F365323

General Info

Members Datasets Scaffolds Average Seq Length
254 222 508 355

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8055617313|8055624903
Length 375
Sequence LNTGWLNSADGRGPMENNPALWLMLTALAVPAPALAGGVPVIDGANLTERTTRDEKTTEIEKVDKDRFSVNKSVTCSVYRPGRRDDPVAAANANPEIAGLVKRIAREEGINENEFLALVYQESRFNPCAKSGVGAIGLAQLMPGTAADLGVNPHNIEENLRGGAKYYRQQLRRFNGNVNLALAAYNSGHGNVQKYGGIPPFKETQGYVKNITQRWLPAFGGSDQANIPLNYGGGNTAYSGMRNSTINAMATSQAATDSVGNAASWLQQLGGMQSGTIQDSWDHNSGARNANLEMMNQVIRMGTAMGDLINSRNASTASNLSGTSQSSDFKDEDKKPRETAGLCDPREGLEWSPTEKACVQKRERAANVNLMLKPQ

Samples

Sample ID Description Type Environment
1 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
2 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
3 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
4 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
9 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
10 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
11 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
12 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
13 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
14 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
15 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
16 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
17 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
18 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
19 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
20 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
21 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
22 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
23 3300033464 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules Metagenome Nodule
24 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
25 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
26 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
27 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
28 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
29 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
30 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
31 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
32 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
33 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
34 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
35 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
36 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
37 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
38 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
39 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
40 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
41 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
42 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
43 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
44 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
45 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
46 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
47 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
48 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
49 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
50 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
51 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
52 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
53 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
54 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
55 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
56 8055617313 Mesorhizobium onobrychidis OM4 Isolate Nodule
57 2508501123 Mesorhizobium sp. WSM3626 Isolate Nodule
58 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
59 2512875026 Sinorhizobium medicae WSM1115 Isolate Nodule
60 2513237089 Sinorhizobium medicae DI28 Isolate Nodule
61 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
62 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
63 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
64 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
65 2516653046 Sinorhizobium meliloti BO21CC Isolate Nodule
66 2517487022 Sinorhizobium medicae WSM4191 Isolate Nodule
67 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
68 2551306084 Sinorhizobium meliloti 5A14 Isolate Nodule
69 2551306085 Sinorhizobium meliloti AE608H Isolate Nodule
70 2551306087 Sinorhizobium meliloti A0643DD Isolate Nodule
71 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
72 2551306090 Sinorhizobium meliloti A0641M Isolate Nodule
73 2551306092 Sinorhizobium meliloti AK75 Isolate Nodule
74 2551306093 Sinorhizobium meliloti C0438LL Isolate Nodule
75 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
76 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
77 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
78 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
79 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
80 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
81 2643221564 Mesorhizobium sp. Root157 Isolate Unclassified
82 2643221688 Rhizobium sp. Root482 Isolate Unclassified
83 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
84 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
85 2802428858 Sinorhizobium medicae M14-1 Isolate Nodule
86 2802428860 Sinorhizobium medicae M19-1 Isolate Nodule
87 2802428861 Sinorhizobium medicae USDA1037 Isolate Nodule
88 2802428862 Sinorhizobium medicae M7-4 Isolate Nodule
89 2802429606 Rhizobium sophoriradicis JJW1 Isolate Nodule
90 2802429637 Rhizobium anhuiense C15 Isolate Nodule
91 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
92 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
93 2842229732 Rhizobium leguminosarum SEMIA 481 Isolate Nodule
94 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
95 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
96 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
97 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
98 2856314179 Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 Isolate Nodule
99 2856342000 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Isolate Nodule
100 2871488783 Mesorhizobium sp. M4B.F.Ca.ET.203.01.1.1 Isolate Nodule
101 2871495908 Mesorhizobium sp. M1C.F.Ca.ET.193.01.1.1 Isolate Nodule
102 2876392853 Mesorhizobium sp. M1D.F.Ca.ET.234.01.1.1 Isolate Nodule
103 2878760144 Mesorhizobium sp. M1C.F.Ca.ET.192.01.1.1 Isolate Nodule
104 2878767105 Mesorhizobium sp. M1C.F.Ca.ET.144.01.1.1 Isolate Nodule
105 2878788777 Mesorhizobium sp. M6A.T.Ca.TU.002.02.2.1 Isolate Nodule
106 2881147464 Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 Isolate Nodule
107 2881853255 Mesorhizobium sp. M4A.F.Ca.ET.020.02.1.1 Isolate Nodule
108 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
109 2885305155 Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 Isolate Nodule
110 2903448605 Mesorhizobium japonicum Opo-235 Isolate Nodule
111 2903492973 Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 Isolate Nodule
112 2903540706 Mesorhizobium sp. M1C.F.Ca.ET.212.01.1.1 Isolate Nodule
113 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
114 2904659560 Mesorhizobium sp. M1D.F.Ca.ET.184.01.1.1 Isolate Nodule
115 2906414383 Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 Isolate Nodule
116 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
117 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
118 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
119 2915986958 Sinorhizobium meliloti USDA1659 Isolate Nodule
120 2916014648 Sinorhizobium meliloti USDA1583 Isolate Nodule
121 2916048683 Sinorhizobium meliloti USDA1796 Isolate Nodule
122 2916061851 Sinorhizobium medicae USDA1638 Isolate Nodule
123 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
124 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
125 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
126 2921250672 Sinorhizobium medicae USDA1169 Isolate Nodule
127 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
128 2921289301 Sinorhizobium meliloti USDA1730 Isolate Nodule
129 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
130 2922130491 Mesorhizobium sp. M00.F.Ca.ET.038.03.1.1 Isolate Nodule
131 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
132 2924158325 Sinorhizobium meliloti USDA1146 Isolate Nodule
133 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
134 2924186466 Sinorhizobium meliloti USDA1389 Isolate Nodule
135 2924214083 Sinorhizobium meliloti USDA1702 Isolate Nodule
136 2924784321 Mesorhizobium sp. M4B.F.Ca.ET.143.01.1.1 Isolate Nodule
137 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
138 2937002841 Sinorhizobium meliloti USDA1006 Isolate Nodule
139 2937036028 Sinorhizobium medicae USDA1608 Isolate Nodule
140 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
141 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
142 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
143 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
144 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
145 2937994558 Mesorhizobium sp. M1C.F.Ca.ET.187.01.1.1 Isolate Nodule
146 2957375807 Sinorhizobium medicae USDA1632 Isolate Nodule
147 2957415311 Sinorhizobium meliloti USDA1724 Isolate Nodule
148 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
149 2957450854 Sinorhizobium meliloti USDA1655 Isolate Nodule
150 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
151 2957491536 Sinorhizobium meliloti USDA1804 Isolate Nodule
152 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
153 2958064165 Mesorhizobium sp. SARCC-RB16n Isolate Unclassified
154 2958165035 Mesorhizobium sp. M1C.F.Ca.ET.196.01.1.1 Isolate Nodule
155 2960597568 Sinorhizobium meliloti 3085 Isolate Nodule
156 2960603979 Sinorhizobium meliloti USDA1580 Isolate Nodule
157 2960617483 Sinorhizobium meliloti USDA1719 Isolate Nodule
158 2960624210 Sinorhizobium meliloti USDA1415 Isolate Nodule
159 2960631154 Sinorhizobium medicae USDA1629 Isolate Nodule
160 2960645483 Sinorhizobium meliloti USDA1703 Isolate Nodule
161 2960660292 Sinorhizobium meliloti USDA1883 Isolate Nodule
162 2960667422 Sinorhizobium meliloti USDA1170 Isolate Nodule
163 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
164 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
165 2961114664 Mesorhizobium sp. M1D.F.Ca.ET.231.01.1.1 Isolate Nodule
166 2961163497 Mesorhizobium sp. M1C.F.Ca.ET.176.01.1.1 Isolate Nodule
167 2961170736 Mesorhizobium sp. M4B.F.Ca.ET.200.01.1.1 Isolate Nodule
168 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
169 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
170 2964643177 Sinorhizobium meliloti USDA1760 Isolate Nodule
171 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
172 2964712639 Sinorhizobium meliloti USDA1616 Isolate Nodule
173 2965018300 Mesorhizobium sp. M1C.F.Ca.ET.188.01.1.1 Isolate Nodule
174 2965062239 Mesorhizobium sp. M1A.F.Ca.ET.072.01.1.1 Isolate Nodule
175 2967671571 Sinorhizobium meliloti USDA1496 Isolate Nodule
176 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
177 2967693043 Sinorhizobium meliloti USDA1183 Isolate Nodule
178 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
179 2967721400 Sinorhizobium meliloti USDA1742 Isolate Nodule
180 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
181 2968003550 Mesorhizobium sp. M4B.F.Ca.ET.215.01.1.1 Isolate Nodule
182 2968083720 Mesorhizobium erdmanii Opo-242 Isolate Unclassified
183 2968097103 Mesorhizobium sp. M1A.F.Ca.IN.020.30.1.1 Isolate Nodule
184 2968110612 Mesorhizobium sp. M1D.F.Ca.ET.183.01.1.1 Isolate Nodule
185 2968171901 Mesorhizobium sp. M1C.F.Ca.ET.189.01.1.1 Isolate Nodule
186 2970019648 Sinorhizobium meliloti USDA1603 Isolate Nodule
187 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
188 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
189 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
190 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
191 2970076120 Sinorhizobium meliloti USDA1706 Isolate Nodule
192 2970129317 Sinorhizobium meliloti USDA1008 Isolate Nodule
193 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
194 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
195 2970177841 Sinorhizobium meliloti USDA1533 Isolate Nodule
196 2970191845 Sinorhizobium meliloti USDA1187 Isolate Nodule
197 2970503327 Mesorhizobium sp. M4B.F.Ca.ET.190.01.1.1 Isolate Nodule
198 2970554993 Mesorhizobium sp. M1C.F.Ca.ET.210.01.1.1 Isolate Nodule
199 2977516862 Sinorhizobium meliloti USDA1791 Isolate Nodule
200 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
201 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
202 2977544691 Sinorhizobium medicae USDA1631 Isolate Nodule
203 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
204 2977828996 Mesorhizobium sp. M4B.F.Ca.ET.089.01.1.1 Isolate Nodule
205 2977858184 Mesorhizobium sp. M1A.F.Ca.IN.020.03.1.1 Isolate Nodule
206 2977971508 Mesorhizobium sp. M2A.F.Ca.ET.039.01.1.1 Isolate Nodule
207 2979808191 Mesorhizobium sp. M4B.F.Ca.ET.172.01.1.1 Isolate Nodule
208 2987659509 Mesorhizobium sp. M1C.F.Ca.ET.204.01.1.1 Isolate Nodule
209 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
210 2996887358 Rhizobium sp. R711 Isolate Nodule
211 3004188549 Mesorhizobium sp. M1C.F.Ca.ET.195.01.1.1 Isolate Nodule
212 3004203850 Mesorhizobium sp. M2E.F.Ca.ET.219.01.1.1 Isolate Nodule
213 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
214 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
215 8003999396 Sinorhizobium medicae WSM1115 Isolate Nodule
216 8004395343 Mesorhizobium sp. M5C.F.Ca.IN.020.14.1.1 Isolate Nodule
217 8004445564 Mesorhizobium sp. M1A.F.Ca.IN.020.04.1.1 Isolate Nodule
218 8005258706 Rhizobium sp. R693 Isolate Nodule
219 8005321885 Rhizobium sp. R72 Isolate Nodule
220 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
221 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
222 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 33.86
Metatranscriptomes 0
Isolates 66.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.99
Nodule 62.6
Rhizoplane 1.57
Rhizosphere 11.02
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000019 3300002987 Bacteria 127304
2 JGI25160J50197_1000054 3300003354 Bacteria 127304
3 Ga0055524_1000230 3300003775 Bacteria 59566
4 Ga0055528_1000018 3300003790 Bacteria 155302
5 Ga0055528_1000040 3300003790 Bacteria 112553
6 Ga0055531_10012019 3300003794 Bacteria 4111
7 Ga0055543_1000214 3300004625 Bacteria 46687
8 Ga0065165_1000136 3300005262 Bacteria 127754
9 Ga0099826_10000073 3300006948 Bacteria 52790
10 Ga0099826_10036791 3300006948 Bacteria 3458
11 Ga0228710_1010234 3300022740 Bacteria 12628
12 Ga0228710_1012248 3300022740 Bacteria 10704
13 Ga0228710_1025777 3300022740 Bacteria 3776
14 Ga0209436_100174 3300025208 Bacteria 30498
15 Ga0209673_1000055 3300025273 Bacteria 272768
16 Ga0209673_1000222 3300025273 Bacteria 112605
17 Ga0209673_1000647 3300025273 Bacteria 51600
18 Ga0209130_1000120 3300025284 Bacteria 127890
19 Ga0209676_1002164 3300025292 Bacteria 14842
20 Ga0209676_1027595 3300025292 Bacteria 1784
21 Ga0209564_1000258 3300025295 Bacteria 112586
22 Ga0209564_1000396 3300025295 Bacteria 77945
23 Ga0209564_1012413 3300025295 Bacteria 3715
24 Ga0209050_1005525 3300025298 Bacteria 7898
25 Ga0209256_1000147 3300025299 Bacteria 149002
26 Ga0209256_1000202 3300025299 Bacteria 112605
27 Ga0209256_1000217 3300025299 Bacteria 106382
28 Ga0207426_1000206 3300025302 Bacteria 140737
29 Ga0209257_1000528 3300025304 Bacteria 66407
30 Ga0209257_1013652 3300025304 Bacteria 3584
31 Ga0209257_1032855 3300025304 Bacteria 1639
32 Ga0209281_1001464 3300027111 Bacteria 13756
33 Ga0209281_1006337 3300027111 Bacteria 3104
34 Ga0209281_1008359 3300027111 Bacteria 2520
35 Ga0209282_1000144 3300027666 Bacteria 41703
36 Ga0209282_1001710 3300027666 Bacteria 12252
37 Ga0315914_1027639 3300031967 Bacteria 3328
38 Ga0315914_1032706 3300031967 Bacteria 2422
39 Ga0315913_1000087 3300033430 Bacteria 52029
40 Ga0315913_1041381 3300033430 Bacteria 2423
41 Ga0315915_1004322 3300033464 Bacteria 17983
42 Ga0315915_1035045 3300033464 Bacteria 2795
43 Ga0495596_0030205 3300046500 Bacteria 2170
44 Ga0495583_0000721 3300046506 Bacteria 42331
45 Ga0495632_0028166 3300046519 Bacteria 2934
46 Ga0495643_0010053 3300046522 Bacteria 5837
47 Ga0495643_0019108 3300046522 Bacteria 3967
48 Ga0495643_0105970 3300046522 Bacteria 1435
49 Ga0495625_0011950 3300046660 Bacteria 7047
50 Ga0495625_0177880 3300046660 Bacteria 1417
51 Ga0496107_0187818 3300048910 Bacteria 1535
52 Ga0496112_0175235 3300048915 Bacteria 2110
53 Ga0496117_0005675 3300048920 Bacteria 13006
54 Ga0496118_0031009 3300048921 Bacteria 4445
55 Ga0496118_0041346 3300048921 Bacteria 3651
56 Ga0496119_0062141 3300048922 Bacteria 2227
57 Ga0496121_0020943 3300048924 Bacteria 6434
58 Ga0496121_0033942 3300048924 Bacteria 4604
59 Ga0496121_0069636 3300048924 Bacteria 2838
60 Ga0496122_0029478 3300048925 Bacteria 4627
61 Ga0496122_0061701 3300048925 Bacteria 2749
62 Ga0496122_0087957 3300048925 Bacteria 2132
63 Ga0496123_0057411 3300048926 Bacteria 2533
64 Ga0496124_0000064 3300048927 Bacteria 225176
65 Ga0496124_0000184 3300048927 Bacteria 123894
66 Ga0496124_0020499 3300048927 Bacteria 6106
67 Ga0496126_0001091 3300048929 Bacteria 45633
68 Ga0496126_0230756 3300048929 Bacteria 1551
69 Ga0501031_0005251 3300049568 Bacteria 8443
70 Ga0501032_0000213 3300049569 Bacteria 48075
71 Ga0501033_0002421 3300049570 Bacteria 15873
72 Ga0501034_0000569 3300049571 Bacteria 58487
73 Ga0501036_0003423 3300049572 Bacteria 12673
74 Ga0501037_0001683 3300049573 Bacteria 16070
75 Ga0501038_0000124 3300049574 Bacteria 64786
76 Ga0501039_0000204 3300049575 Bacteria 43147
77 Ga0501043_0001818 3300049579 Bacteria 18335
78 Ga0501035_0000204 3300049822 Bacteria 72214
79 Ga0501044_0219569 3300049823 Bacteria 1852
80 Ga0500569_000927 3300053109 Bacteria 5276
81 Ga0500594_0000750 3300053118 Bacteria 6911
82 Ga0500618_000229 3300053125 Bacteria 44067
83 Ga0500568_0000092 3300053139 Bacteria 84471
84 Ga0500616_0000751 3300053153 Bacteria 37335
85 Ga0500616_0000766 3300053153 Bacteria 37019
86 Ga0500645_015636 3300053730 Bacteria 2402
87 8055624903 8055617313 Bacteria 7548464
88 2509116422 2508501123 Bacteria 6283661
89 2512528662 2512047086 Bacteria 6850303
90 2512974437 2512875026 Bacteria 6861065
91 2513606959 2513237089 Bacteria 6553624
92 2513620377 2513237091 Bacteria 6900273
93 2513869510 2513237138 Bacteria 7368160
94 2513885988 2513237140 Bacteria 7076289
95 2514591934 2513237351 Bacteria 6968952
96 2516898450 2516653046 Bacteria 6989037
97 2517564841 2517487022 Bacteria 7227575
98 2535517741 2534681796 Bacteria 7146037
99 2551675684 2551306084 Bacteria 8942552
100 2551684634 2551306085 Bacteria 7347181
101 2551701251 2551306087 Bacteria 7351905
102 2551708521 2551306089 Bacteria 7162724
103 2551721738 2551306090 Bacteria 7953713
104 2551732639 2551306092 Bacteria 6992595
105 2551742566 2551306093 Bacteria 7064773
106 2554249743 2554235003 Bacteria 5877155
107 2585168746 2582581283 Bacteria 6030556
108 2585229386 2582581299 Bacteria 6518058
109 2585393404 2582581866 Bacteria 6859583
110 2585993264 2585427633 Bacteria 6413184
111 2599723884 2599185236 Bacteria 6875203
112 2643838106 2643221564 Bacteria 4193379
113 2644493929 2643221688 Bacteria 5260751
114 2765468187 2765235802 Bacteria 5618596
115 2792629984 2791355092 Bacteria 6248105
116 2802722015 2802428858 Bacteria 6636079
117 2802734362 2802428860 Bacteria 6525526
118 2802740433 2802428861 Bacteria 6534206
119 2802747617 2802428862 Bacteria 6633353
120 2805937060 2802429606 Bacteria 6346811
121 2806077513 2802429637 Bacteria 7067217
122 2839996054 2839993093 Bacteria 5512535
123 2840767270 2840764183 Bacteria 6358399
124 2842236141 2842229732 Bacteria 7475766
125 2842514905 2842509118 Bacteria 6850950
126 2854896580 2854896431 Bacteria 5869725
127 2854922006 2854916844 Bacteria 5725939
128 2855846430 2855839649 Bacteria 7135830
129 2856314403 2856314179 Bacteria 6477897
130 2856347148 2856342000 Bacteria 7176905
131 2871490349 2871488783 Bacteria 6929816
132 2871498716 2871495908 Bacteria 6935695
133 2876399719 2876392853 Bacteria 6660880
134 2878762932 2878760144 Bacteria 6823465
135 2878769903 2878767105 Bacteria 6898628
136 2878790026 2878788777 Bacteria 6567085
137 2881150242 2881147464 Bacteria 7779814
138 2881853494 2881853255 Bacteria 6698367
139 2882635822 2882632389 Bacteria 8154593
140 2885309062 2885305155 Bacteria 7348390
141 2903448875 2903448605 Bacteria 7357801
142 2903498294 2903492973 Bacteria 13473544
143 2903543516 2903540706 Bacteria 7062119
144 2904582975 2904578770 Bacteria 5302906
145 2904666243 2904659560 Bacteria 6685615
146 2906414825 2906414383 Bacteria 6580790
147 2913301238 2913295892 Bacteria 6333755
148 2915652179 2915650412 Bacteria 4288180
149 2915984395 2915980308 Bacteria 6624279
150 2915991846 2915986958 Bacteria 6739310
151 2916020514 2916014648 Bacteria 6946486
152 2916052879 2916048683 Bacteria 6543552
153 2916067432 2916061851 Bacteria 6737736
154 2920767302 2920760137 Bacteria 7427611
155 2920828780 2920822456 Bacteria 6897201
156 2921240976 2921237296 Bacteria 6876710
157 2921255517 2921250672 Bacteria 6677771
158 2921269131 2921263974 Bacteria 6864552
159 2921295378 2921289301 Bacteria 7316391
160 2921304001 2921296804 Bacteria 7176999
161 2922132558 2922130491 Bacteria 7173936
162 2923559443 2923556063 Bacteria 6793593
163 2924164464 2924158325 Bacteria 7188855
164 2924170849 2924165586 Bacteria 7260590
165 2924191529 2924186466 Bacteria 6876637
166 2924216201 2924214083 Bacteria 7080103
167 2924785458 2924784321 Bacteria 7416538
168 2926760292 2926754445 Bacteria 5964435
169 2937008509 2937002841 Bacteria 6934057
170 2937041144 2937036028 Bacteria 6846469
171 2937050015 2937049772 Bacteria 6757901
172 2937062828 2937056579 Bacteria 7107896
173 2937064422 2937063883 Bacteria 7199456
174 2937076363 2937071275 Bacteria 6984483
175 2937106205 2937098957 Bacteria 7249374
176 2937997363 2937994558 Bacteria 7036190
177 2957378967 2957375807 Bacteria 6425588
178 2957419386 2957415311 Bacteria 6991633
179 2957435705 2957430029 Bacteria 7022557
180 2957456358 2957450854 Bacteria 6765715
181 2957462147 2957457609 Bacteria 6967680
182 2957493219 2957491536 Bacteria 6695180
183 2957511045 2957505466 Bacteria 7253085
184 2958064603 2958064165 Bacteria 7158582
185 2958167835 2958165035 Bacteria 6906348
186 2960599135 2960597568 Bacteria 6550735
187 2960605766 2960603979 Bacteria 6898737
188 2960621294 2960617483 Bacteria 6727748
189 2960626377 2960624210 Bacteria 6875384
190 2960635624 2960631154 Bacteria 6732508
191 2960651420 2960645483 Bacteria 7211087
192 2960663411 2960660292 Bacteria 7041660
193 2960671144 2960667422 Bacteria 6763020
194 2960684035 2960680706 Bacteria 6624464
195 2960692662 2960687367 Bacteria 6535474
196 2961114714 2961114664 Bacteria 6680456
197 2961166305 2961163497 Bacteria 6901077
198 2961172143 2961170736 Bacteria 7072258
199 2964614363 2964607997 Bacteria 7101408
200 2964629693 2964628898 Bacteria 7083044
201 2964648206 2964643177 Bacteria 6820887
202 2964671641 2964670856 Bacteria 6851364
203 2964717958 2964712639 Bacteria 6695970
204 2965021125 2965018300 Bacteria 6883036
205 2965066828 2965062239 Bacteria 7412989
206 2967675406 2967671571 Bacteria 7021409
207 2967685725 2967678726 Bacteria 7264382
208 2967696936 2967693043 Bacteria 6804451
209 2967720113 2967714385 Bacteria 7000047
210 2967728010 2967721400 Bacteria 7073753
211 2967740373 2967735183 Bacteria 6827012
212 2968005345 2968003550 Bacteria 6929263
213 2968085420 2968083720 Bacteria 7351627
214 2968097824 2968097103 Bacteria 6107094
215 2968117742 2968110612 Bacteria 6814636
216 2968174703 2968171901 Bacteria 6894245
217 2970024405 2970019648 Bacteria 7072033
218 2970040457 2970033650 Bacteria 7118744
219 2970042246 2970040964 Bacteria 6731123
220 2970049717 2970047711 Bacteria 7088379
221 2970075580 2970068827 Bacteria 7123112
222 2970081193 2970076120 Bacteria 6697332
223 2970131863 2970129317 Bacteria 6806560
224 2970157627 2970156795 Bacteria 7168044
225 2970160375 2970156795 Bacteria 7168044
226 2970177383 2970170962 Bacteria 6876229
227 2970178912 2970177841 Bacteria 6768001
228 2970197861 2970191845 Bacteria 7032787
229 2970504741 2970503327 Bacteria 7099517
230 2970557796 2970554993 Bacteria 6814252
231 2977522934 2977516862 Bacteria 6940108
232 2977536086 2977530762 Bacteria 6951399
233 2977542402 2977537788 Bacteria 6929320
234 2977549330 2977544691 Bacteria 6875412
235 2977582203 2977579622 Bacteria 6772100
236 2977834901 2977828996 Bacteria 7007971
237 2977863325 2977858184 Bacteria 6215359
238 2977978534 2977971508 Bacteria 7472917
239 2979809378 2979808191 Bacteria 7179355
240 2987662314 2987659509 Bacteria 6966464
241 2989775622 2989771324 Bacteria 5605128
242 2996889566 2996887358 Bacteria 5795980
243 3004191365 3004188549 Bacteria 6952365
244 3004211157 3004203850 Bacteria 7307914
245 3005410007 3005409236 Bacteria 7188837
246 8003998823 8003992118 Bacteria 7266902
247 8004006335 8003999396 Bacteria 7063185
248 8004397890 8004395343 Bacteria 6620908
249 8004447109 8004445564 Bacteria 6322258
250 8005260961 8005258706 Bacteria 6184835
251 8005324093 8005321885 Bacteria 5795980
252 8018130305 8018127388 Bacteria 7351159
253 8018151726 8018150411 Bacteria 5549903
254 8024488796 8024486573 Bacteria 6540512
255 JGI25159J45721_1000019
256 JGI25160J50197_1000054
257 Ga0055524_1000230
258 Ga0055528_1000018
259 Ga0055528_1000040
260 Ga0055531_10012019
261 Ga0055543_1000214
262 Ga0065165_1000136
263 Ga0099826_10000073
264 Ga0099826_10036791
265 Ga0228710_1010234
266 Ga0228710_1012248
267 Ga0228710_1025777
268 Ga0209436_100174
269 Ga0209673_1000055
270 Ga0209673_1000222
271 Ga0209673_1000647
272 Ga0209130_1000120
273 Ga0209676_1002164
274 Ga0209676_1027595
275 Ga0209564_1000258
276 Ga0209564_1000396
277 Ga0209564_1012413
278 Ga0209050_1005525
279 Ga0209256_1000147
280 Ga0209256_1000202
281 Ga0209256_1000217
282 Ga0207426_1000206
283 Ga0209257_1000528
284 Ga0209257_1013652
285 Ga0209257_1032855
286 Ga0209281_1001464
287 Ga0209281_1006337
288 Ga0209281_1008359
289 Ga0209282_1000144
290 Ga0209282_1001710
291 Ga0315914_1027639
292 Ga0315914_1032706
293 Ga0315913_1000087
294 Ga0315913_1041381
295 Ga0315915_1004322
296 Ga0315915_1035045
297 Ga0495596_0030205
298 Ga0495583_0000721
299 Ga0495632_0028166
300 Ga0495643_0010053
301 Ga0495643_0019108
302 Ga0495643_0105970
303 Ga0495625_0011950
304 Ga0495625_0177880
305 Ga0496107_0187818
306 Ga0496112_0175235
307 Ga0496117_0005675
308 Ga0496118_0031009
309 Ga0496118_0041346
310 Ga0496119_0062141
311 Ga0496121_0020943
312 Ga0496121_0033942
313 Ga0496121_0069636
314 Ga0496122_0029478
315 Ga0496122_0061701
316 Ga0496122_0087957
317 Ga0496123_0057411
318 Ga0496124_0000064
319 Ga0496124_0000184
320 Ga0496124_0020499
321 Ga0496126_0001091
322 Ga0496126_0230756
323 Ga0501031_0005251
324 Ga0501032_0000213
325 Ga0501033_0002421
326 Ga0501034_0000569
327 Ga0501036_0003423
328 Ga0501037_0001683
329 Ga0501038_0000124
330 Ga0501039_0000204
331 Ga0501043_0001818
332 Ga0501035_0000204
333 Ga0501044_0219569
334 Ga0500569_000927
335 Ga0500594_0000750
336 Ga0500618_000229
337 Ga0500568_0000092
338 Ga0500616_0000751
339 Ga0500616_0000766
340 Ga0500645_015636
341 8055624903
342 2509116422
343 2512528662
344 2512974437
345 2513606959
346 2513620377
347 2513869510
348 2513885988
349 2514591934
350 2516898450
351 2517564841
352 2535517741
353 2551675684
354 2551684634
355 2551701251
356 2551708521
357 2551721738
358 2551732639
359 2551742566
360 2554249743
361 2585168746
362 2585229386
363 2585393404
364 2585993264
365 2599723884
366 2643838106
367 2644493929
368 2765468187
369 2792629984
370 2802722015
371 2802734362
372 2802740433
373 2802747617
374 2805937060
375 2806077513
376 2839996054
377 2840767270
378 2842236141
379 2842514905
380 2854896580
381 2854922006
382 2855846430
383 2856314403
384 2856347148
385 2871490349
386 2871498716
387 2876399719
388 2878762932
389 2878769903
390 2878790026
391 2881150242
392 2881853494
393 2882635822
394 2885309062
395 2903448875
396 2903498294
397 2903543516
398 2904582975
399 2904666243
400 2906414825
401 2913301238
402 2915652179
403 2915984395
404 2915991846
405 2916020514
406 2916052879
407 2916067432
408 2920767302
409 2920828780
410 2921240976
411 2921255517
412 2921269131
413 2921295378
414 2921304001
415 2922132558
416 2923559443
417 2924164464
418 2924170849
419 2924191529
420 2924216201
421 2924785458
422 2926760292
423 2937008509
424 2937041144
425 2937050015
426 2937062828
427 2937064422
428 2937076363
429 2937106205
430 2937997363
431 2957378967
432 2957419386
433 2957435705
434 2957456358
435 2957462147
436 2957493219
437 2957511045
438 2958064603
439 2958167835
440 2960599135
441 2960605766
442 2960621294
443 2960626377
444 2960635624
445 2960651420
446 2960663411
447 2960671144
448 2960684035
449 2960692662
450 2961114714
451 2961166305
452 2961172143
453 2964614363
454 2964629693
455 2964648206
456 2964671641
457 2964717958
458 2965021125
459 2965066828
460 2967675406
461 2967685725
462 2967696936
463 2967720113
464 2967728010
465 2967740373
466 2968005345
467 2968085420
468 2968097824
469 2968117742
470 2968174703
471 2970024405
472 2970040457
473 2970042246
474 2970049717
475 2970075580
476 2970081193
477 2970131863
478 2970157627
479 2970160375
480 2970177383
481 2970178912
482 2970197861
483 2970504741
484 2970557796
485 2977522934
486 2977536086
487 2977542402
488 2977549330
489 2977582203
490 2977834901
491 2977863325
492 2977978534
493 2979809378
494 2987662314
495 2989775622
496 2996889566
497 3004191365
498 3004211157
499 3005410007
500 8003998823
501 8004006335
502 8004397890
503 8004447109
504 8005260961
505 8005324093
506 8018130305
507 8018151726
508 8024488796

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01464

SLT

Transglycosylase SLT domain

99

208

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1sly-assembly1.cif.gz_A complex of the 70-kda soluble lytic transglycosylase with bulgecin a 0.8812 86 210
6fbt-assembly1.cif.gz_A the x-ray structure of lytic transglycosylase slt from pseudomonas aeruginosa in complex with the reaction product nag-anhnampentapeptide 0.8727 86 214
4chx-assembly2.cif.gz_B crystal structure of mltc in complex with disaccharide pentapeptide dhl89 0.853 84 203
7eyb-assembly1.cif.gz_J core proteins 0.8509 85 196
6fc4-assembly1.cif.gz_A the x-ray structure of lytic transglycosylase slt inactive mutant e503q from pseudomonas aeruginosa 0.8376 87 214
ID Description Score Start End Superfamily
1slyA03 Mainly Alpha;Orthogonal Bundle;Lysozyme; 0.908 86 197 1.10.530.10
af_P0AEZ7_97_250_1.10.530.10 Mainly Alpha;Orthogonal Bundle;Lysozyme; 0.8968 83 197 1.10.530.10
4cfoB02 Mainly Alpha;Orthogonal Bundle;Lysozyme; 0.8626 84 203 1.10.530.10
af_Q4DMD4_110_261_3.30.40.10 Alpha Beta;2-Layer Sandwich;Herpes Virus-1;Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 223 307 3.30.40.10
af_P0AEZ7_97_250_1.10.530.10 Mainly Alpha;Orthogonal Bundle;Lysozyme; 0.6772 83 197 1.10.530.10
ID Description Score Start End GO Terms
AF-A0A0N1LI44-F1-model_v4 Transglycosylase SLT domain-containing protein 0.9894 103 197
AF-A0A4Y7S1H1-F1-model_v4 Soluble lytic murein transglycosylase (EC 4.2.2.-) 0.9868 83 203 GO:0000270
GO:0008933
GO:0016020
AF-U4UWK5-F1-model_v4 Soluble lytic murein transglycosylase-like protein 0.9843 84 199
AF-A0A7C5SJC6-F1-model_v4 Lytic transglycosylase domain-containing protein 0.9842 84 200
AF-A0A7G6T6N8-F1-model_v4 Lytic transglycosylase domain-containing protein 0.9831 83 201

Map