F360443

General Info

Members Datasets Scaffolds Average Seq Length
249 138 498 247

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10411189|Ga0070658_104111891
Length 276
Sequence MEPAGGAFDVRIKSARRSFRKAIMNDQAVQPATDVAPGLTQTQRVINTFVAPSKTFADIKAGHKSWWLPFIITALCGGVLWAAINSQVTWKTVYENQQKLQPEFAKRMMDQMPPEQRAAADARGPKTQAITWALSPLGLLIYDLLMALILWPTINFGFGGKATYGSILAVIMYAGLVLWPIRLLLGAVALFAGAAPDGFNIGNPAPTNIAAFLNQADTNKAVYALLSAIDAPTLWCLIITSIGVAIVAGVKRPSGYIAVFGWWFLVTLVLVGIAAI

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
55 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
56 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
57 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
58 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
89 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
92 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
93 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
94 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
95 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
96 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
97 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
98 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
99 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
100 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
101 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
102 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
103 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
104 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
105 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
106 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
107 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
108 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
109 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
110 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
111 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
112 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
113 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
114 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
115 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
116 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
117 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
120 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
121 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
122 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
123 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
124 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
125 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
126 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
127 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
128 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
129 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
130 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
131 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
134 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
135 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
136 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
137 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
138 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.59
Metatranscriptomes 2.41
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.2
Nodule 0
Rhizoplane 0.4
Rhizosphere 97.99
Stem 0
Stem Tuber 0
Unclassified 23.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10411189 3300005327 Bacteria 1163
2 Ga0070658_10008811 3300005327 Bacteria 8109
3 Ga0070658_10034259 3300005327 Bacteria 4086
4 Ga0070683_100132281 3300005329 Bacteria 2361
5 Ga0070683_100692248 3300005329 Bacteria 976
6 Ga0070680_100006913 3300005336 Bacteria 8646
7 Ga0068868_100073077 3300005338 Bacteria 2737
8 Ga0068868_100078570 3300005338 Bacteria 2642
9 Ga0070660_100001386 3300005339 Bacteria 16479
10 Ga0070660_100038942 3300005339 Bacteria 3612
11 Ga0070661_100062111 3300005344 Bacteria 2742
12 Ga0070659_100000075 3300005366 Bacteria 77794
13 Ga0070659_100020963 3300005366 Bacteria 4970
14 Ga0070709_10000485 3300005434 Bacteria 23474
15 Ga0070714_100012422 3300005435 Bacteria 6800
16 Ga0070714_100223299 3300005435 Bacteria 1732
17 Ga0070714_100473879 3300005435 Bacteria 1191
18 Ga0070713_100000163 3300005436 Bacteria 45293
19 Ga0070713_100027970 3300005436 Bacteria 4447
20 Ga0070713_100203077 3300005436 Bacteria 1791
21 Ga0070710_10008470 3300005437 Bacteria 5007
22 Ga0070711_100033259 3300005439 Bacteria 3433
23 Ga0070711_100082715 3300005439 Bacteria 2292
24 Ga0070708_100002494 3300005445 Bacteria 14209
25 Ga0070663_100232644 3300005455 Unclassified 1452
26 Ga0070681_10031441 3300005458 Bacteria 5330
27 Ga0070681_10090509 3300005458 Bacteria 3010
28 Ga0070706_100037706 3300005467 Unclassified 4464
29 Ga0070706_100107053 3300005467 Unclassified 2601
30 Ga0070707_100007632 3300005468 Bacteria 10045
31 Ga0070698_100010165 3300005471 Bacteria 10054
32 Ga0070699_100000177 3300005518 Bacteria 61679
33 Ga0070679_100011956 3300005530 Bacteria 8287
34 Ga0070679_100368264 3300005530 Bacteria 1384
35 Ga0070697_100001730 3300005536 Bacteria 16675
36 Ga0070697_100270684 3300005536 Bacteria 1456
37 Ga0068853_100000115 3300005539 Bacteria 54407
38 Ga0068853_100050730 3300005539 Unclassified 3570
39 Ga0068853_100067803 3300005539 Bacteria 3100
40 Ga0068853_100103777 3300005539 Bacteria 2516
41 Ga0068855_100043575 3300005563 Bacteria 5315
42 Ga0068855_100152692 3300005563 Bacteria 2625
43 Ga0068855_100932969 3300005563 Bacteria 915
44 Ga0068857_100005509 3300005577 Bacteria 10797
45 Ga0068857_100009266 3300005577 Bacteria 8541
46 Ga0068854_100000038 3300005578 Bacteria 95978
47 Ga0068854_100068711 3300005578 Unclassified 2584
48 Ga0068854_100292591 3300005578 Bacteria 1315
49 Ga0068856_100003730 3300005614 Bacteria 15271
50 Ga0068856_100025565 3300005614 Bacteria 5757
51 Ga0068856_100883836 3300005614 Unclassified 912
52 Ga0068852_100028925 3300005616 Bacteria 4543
53 Ga0068852_100289657 3300005616 Unclassified 1581
54 Ga0068866_10020662 3300005718 Unclassified 3020
55 Ga0068863_100047478 3300005841 Bacteria 4072
56 Ga0068860_100397430 3300005843 Bacteria 1363
57 Ga0070717_10013278 3300006028 Bacteria 6305
58 Ga0070717_10022586 3300006028 Unclassified 4973
59 Ga0070717_10023125 3300006028 Unclassified 4920
60 Ga0070717_10234113 3300006028 Unclassified 1618
61 Ga0070717_10258078 3300006028 Bacteria 1541
62 Ga0070717_10260504 3300006028 Bacteria 1534
63 Ga0070717_10326243 3300006028 Unclassified 1368
64 Ga0070716_100015420 3300006173 Unclassified 3925
65 Ga0070712_100001721 3300006175 Bacteria 13392
66 Ga0070712_100006919 3300006175 Bacteria 7067
67 Ga0070712_100213164 3300006175 Bacteria 1524
68 Ga0097621_100108552 3300006237 Unclassified 2343
69 Ga0068871_100002575 3300006358 Bacteria 12387
70 Ga0105240_10009398 3300009093 Bacteria 13844
71 Ga0105240_10020442 3300009093 Bacteria 8831
72 Ga0105240_10139542 3300009093 Bacteria 2899
73 Ga0105240_10156231 3300009093 Bacteria 2712
74 Ga0105240_10217196 3300009093 Bacteria 2230
75 Ga0105240_10452291 3300009093 Unclassified 1437
76 Ga0105245_10001786 3300009098 Bacteria 19580
77 Ga0105245_10038624 3300009098 Bacteria 4247
78 Ga0105241_10149217 3300009174 Bacteria 1911
79 Ga0105241_10401679 3300009174 Bacteria 1202
80 Ga0105242_10048465 3300009176 Unclassified 3453
81 Ga0105248_10000049 3300009177 Bacteria 153741
82 Ga0105248_10058463 3300009177 Bacteria 4330
83 Ga0105248_10088127 3300009177 Bacteria 3493
84 Ga0105248_10202995 3300009177 Unclassified 2233
85 Ga0105237_10025700 3300009545 Bacteria 6020
86 Ga0105237_10051963 3300009545 Bacteria 4116
87 Ga0105238_10021204 3300009551 Bacteria 6622
88 Ga0105238_10029397 3300009551 Bacteria 5598
89 Ga0105238_10056620 3300009551 Bacteria 3933
90 Ga0105239_10155770 3300010375 Unclassified 2551
91 Ga0105239_10323264 3300010375 Bacteria 1740
92 Ga0157371_10178050 3300013102 Unclassified 1520
93 Ga0157371_10373632 3300013102 Bacteria 1040
94 Ga0157370_10005045 3300013104 Bacteria 14914
95 Ga0157370_10020133 3300013104 Bacteria 6669
96 Ga0157370_10278723 3300013104 Unclassified 1545
97 Ga0157369_10006187 3300013105 Bacteria 13888
98 Ga0157369_10018413 3300013105 Bacteria 7831
99 Ga0157369_10061967 3300013105 Bacteria 4031
100 Ga0157369_10379790 3300013105 Unclassified 1466
101 Ga0157374_10003877 3300013296 Bacteria 12559
102 Ga0157374_10039827 3300013296 Bacteria 4326
103 Ga0157374_10169276 3300013296 Bacteria 2130
104 Ga0157378_10000437 3300013297 Bacteria 40470
105 Ga0157378_10219853 3300013297 Bacteria 1805
106 Ga0163162_10027278 3300013306 Bacteria 5646
107 Ga0157372_10013203 3300013307 Bacteria 8813
108 Ga0157372_10022654 3300013307 Bacteria 6799
109 Ga0157372_10022745 3300013307 Bacteria 6786
110 Ga0157372_10024755 3300013307 Bacteria 6522
111 Ga0157372_10623850 3300013307 Unclassified 1256
112 Ga0157372_10655023 3300013307 Bacteria 1223
113 Ga0157375_10108263 3300013308 Unclassified 2873
114 Ga0157375_10135901 3300013308 Bacteria 2582
115 Ga0157379_10025330 3300014968 Bacteria 5270
116 Ga0157379_10535439 3300014968 Unclassified 1088
117 Ga0157376_10172408 3300014969 Bacteria 1971
118 Ga0182007_10106205 3300015262 Unclassified 932
119 Ga0213871_10067497 3300021441 Bacteria 1006
120 Ga0224572_1003890 3300024225 Unclassified 2557
121 Ga0228598_1007298 3300024227 Bacteria 2254
122 Ga0207642_10014947 3300025899 Unclassified 2880
123 Ga0207699_10003015 3300025906 Bacteria 8003
124 Ga0207705_10043773 3300025909 Bacteria 3216
125 Ga0207705_10077427 3300025909 Bacteria 2419
126 Ga0207705_10254874 3300025909 Unclassified 1339
127 Ga0207684_10001546 3300025910 Bacteria 24600
128 Ga0207684_10124437 3300025910 Bacteria 2212
129 Ga0207654_10242831 3300025911 Bacteria 1204
130 Ga0207707_10016684 3300025912 Bacteria 6403
131 Ga0207695_10003985 3300025913 Bacteria 20373
132 Ga0207695_10225971 3300025913 Bacteria 1778
133 Ga0207671_10027528 3300025914 Bacteria 4250
134 Ga0207671_10048802 3300025914 Bacteria 3133
135 Ga0207693_10000257 3300025915 Bacteria 48954
136 Ga0207693_10197627 3300025915 Bacteria 1581
137 Ga0207663_10062989 3300025916 Bacteria 2360
138 Ga0207660_10033763 3300025917 Bacteria 3542
139 Ga0207657_10003277 3300025919 Bacteria 17324
140 Ga0207657_10014331 3300025919 Bacteria 7743
141 Ga0207657_10088648 3300025919 Bacteria 2585
142 Ga0207652_10029065 3300025921 Bacteria 4617
143 Ga0207652_10299236 3300025921 Bacteria 1452
144 Ga0207646_10001897 3300025922 Bacteria 25168
145 Ga0207694_10047117 3300025924 Unclassified 3333
146 Ga0207694_10051169 3300025924 Bacteria 3201
147 Ga0207694_10711106 3300025924 Bacteria 847
148 Ga0207700_10000152 3300025928 Bacteria 41334
149 Ga0207700_10126666 3300025928 Unclassified 2079
150 Ga0207700_10218399 3300025928 Bacteria 1615
151 Ga0207664_10000076 3300025929 Bacteria 102019
152 Ga0207664_10066823 3300025929 Bacteria 2883
153 Ga0207664_10206729 3300025929 Unclassified 1697
154 Ga0207664_10442538 3300025929 Bacteria 1159
155 Ga0207690_10005479 3300025932 Bacteria 7486
156 Ga0207690_10124837 3300025932 Bacteria 1875
157 Ga0207665_10002806 3300025939 Bacteria 11676
158 Ga0207665_10216077 3300025939 Bacteria 1403
159 Ga0207711_10000033 3300025941 Bacteria 193513
160 Ga0207711_10058036 3300025941 Bacteria 3329
161 Ga0207661_10052886 3300025944 Bacteria 3247
162 Ga0207667_10095847 3300025949 Bacteria 3062
163 Ga0207667_10559406 3300025949 Bacteria 1156
164 Ga0207640_10000051 3300025981 Bacteria 95956
165 Ga0207640_10185577 3300025981 Bacteria 1563
166 Ga0207640_10211332 3300025981 Bacteria 1478
167 Ga0207677_10039185 3300026023 Unclassified 3113
168 Ga0207677_10054598 3300026023 Bacteria 2727
169 Ga0207639_10000069 3300026041 Bacteria 96786
170 Ga0207639_10005801 3300026041 Bacteria 8364
171 Ga0207639_10234744 3300026041 Bacteria 1592
172 Ga0207678_10003228 3300026067 Bacteria 14724
173 Ga0207678_10135998 3300026067 Bacteria 2097
174 Ga0207702_10155312 3300026078 Bacteria 2085
175 Ga0207702_10833659 3300026078 Unclassified 912
176 Ga0207674_10000847 3300026116 Bacteria 39909
177 Ga0207674_10007600 3300026116 Bacteria 12628
178 Ga0207698_10152793 3300026142 Bacteria 2006
179 Ga0268264_10454982 3300028381 Unclassified 1241
180 Ga0265338_10003661 3300028800 Bacteria 21405
181 Ga0265338_10024120 3300028800 Bacteria 6225
182 Ga0265338_10053698 3300028800 Bacteria 3601
183 Ga0265338_10155668 3300028800 Bacteria 1770
184 Ga0265338_10160677 3300028800 Unclassified 1735
185 Ga0265762_1006577 3300030760 Unclassified 2077
186 Ga0265762_1007554 3300030760 Bacteria 1939
187 Ga0265762_1008863 3300030760 Bacteria 1791
188 Ga0265770_1007549 3300030878 Unclassified 1533
189 Ga0265760_10035738 3300031090 Bacteria 1472
190 Ga0265760_10041537 3300031090 Unclassified 1371
191 Ga0265325_10006583 3300031241 Bacteria 7037
192 Ga0265325_10031462 3300031241 Bacteria 2839
193 Ga0265325_10039908 3300031241 Unclassified 2468
194 Ga0265339_10028744 3300031249 Bacteria 3159
195 Ga0265327_10150303 3300031251 Unclassified 1082
196 Ga0265316_10050457 3300031344 Bacteria 3272
197 Ga0265316_10090452 3300031344 Bacteria 2335
198 Ga0265313_10039498 3300031595 Bacteria 2340
199 Ga0265313_10063575 3300031595 Bacteria 1720
200 Ga0265314_10069867 3300031711 Bacteria 2355
201 Ga0373934_0032380 3300035086 Unclassified 2050
202 Ga0373923_0280734 3300035111 Unclassified 785
203 Ga0373936_0001392 3300035113 Bacteria 8779
204 Ga0373945_0000758 3300035116 Bacteria 9427
205 Ga0373945_0049558 3300035116 Unclassified 1541
206 Ga0373953_0006455 3300035117 Unclassified 3863
207 Ga0373954_0015616 3300035118 Bacteria 3395
208 Ga0373956_0003153 3300035119 Bacteria 6662
209 Ga0373957_0062654 3300035120 Unclassified 1443
210 Ga0373943_0000342 3300035170 Bacteria 19549
211 Ga0373946_0038349 3300035171 Bacteria 1951
212 Ga0373946_0128332 3300035171 Unclassified 1164
213 Ga0373955_0227730 3300035172 Unclassified 1114
214 Ga0373924_0213699 3300035410 Unclassified 852
215 Ga0373935_0004925 3300035692 Bacteria 7847
216 Ga0373935_0005573 3300035692 Bacteria 7418
217 Ga0373927_0001340 3300035695 Bacteria 18585
218 Ga0373933_0364018 3300035724 Unclassified 940
219 Ga0373947_0000058 3300035725 Bacteria 55174
220 Ga0373947_0123098 3300035725 Bacteria 1649
221 Ga0373947_0262482 3300035725 Unclassified 1145
222 Ga0373925_0237597 3300037068 Unclassified 1458
223 Ga0436360_0750516 3300039438 Bacteria 1274
224 Ga0436360_1081249 3300039438 Bacteria 1636
225 Ga0466961_0186153 3300044693 Bacteria 1288
226 Ga0495651_0126048 3300046462 Unclassified 1875
227 Ga0495650_0000006 3300046471 Bacteria 721347
228 Ga0495580_0129195 3300046472 Bacteria 1753
229 Ga0495664_0010074 3300046477 Bacteria 5303
230 Ga0495630_0043950 3300046517 Bacteria 3339
231 Ga0495630_0308078 3300046517 Unclassified 1210
232 Ga0495630_0403750 3300046517 Bacteria 1047
233 Ga0495586_0277712 3300046535 Unclassified 958
234 Ga0495645_0035077 3300046543 Bacteria 3658
235 Ga0495581_0258725 3300047315 Bacteria 1018
236 Ga0495674_0003273 3300047319 Bacteria 15737
237 Ga0495676_0421941 3300047321 Unclassified 883
238 Ga0495680_0440587 3300047322 Unclassified 893
239 Ga0495686_0004933 3300047472 Bacteria 10744
240 Ga0496115_0620327 3300048918 Unclassified 858
241 Ga0496126_0003359 3300048929 Bacteria 20291
242 Ga0501033_0301454 3300049570 Bacteria 1128
243 Ga0501047_0004467 3300049581 Bacteria 13163
244 Ga0501070_0456266 3300049586 Unclassified 1030
245 Ga0501080_0886913 3300049742 Bacteria 778
246 Ga0501035_0084913 3300049822 Bacteria 2792
247 Ga0500643_012906 3300053087 Bacteria 2976
248 Ga0500644_0031724 3300053088 Unclassified 1683
249 Ga0500595_028739 3300053119 Bacteria 1893
250 Ga0070658_10411189
251 Ga0070658_10008811
252 Ga0070658_10034259
253 Ga0070683_100132281
254 Ga0070683_100692248
255 Ga0070680_100006913
256 Ga0068868_100073077
257 Ga0068868_100078570
258 Ga0070660_100001386
259 Ga0070660_100038942
260 Ga0070661_100062111
261 Ga0070659_100000075
262 Ga0070659_100020963
263 Ga0070709_10000485
264 Ga0070714_100012422
265 Ga0070714_100223299
266 Ga0070714_100473879
267 Ga0070713_100000163
268 Ga0070713_100027970
269 Ga0070713_100203077
270 Ga0070710_10008470
271 Ga0070711_100033259
272 Ga0070711_100082715
273 Ga0070708_100002494
274 Ga0070663_100232644
275 Ga0070681_10031441
276 Ga0070681_10090509
277 Ga0070706_100037706
278 Ga0070706_100107053
279 Ga0070707_100007632
280 Ga0070698_100010165
281 Ga0070699_100000177
282 Ga0070679_100011956
283 Ga0070679_100368264
284 Ga0070697_100001730
285 Ga0070697_100270684
286 Ga0068853_100000115
287 Ga0068853_100050730
288 Ga0068853_100067803
289 Ga0068853_100103777
290 Ga0068855_100043575
291 Ga0068855_100152692
292 Ga0068855_100932969
293 Ga0068857_100005509
294 Ga0068857_100009266
295 Ga0068854_100000038
296 Ga0068854_100068711
297 Ga0068854_100292591
298 Ga0068856_100003730
299 Ga0068856_100025565
300 Ga0068856_100883836
301 Ga0068852_100028925
302 Ga0068852_100289657
303 Ga0068866_10020662
304 Ga0068863_100047478
305 Ga0068860_100397430
306 Ga0070717_10013278
307 Ga0070717_10022586
308 Ga0070717_10023125
309 Ga0070717_10234113
310 Ga0070717_10258078
311 Ga0070717_10260504
312 Ga0070717_10326243
313 Ga0070716_100015420
314 Ga0070712_100001721
315 Ga0070712_100006919
316 Ga0070712_100213164
317 Ga0097621_100108552
318 Ga0068871_100002575
319 Ga0105240_10009398
320 Ga0105240_10020442
321 Ga0105240_10139542
322 Ga0105240_10156231
323 Ga0105240_10217196
324 Ga0105240_10452291
325 Ga0105245_10001786
326 Ga0105245_10038624
327 Ga0105241_10149217
328 Ga0105241_10401679
329 Ga0105242_10048465
330 Ga0105248_10000049
331 Ga0105248_10058463
332 Ga0105248_10088127
333 Ga0105248_10202995
334 Ga0105237_10025700
335 Ga0105237_10051963
336 Ga0105238_10021204
337 Ga0105238_10029397
338 Ga0105238_10056620
339 Ga0105239_10155770
340 Ga0105239_10323264
341 Ga0157371_10178050
342 Ga0157371_10373632
343 Ga0157370_10005045
344 Ga0157370_10020133
345 Ga0157370_10278723
346 Ga0157369_10006187
347 Ga0157369_10018413
348 Ga0157369_10061967
349 Ga0157369_10379790
350 Ga0157374_10003877
351 Ga0157374_10039827
352 Ga0157374_10169276
353 Ga0157378_10000437
354 Ga0157378_10219853
355 Ga0163162_10027278
356 Ga0157372_10013203
357 Ga0157372_10022654
358 Ga0157372_10022745
359 Ga0157372_10024755
360 Ga0157372_10623850
361 Ga0157372_10655023
362 Ga0157375_10108263
363 Ga0157375_10135901
364 Ga0157379_10025330
365 Ga0157379_10535439
366 Ga0157376_10172408
367 Ga0182007_10106205
368 Ga0213871_10067497
369 Ga0224572_1003890
370 Ga0228598_1007298
371 Ga0207642_10014947
372 Ga0207699_10003015
373 Ga0207705_10043773
374 Ga0207705_10077427
375 Ga0207705_10254874
376 Ga0207684_10001546
377 Ga0207684_10124437
378 Ga0207654_10242831
379 Ga0207707_10016684
380 Ga0207695_10003985
381 Ga0207695_10225971
382 Ga0207671_10027528
383 Ga0207671_10048802
384 Ga0207693_10000257
385 Ga0207693_10197627
386 Ga0207663_10062989
387 Ga0207660_10033763
388 Ga0207657_10003277
389 Ga0207657_10014331
390 Ga0207657_10088648
391 Ga0207652_10029065
392 Ga0207652_10299236
393 Ga0207646_10001897
394 Ga0207694_10047117
395 Ga0207694_10051169
396 Ga0207694_10711106
397 Ga0207700_10000152
398 Ga0207700_10126666
399 Ga0207700_10218399
400 Ga0207664_10000076
401 Ga0207664_10066823
402 Ga0207664_10206729
403 Ga0207664_10442538
404 Ga0207690_10005479
405 Ga0207690_10124837
406 Ga0207665_10002806
407 Ga0207665_10216077
408 Ga0207711_10000033
409 Ga0207711_10058036
410 Ga0207661_10052886
411 Ga0207667_10095847
412 Ga0207667_10559406
413 Ga0207640_10000051
414 Ga0207640_10185577
415 Ga0207640_10211332
416 Ga0207677_10039185
417 Ga0207677_10054598
418 Ga0207639_10000069
419 Ga0207639_10005801
420 Ga0207639_10234744
421 Ga0207678_10003228
422 Ga0207678_10135998
423 Ga0207702_10155312
424 Ga0207702_10833659
425 Ga0207674_10000847
426 Ga0207674_10007600
427 Ga0207698_10152793
428 Ga0268264_10454982
429 Ga0265338_10003661
430 Ga0265338_10024120
431 Ga0265338_10053698
432 Ga0265338_10155668
433 Ga0265338_10160677
434 Ga0265762_1006577
435 Ga0265762_1007554
436 Ga0265762_1008863
437 Ga0265770_1007549
438 Ga0265760_10035738
439 Ga0265760_10041537
440 Ga0265325_10006583
441 Ga0265325_10031462
442 Ga0265325_10039908
443 Ga0265339_10028744
444 Ga0265327_10150303
445 Ga0265316_10050457
446 Ga0265316_10090452
447 Ga0265313_10039498
448 Ga0265313_10063575
449 Ga0265314_10069867
450 Ga0373934_0032380
451 Ga0373923_0280734
452 Ga0373936_0001392
453 Ga0373945_0000758
454 Ga0373945_0049558
455 Ga0373953_0006455
456 Ga0373954_0015616
457 Ga0373956_0003153
458 Ga0373957_0062654
459 Ga0373943_0000342
460 Ga0373946_0038349
461 Ga0373946_0128332
462 Ga0373955_0227730
463 Ga0373924_0213699
464 Ga0373935_0004925
465 Ga0373935_0005573
466 Ga0373927_0001340
467 Ga0373933_0364018
468 Ga0373947_0000058
469 Ga0373947_0123098
470 Ga0373947_0262482
471 Ga0373925_0237597
472 Ga0436360_0750516
473 Ga0436360_1081249
474 Ga0466961_0186153
475 Ga0495651_0126048
476 Ga0495650_0000006
477 Ga0495580_0129195
478 Ga0495664_0010074
479 Ga0495630_0043950
480 Ga0495630_0308078
481 Ga0495630_0403750
482 Ga0495586_0277712
483 Ga0495645_0035077
484 Ga0495581_0258725
485 Ga0495674_0003273
486 Ga0495676_0421941
487 Ga0495680_0440587
488 Ga0495686_0004933
489 Ga0496115_0620327
490 Ga0496126_0003359
491 Ga0501033_0301454
492 Ga0501047_0004467
493 Ga0501070_0456266
494 Ga0501080_0886913
495 Ga0501035_0084913
496 Ga0500643_012906
497 Ga0500644_0031724
498 Ga0500595_028739

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04893

Yip1

Yip1 domain

46

274

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7xgf-assembly2.cif.gz_D crystal structure of bcl-xl in complex with computationally designed inhibitor protein 0.2963 49 233
3mvc-assembly1.cif.gz_A high resolution crystal structure of the heme domain of glb-6 from c. elegans 0.2946 41 247
7xgf-assembly2.cif.gz_D crystal structure of bcl-xl in complex with computationally designed inhibitor protein 0.283 49 233
8ipq-assembly2.cif.gz_C cryo-em structure of heme transporter cyddc from mycobacterium smegmatis in the inward facing apo state 0.2824 14 171
8btk-assembly1.cif.gz_TC structure of the trap complex with the sec translocon and a translating ribosome 0.2796 16 159
ID Description Score Start End Superfamily
af_P9WJU1_755_964_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.3775 3 248 1.20.1640.10
af_A0A5K1K993_190_457_1.20.1560.10 Mainly Alpha;Up-down Bundle;ABC transporter transmembrane region fold;ABC transporter type 1, transmembrane domain 0.3645 18 165 1.20.1560.10
af_P9WJU1_755_964_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.3452 3 248 1.20.1640.10
af_Q0JFK0_71_393_1.20.1560.10 Mainly Alpha;Up-down Bundle;ABC transporter transmembrane region fold;ABC transporter type 1, transmembrane domain 0.3274 17 162 1.20.1560.10
af_P32386_333_684_1.20.1560.10 Mainly Alpha;Up-down Bundle;ABC transporter transmembrane region fold;ABC transporter type 1, transmembrane domain 0.3088 3 165 1.20.1560.10
ID Description Score Start End GO Terms
AF-A0A4Q0T753-F1-model_v4 Yip1 domain-containing protein 0.9785 15 247 GO:0016020
AF-I3ZC06-F1-model_v4 Yip1 domain protein 0.9639 8 249 GO:0016020
AF-A0A4V6NEV3-F1-model_v4 Yip1-like protein 0.9548 1 248 GO:0016020
AF-Q1IHB9-F1-model_v4 Yip1 domain-containing protein 0.9459 1 249 GO:0016020
AF-A0A3P0X704-F1-model_v4 Yip1 domain-containing protein 0.9454 15 249 GO:0016020

Map