100394496 3300005530 Bacteria 1330
17 Ga0068853_100694701 3300005539 Bacteria 970
18 Ga0070665_100060046 3300005548 Bacteria 3811
19 Ga0068855_100107098 3300005563 Bacteria 3212
20 Ga0068855_100160953 3300005563 Bacteria 2548
21 Ga0068857_100080133 3300005577 Bacteria 2916
22 Ga0068857_100468425 3300005577 Bacteria 1180
23 Ga0068856_100103571 3300005614 Bacteria 2840
24 Ga0068856_100120495 3300005614 Bacteria 2625
25 Ga0068852_100615714 3300005616 Bacteria 1091
26 Ga0070717_10094667 3300006028 Bacteria 2527
27 Ga0070717_10173250 3300006028 Unclassified 1878
28 Ga0075365_10080049 3300006038 Bacteria 2211
29 Ga0075368_10010461 3300006042 Bacteria 3353
30 Ga0075363_100029472 3300006048 Bacteria 2834
31 Ga0075364_10025037 3300006051 Bacteria 3795
32 Ga0075364_10173035 3300006051 Bacteria 1460
33 Ga0075367_10099449 3300006178 Bacteria 1777
34 Ga0075369_10209103 3300006186 Bacteria 902
35 Ga0075370_10077191 3300006353 Bacteria 1911
36 Ga0075370_10577800 3300006353 Bacteria 680
37 Ga0099795_10026485 3300007788 Bacteria 1953
38 Ga0105240_10172436 3300009093 Bacteria 2560
39 Ga0105238_10152352 3300009551 Bacteria 2287
40 Ga0105239_10007316 3300010375 Bacteria 12673
41 Ga0105239_10040501 3300010375 Bacteria 5104
42 Ga0105246_10288615 3300011119 Bacteria 1319
43 Ga0157370_10090326 3300013104 Bacteria 2876
44 Ga0157370_10383843 3300013104 Bacteria 1294
45 Ga0157369_10205692 3300013105 Bacteria 2065
46 Ga0157369_10547210 3300013105 Bacteria 1196
47 Ga0157375_10118267 3300013308 Bacteria 2756
48 Ga0213871_10020762 3300021441 Unclassified 1631
49 Ga0207647_10396147 3300025904 Bacteria 778
50 Ga0207705_10043305 3300025909 Bacteria 3234
51 Ga0207671_10299181 3300025914 Bacteria 1271
52 Ga0207693_10037717 3300025915 Bacteria 3808
53 Ga0207663_10087398 3300025916 Bacteria 2058
54 Ga0207663_10295762 3300025916 Unclassified 1208
55 Ga0207663_10391203 3300025916 Bacteria 1061
56 Ga0207660_10220423 3300025917 Bacteria 1488
57 Ga0207657_10062673 3300025919 Bacteria 3182
58 Ga0207652_10774128 3300025921 Bacteria 853
59 Ga0207694_10123498 3300025924 Bacteria 2069
60 Ga0207664_10652180 3300025929 Bacteria 946
61 Ga0207704_10356941 3300025938 Bacteria 1140
62 Ga0207667_10026872 3300025949 Bacteria 6280
63 Ga0207667_10234455 3300025949 Bacteria 1879
64 Ga0207702_10344975 3300026078 Bacteria 1423
65 Ga0207702_10549336 3300026078 Bacteria 1130
66 Ga0207698_10250342 3300026142 Bacteria 1621
67 Ga0209813_10082607 3300027866 Bacteria 1065
68 Ga0268266_10667605 3300028379 Bacteria 1001
69 Ga0373934_0059452 3300035086 Bacteria 1521
70 Ga0373934_0115582 3300035086 Bacteria 1090
71 Ga0373954_0070177 3300035118 Unclassified 1664
72 Ga0373954_0160012 3300035118 Unclassified 1101
73 Ga0373956_0077813 3300035119 Bacteria 1519
74 Ga0373957_0285676 3300035120 Unclassified 698
75 Ga0373955_0083539 3300035172 Bacteria 1809
76 Ga0373933_0061664 3300035724 Bacteria 2263
77 Ga0373933_0087923 3300035724 Bacteria 1914
78 Ga0373933_0206361 3300035724 Bacteria 1258
79 Ga0373937_0015040 3300036401 Bacteria 6835
80 Ga0373937_0024893 3300036401 Bacteria 5402
81 Ga0373937_0053825 3300036401 Bacteria 3691
82 Ga0373937_0349029 3300036401 Unclassified 1401
83 Ga0395898_0587675 3300037466 Bacteria 1056
84 Ga0436364_0064708 3300037853 Bacteria 6263
85 Ga0436364_0624838 3300037853 Unclassified 2284
86 Ga0436364_1151482 3300037853 Unclassified 578
87 Ga0436364_1188708 3300037853 Bacteria 2170
88 Ga0436365_0469310 3300039437 Archaea 1765
89 Ga0436365_0848238 3300039437 Unclassified 1146
90 Ga0436365_1496264 3300039437 Bacteria 943
91 Ga0436365_1635780 3300039437 Bacteria 2471
92 Ga0436360_0577023 3300039438 Unclassified 1152
93 Ga0436360_0783378 3300039438 Bacteria 1347
94 Ga0436360_1030813 3300039438 Bacteria 1696
95 Ga0436360_1322087 3300039438 Bacteria 1385
96 Ga0436363_0925863 3300039450 Bacteria 1480
97 Ga0436363_1030853 3300039450 Unclassified 885
98 Ga0436362_1289032 3300039453 Unclassified 820
99 Ga0451807_0504085 3300041486 Bacteria 1075
100 Ga0466972_0029693 3300044658 Bacteria 2692
101 Ga0466972_0121024 3300044658 Bacteria 1234
102 Ga0466970_0428601 3300044765 Bacteria 757
103 Ga0466960_0171417 3300044901 Bacteria 1171
104 Ga0466967_0523861 3300045976 Bacteria 1165
105 Ga0495610_0047482 3300046512 Bacteria 2112
106 Ga0495620_0022911 3300046515 Bacteria 2996
107 Ga0495637_0118120 3300046520 Bacteria 1023
108 Ga0495643_0084477 3300046522 Bacteria 1647
109 Ga0495640_0237402 3300046533 Bacteria 1145
110 Ga0495587_0133039 3300046536 Bacteria 1421
111 Ga0495645_0614155 3300046543 Unclassified 668
112 Ga0495625_0033861 3300046660 Bacteria 3774
113 Ga0495625_0114281 3300046660 Bacteria 1843
114 Ga0495625_0401408 3300046660 Bacteria 856
115 Ga0495599_0478359 3300046678 Bacteria 735
116 Ga0495660_0124517 3300046810 Bacteria 1300
117 Ga0496102_1116405 3300048905 Bacteria 708
118 Ga0496125_0137150 3300048928 Bacteria 1709
119 Ga0501033_0497609 3300049570 Bacteria 843
120 Ga0501034_0202996 3300049571 Bacteria 1940
121 Ga0501038_0301876 3300049574 Bacteria 1256
122 Ga0501070_0462663 3300049586 Unclassified 1022
123 Ga0501035_0031553 3300049822 Bacteria 4825
124 Ga0501035_0119069 3300049822 Bacteria 2310
125 Ga0501035_0236618 3300049822 Bacteria 1555
126 Ga0501044_0784599 3300049823 Bacteria 833
127 Ga0501044_0865631 3300049823 Bacteria 780
128 nmdc:mga00v17_30835_c1 3300050491 Bacteria 3157
129 nmdc:mga0yw44_278516_c1 3300050492 Bacteria 1118
130 nmdc:mga06z11_20240_c1 3300050494 Bacteria 3073
131 nmdc:mga04h51_30386_c1 3300050495 Bacteria 1699
132 nmdc:mga04h51_97858_c1 3300050495 Bacteria 1065
133 nmdc:mga07m45_531888_c1 3300050496 Bacteria 680
134 nmdc:mga07m45_97962_c1 3300050496 Bacteria 1683
135 Ga0500610_0089664 3300053079 Bacteria 1598
136 Ga0495655_0012031 3300053083 Bacteria 1754
137 Ga0495655_0038016 3300053083 Bacteria 1212
138 Ga0495619_0136987 3300053085 Bacteria 1684
139 Ga0500604_0035643 3300053151 Bacteria 1481
140 Ga0500604_0067306 3300053151 Bacteria 1136
141 Ga0500627_0145866 3300053158 Bacteria 1069

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2687453392 2688595230 174
2 iso_pu_bacteria 2869249662 2869253625 174
3 iso_pu_bacteria 2869264136 2869267295 174
4 iso_pu_bacteria 2871459585 2871461849 174
5 iso_pu_bacteria 2906363423 2906367708 174
6 iso_pu_bacteria 2906370794 2906371729 174
7 iso_pu_bacteria 2906393657 2906397733 174
8 iso_pu_bacteria 8004361976 8004368306 176
9 iso_pu_bacteria 2906328253 2906335515 177
10 3300039438 Ga0436360_1322087 Ga0436360_1322087_474_1055 178
11 iso_pu_bacteria 2977898635 2977902682 179
12 3300025915 Ga0207693_10037717 Ga0207693_100377174 181
13 3300025916 Ga0207663_10087398 Ga0207663_100873983 181
14 3300025929 Ga0207664_10652180 Ga0207664_106521801 181
15 3300037853 Ga0436364_1151482 Ga0436364_1151482_11_565 181
16 3300049823 Ga0501044_0865631 Ga0501044_0865631_26_571 181
17 3300046522 Ga0495643_0084477 Ga0495643_0084477_25_576 183
18 3300046660 Ga0495625_0114281 Ga0495625_0114281_1278_1829 183
19 iso_pu_bacteria 2856334872 2856335653 184
20 iso_pu_bacteria 2878781027 2878785602 184
21 iso_pu_bacteria 2922151315 2922154843 184
22 iso_pu_bacteria 2965110997 2965116333 184
23 iso_pu_bacteria 2987673487 2987676499 184
24 iso_pu_bacteria 2756170246 2756677604 185
25 3300021441 Ga0213871_10020762 Ga0213871_100207622 188
26 3300039438 Ga0436360_0577023 Ga0436360_0577023_264_839 188
27 3300039438 Ga0436360_1030813 Ga0436360_1030813_1089_1664 188
28 3300039453 Ga0436362_1289032 Ga0436362_1289032_62_637 188
29 3300005435 Ga0070714_100062479 Ga0070714_1000624792 189
30 3300005436 Ga0070713_100483019 Ga0070713_1004830191 189
31 3300005439 Ga0070711_100260492 Ga0070711_1002604921 189
32 3300005439 Ga0070711_100473186 Ga0070711_1004731862 189
33 3300006028 Ga0070717_10094667 Ga0070717_100946673 189
34 3300006028 Ga0070717_10173250 Ga0070717_101732503 189
35 3300007788 Ga0099795_10026485 Ga0099795_100264853 189
36 3300025916 Ga0207663_10295762 Ga0207663_102957622 189
37 3300025916 Ga0207663_10391203 Ga0207663_103912032 189
38 3300035086 Ga0373934_0059452 Ga0373934_0059452_16_594 189
39 3300035086 Ga0373934_0115582 Ga0373934_0115582_55_633 189
40 3300035118 Ga0373954_0070177 Ga0373954_0070177_142_720 189
41 3300035118 Ga0373954_0160012 Ga0373954_0160012_127_759 189
42 3300035119 Ga0373956_0077813 Ga0373956_0077813_674_1252 189
43 3300035120 Ga0373957_0285676 Ga0373957_0285676_24_602 189
44 3300035172 Ga0373955_0083539 Ga0373955_0083539_516_1094 189
45 3300035724 Ga0373933_0087923 Ga0373933_0087923_572_1150 189
46 3300035724 Ga0373933_0206361 Ga0373933_0206361_297_875 189
47 3300036401 Ga0373937_0024893 Ga0373937_0024893_485_1063 189
48 3300036401 Ga0373937_0053825 Ga0373937_0053825_1657_2235 189
49 3300036401 Ga0373937_0349029 Ga0373937_0349029_103_681 189
50 3300037853 Ga0436364_0624838 Ga0436364_0624838_262_840 189
51 3300037853 Ga0436364_1188708 Ga0436364_1188708_1550_2146 189
52 3300039437 Ga0436365_0469310 Ga0436365_0469310_1057_1635 189
53 3300039437 Ga0436365_0848238 Ga0436365_0848238_522_1100 189
54 3300039437 Ga0436365_1496264 Ga0436365_1496264_343_927 189
55 3300039437 Ga0436365_1635780 Ga0436365_1635780_1097_1675 189
56 3300039450 Ga0436363_0925863 Ga0436363_0925863_781_1359 189
57 3300039450 Ga0436363_1030853 Ga0436363_1030853_114_692 189
58 3300046533 Ga0495640_0237402 Ga0495640_0237402_169_747 189
59 3300046536 Ga0495587_0133039 Ga0495587_0133039_618_1196 189
60 3300046543 Ga0495645_0614155 Ga0495645_0614155_52_630 189
61 3300046678 Ga0495599_0478359 Ga0495599_0478359_66_644 189
62 3300053085 Ga0495619_0136987 Ga0495619_0136987_782_1360 189
63 iso_pu_bacteria 2937877337 2937880321 189
64 iso_pu_bacteria 2958084443 2958087457 189
65 3300039438 Ga0436360_0783378 Ga0436360_0783378_487_1068 190
66 3300013308 Ga0157375_10118267 Ga0157375_101182675 193
67 3300025938 Ga0207704_10356941 Ga0207704_103569412 193
68 iso_pu_bacteria 2508501123 2509118372 193
69 iso_pu_bacteria 2513237090 2513612017 193
70 iso_pu_bacteria 2513237138 2513871978 193
71 iso_pu_bacteria 2643221627 2644153825 193
72 iso_pu_bacteria 2693429783 2694632026 193
73 iso_pu_bacteria 2693429784 2694634567 193
74 iso_pu_bacteria 2791355123 2792750323 193
75 iso_pu_bacteria 2844009547 2844009822 193
76 iso_pu_bacteria 2847686936 2847688244 193
77 iso_pu_bacteria 2856320880 2856325036 193
78 iso_pu_bacteria 2856364286 2856371513 193
79 iso_pu_bacteria 2857349434 2857355770 193
80 iso_pu_bacteria 2857367948 2857374639 193
81 iso_pu_bacteria 2857367948 2857374879 193
82 iso_pu_bacteria 2869169390 2869176611 193
83 iso_pu_bacteria 2869242130 2869248212 193
84 iso_pu_bacteria 2869256925 2869257538 193
85 iso_pu_bacteria 2869285874 2869289565 193
86 iso_pu_bacteria 2871429161 2871431632 193
87 iso_pu_bacteria 2871435913 2871441899 193
88 iso_pu_bacteria 2871444079 2871444907 193
89 iso_pu_bacteria 2871451962 2871459393 193
90 iso_pu_bacteria 2871481445 2871482570 193
91 iso_pu_bacteria 2874102143 2874105544 193
92 iso_pu_bacteria 2874116593 2874119933 193
93 iso_pu_bacteria 2874146452 2874154772 193
94 iso_pu_bacteria 2874155637 2874162154 193
95 iso_pu_bacteria 2876386047 2876392124 193
96 iso_pu_bacteria 2876413966 2876420338 193
97 iso_pu_bacteria 2876420981 2876423395 193
98 iso_pu_bacteria 2878738818 2878739493 193
99 iso_pu_bacteria 2878745973 2878748237 193
100 iso_pu_bacteria 2888337043 2888341694 193
101 iso_pu_bacteria 2889010040 2889011765 193
102 iso_pu_bacteria 2903492973 2903493093 193
103 iso_pu_bacteria 2906308376 2906311854 193
104 iso_pu_bacteria 2906321335 2906323592 193
105 iso_pu_bacteria 2906401398 2906406489 193
106 iso_pu_bacteria 2922158528 2922159962 193
107 iso_pu_bacteria 2924710171 2924712611 193
108 iso_pu_bacteria 2924726620 2924729018 193
109 iso_pu_bacteria 2924741084 2924743801 193
110 iso_pu_bacteria 2924776078 2924777017 193
111 iso_pu_bacteria 2937813078 2937818326 193
112 iso_pu_bacteria 2937861824 2937861971 193
113 iso_pu_bacteria 2937868953 2937876977 193
114 iso_pu_bacteria 2937891427 2937898356 193
115 iso_pu_bacteria 2937980651 2937981057 193
116 iso_pu_bacteria 2958092219 2958095298 193
117 iso_pu_bacteria 2958108152 2958111814 193
118 iso_pu_bacteria 2958115193 2958116793 193
119 iso_pu_bacteria 2958130278 2958133939 193
120 iso_pu_bacteria 2958144490 2958151367 193
121 iso_pu_bacteria 2958179912 2958183585 193
122 iso_pu_bacteria 2961077736 2961081551 193
123 iso_pu_bacteria 2961183825 2961185258 193
124 iso_pu_bacteria 2965040258 2965045035 193
125 iso_pu_bacteria 2965062239 2965069836 193
126 iso_pu_bacteria 2965089291 2965092763 193
127 iso_pu_bacteria 2968091066 2968092220 193
128 iso_pu_bacteria 2968138860 2968139685 193
129 iso_pu_bacteria 2970489779 2970489942 193
130 iso_pu_bacteria 2970532167 2970537333 193
131 iso_pu_bacteria 2970619444 2970621375 193
132 iso_pu_bacteria 2970627176 2970629770 193
133 iso_pu_bacteria 2977843712 2977850922 193
134 iso_pu_bacteria 2977851361 2977856737 193
135 iso_pu_bacteria 2977907340 2977908866 193
136 iso_pu_bacteria 2977915119 2977921704 193
137 iso_pu_bacteria 2977922695 2977928498 193
138 iso_pu_bacteria 2977942078 2977944433 193
139 iso_pu_bacteria 2977950692 2977955804 193
140 iso_pu_bacteria 2977957713 2977964766 193
141 iso_pu_bacteria 2979764755 2979769976 193
142 iso_pu_bacteria 2979772303 2979773247 193
143 iso_pu_bacteria 2979779861 2979780901 193
144 iso_pu_bacteria 2987636660 2987640904 193
145 iso_pu_bacteria 2987652177 2987653071 193
146 iso_pu_bacteria 2996341866 2996348553 193
147 iso_pu_bacteria 2996386984 2996393928 193
148 iso_pu_bacteria 3004167301 3004169967 193
149 iso_pu_bacteria 3004203850 3004209101 193
150 iso_pu_bacteria 3004248173 3004254040 193
151 iso_pu_bacteria 3004334049 3004341189 193
152 iso_pu_bacteria 649633066 649864722 193
153 iso_pu_bacteria 8004312739 8004316294 193
154 iso_pu_bacteria 8004387939 8004391444 193
155 iso_pu_bacteria 8004703790 8004710675 193
156 iso_pu_bacteria 8004714634 8004716813 193
157 iso_pu_bacteria 8004727605 8004730205 193
158 3300037853 Ga0436364_0064708 Ga0436364_0064708_1245_1871 195
159 iso_pu_bacteria 2512875024 2512959824 195
160 iso_pu_bacteria 2513237164 2514036146 195
161 iso_pu_bacteria 2924762789 2924767118 195
162 iso_pu_bacteria 2937822353 2937825849 195
163 iso_pu_bacteria 2977986579 2977988832 195
164 iso_pu_bacteria 2987666974 2987671137 195
165 3300001979 JGI24740J21852_10105062 JGI24740J21852_101050621 197
166 3300001989 JGI24739J22299_10003343 JGI24739J22299_1000334312 197
167 3300002067 JGI24735J21928_10006617 JGI24735J21928_1000661711 197
168 3300003322 rootL2_10037922 rootL2_100379222 197
169 3300005262 Ga0065165_1004086 Ga0065165_10040863 197
170 3300005563 Ga0068855_100107098 Ga0068855_1001070988 197
171 3300005614 Ga0068856_100103571 Ga0068856_1001035714 197
172 3300006178 Ga0075367_10099449 Ga0075367_100994492 197
173 3300006353 Ga0075370_10577800 Ga0075370_105778001 197
174 3300010375 Ga0105239_10007316 Ga0105239_1000731619 197
175 3300013105 Ga0157369_10547210 Ga0157369_105472101 197
176 3300025904 Ga0207647_10396147 Ga0207647_103961471 197
177 3300025914 Ga0207671_10299181 Ga0207671_102991812 197
178 3300025949 Ga0207667_10234455 Ga0207667_102344552 197
179 3300026078 Ga0207702_10549336 Ga0207702_105493362 197
180 3300027866 Ga0209813_10082607 Ga0209813_100826072 197
181 3300037466 Ga0395898_0587675 Ga0395898_0587675_255_848 197
182 3300041486 Ga0451807_0504085 Ga0451807_0504085_336_929 197
183 3300044658 Ga0466972_0029693 Ga0466972_0029693_1237_1830 197
184 3300044658 Ga0466972_0121024 Ga0466972_0121024_29_622 197
185 3300044901 Ga0466960_0171417 Ga0466960_0171417_534_1127 197
186 3300045976 Ga0466967_0523861 Ga0466967_0523861_252_860 197
187 3300046660 Ga0495625_0033861 Ga0495625_0033861_3146_3739 197
188 3300046660 Ga0495625_0401408 Ga0495625_0401408_22_615 197
189 3300048905 Ga0496102_1116405 Ga0496102_1116405_47_640 197
190 3300049570 Ga0501033_0497609 Ga0501033_0497609_15_608 197
191 3300049571 Ga0501034_0202996 Ga0501034_0202996_197_790 197
192 3300049574 Ga0501038_0301876 Ga0501038_0301876_617_1210 197
193 3300049586 Ga0501070_0462663 Ga0501070_0462663_110_703 197
194 3300049822 Ga0501035_0031553 Ga0501035_0031553_1789_2382 197
195 3300049822 Ga0501035_0119069 Ga0501035_0119069_1234_1827 197
196 3300049822 Ga0501035_0236618 Ga0501035_0236618_599_1192 197
197 3300049823 Ga0501044_0784599 Ga0501044_0784599_87_701 197
198 3300050494 nmdc:mga06z11_20240_c1 nmdc:mga06z11_20240_c1_91_684 197
199 3300050495 nmdc:mga04h51_97858_c1 nmdc:mga04h51_97858_c1_180_773 197
200 3300050496 nmdc:mga07m45_531888_c1 nmdc:mga07m45_531888_c1_53_646 197
201 3300053083 Ga0495655_0038016 Ga0495655_0038016_116_709 197
202 iso_pu_bacteria 3004334049 3004340561 197
203 3300005327 Ga0070658_10184970 Ga0070658_101849701 198
204 3300005339 Ga0070660_100170427 Ga0070660_1001704271 198
205 3300005530 Ga0070679_100394496 Ga0070679_1003944961 198
206 3300005577 Ga0068857_100080133 Ga0068857_1000801332 198
207 3300013104 Ga0157370_10090326 Ga0157370_100903263 198
208 3300013105 Ga0157369_10205692 Ga0157369_102056923 198
209 3300025917 Ga0207660_10220423 Ga0207660_102204233 198
210 3300025921 Ga0207652_10774128 Ga0207652_107741281 198
211 3300035724 Ga0373933_0061664 Ga0373933_0061664_1165_1773 198
212 3300036401 Ga0373937_0015040 Ga0373937_0015040_2213_2821 198
213 3300044765 Ga0466970_0428601 Ga0466970_0428601_109_714 198
214 3300053151 Ga0500604_0035643 Ga0500604_0035643_756_1355 198
215 3300001979 JGI24740J21852_10041592 JGI24740J21852_100415921 199
216 3300003323 rootH1_10182216 rootH1_101822164 199
217 3300005327 Ga0070658_10019983 Ga0070658_100199836 199
218 3300005339 Ga0070660_100063748 Ga0070660_1000637483 199
219 3300005539 Ga0068853_100694701 Ga0068853_1006947012 199
220 3300005548 Ga0070665_100060046 Ga0070665_1000600465 199
221 3300005563 Ga0068855_100160953 Ga0068855_1001609534 199
222 3300005577 Ga0068857_100468425 Ga0068857_1004684251 199
223 3300005614 Ga0068856_100120495 Ga0068856_1001204951 199
224 3300005616 Ga0068852_100615714 Ga0068852_1006157141 199
225 3300006038 Ga0075365_10080049 Ga0075365_100800494 199
226 3300006042 Ga0075368_10010461 Ga0075368_100104612 199
227 3300006048 Ga0075363_100029472 Ga0075363_1000294722 199
228 3300006051 Ga0075364_10025037 Ga0075364_100250374 199
229 3300006051 Ga0075364_10173035 Ga0075364_101730353 199
230 3300006186 Ga0075369_10209103 Ga0075369_102091031 199
231 3300006353 Ga0075370_10077191 Ga0075370_100771914 199
232 3300009093 Ga0105240_10172436 Ga0105240_101724362 199
233 3300009551 Ga0105238_10152352 Ga0105238_101523523 199
234 3300010375 Ga0105239_10040501 Ga0105239_100405015 199
235 3300011119 Ga0105246_10288615 Ga0105246_102886153 199
236 3300013104 Ga0157370_10383843 Ga0157370_103838431 199
237 3300025909 Ga0207705_10043305 Ga0207705_100433055 199
238 3300025919 Ga0207657_10062673 Ga0207657_100626732 199
239 3300025924 Ga0207694_10123498 Ga0207694_101234982 199
240 3300025949 Ga0207667_10026872 Ga0207667_100268726 199
241 3300026078 Ga0207702_10344975 Ga0207702_103449753 199
242 3300026142 Ga0207698_10250342 Ga0207698_102503423 199
243 3300028379 Ga0268266_10667605 Ga0268266_106676052 199
244 3300046512 Ga0495610_0047482 Ga0495610_0047482_663_1262 199
245 3300046515 Ga0495620_0022911 Ga0495620_0022911_74_673 199
246 3300046520 Ga0495637_0118120 Ga0495637_0118120_331_930 199
247 3300046810 Ga0495660_0124517 Ga0495660_0124517_526_1125 199
248 3300048928 Ga0496125_0137150 Ga0496125_0137150_409_1008 199
249 3300050491 nmdc:mga00v17_30835_c1 nmdc:mga00v17_30835_c1_863_1462 199
250 3300050492 nmdc:mga0yw44_278516_c1 nmdc:mga0yw44_278516_c1_302_901 199
251 3300050495 nmdc:mga04h51_30386_c1 nmdc:mga04h51_30386_c1_75_674 199
252 3300050496 nmdc:mga07m45_97962_c1 nmdc:mga07m45_97962_c1_156_755 199
253 3300053079 Ga0500610_0089664 Ga0500610_0089664_811_1410 199
254 3300053083 Ga0495655_0012031 Ga0495655_0012031_302_901 199
255 3300053151 Ga0500604_0067306 Ga0500604_0067306_94_693 199
256 3300053158 Ga0500627_0145866 Ga0500627_0145866_182_781 199

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02586

SRAP

SOS response associated peptidase (SRAP)

9

215

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
6kbz-assembly2.cif.gz_D crystal structure of yedk with ssdna containing a tetrahydrofuran abasic site 0.7736 2 194
8d2m-assembly1.cif.gz_A covalent schiff base complex of yedk c2a and abasic dna 0.7702 2 194
6kbz-assembly4.cif.gz_H crystal structure of yedk with ssdna containing a tetrahydrofuran abasic site 0.7669 2 194
8d2m-assembly2.cif.gz_B covalent schiff base complex of yedk c2a and abasic dna 0.7634 2 194
6kbu-assembly2.cif.gz_A crystal structure of yedk 0.7515 2 194
ID Description Score Start End Superfamily
2icuA00 Alpha Beta;Alpha-Beta Complex;hypothetical protein yedk fold;SOS response associated peptidase-like 0.7562 4 194 3.90.1680.10
6nlcA00 Alpha Beta;Alpha-Beta Complex;hypothetical protein yedk fold;SOS response associated peptidase-like 0.7333 2 194 3.90.1680.10
af_I1KYZ5_1_237_3.90.1680.10 Alpha Beta;Alpha-Beta Complex;hypothetical protein yedk fold;SOS response associated peptidase-like 0.7325 1 194 3.90.1680.10
af_O05872_1_242_3.90.1680.10 Alpha Beta;Alpha-Beta Complex;hypothetical protein yedk fold;SOS response associated peptidase-like 0.7297 1 194 3.90.1680.10
2icuA00 Alpha Beta;Alpha-Beta Complex;hypothetical protein yedk fold;SOS response associated peptidase-like 0.715 4 194 3.90.1680.10
ID Description Score Start End GO Terms
AF-A0A436G4H7-F1-model_v4 SOS response-associated peptidase 0.9754 116 199 GO:0003697
GO:0106300
AF-A0A526VHR8-F1-model_v4 Abasic site processing protein (EC 3.4.-.-) 0.9696 89 199 GO:0003697
GO:0006508
GO:0008233
GO:0016829
GO:0106300
AF-A0A4S0ZGZ3-F1-model_v4 deleted 0.9636 1 199
AF-V7FL23-F1-model_v4 Abasic site processing protein (EC 3.4.-.-) 0.9636 1 199 GO:0003697
GO:0006508
GO:0008233
GO:0016829
GO:0106300
AF-A0A529Y3D4-F1-model_v4 SOS response-associated peptidase 0.9627 121 199 GO:0003697
GO:0106300

Feature Viewer

pLDDT pTM Quality
87.41 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar

Map