F359991

General Info

Members Datasets Scaffolds Average Seq Length
248 154 496 309

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10081740|Ga0307508_100817402
Length 323
Sequence MTIAPHPPLDRPLRLGTRRSPLAMIQAEEARATLCAAHGWPKSAVELVPVTASGDKVLDRPLAEIGGKALWTKELDAWLLAGEIDFAVHSAKDVETIRPEGIAIAAVLAREDVRDVLVLRQAQDQRKGPSGIAALPPGARIGTSAPRRAAQALHLRPDCRVVSFRGNVATRLAKLAAGEADATLLAAAGLNRLGQSTVGTPLDPEVWLPAPAQGAIMIECRSNDAGMRELLGTIDHPPSCHAVMAERALLAALGGNCHSAIGLLTRAEGDVLHMRAALFAPDGSMRVDGEARFSAGDVAGPAALAADLLARAIPEIRALFAAP

Samples

Sample ID Description Type Environment
1 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
5 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
34 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
35 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
36 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
37 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
38 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
39 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
44 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
87 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
90 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
91 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
92 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
93 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
94 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
95 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
96 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
97 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
98 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
99 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
100 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
101 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
102 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
103 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
104 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
105 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
106 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
107 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
108 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
111 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
112 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
115 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
116 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
117 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
118 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
119 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
122 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
123 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
124 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
125 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
126 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
127 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
131 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
133 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
134 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
135 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
136 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
137 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
138 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
139 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
140 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
141 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
142 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
143 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
144 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
145 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
146 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
147 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
148 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
149 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
150 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
151 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
152 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
153 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
154 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.18
Metatranscriptomes 0
Isolates 2.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.98
Nodule 0
Rhizoplane 5.65
Rhizosphere 62.9
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307508_10081740 3300031616 Bacteria 2812
2 SwRhRL2b_contig_2665226 2162886007 Bacteria 37318
3 JGI24751J29686_10000251 3300002459 Bacteria 21182
4 Ga0055536_1000358 3300003781 Bacteria 33927
5 Ga0055536_1000785 3300003781 Bacteria 21171
6 Ga0055536_1004888 3300003781 Bacteria 6689
7 Ga0055530_10000054 3300003791 Bacteria 102159
8 Ga0055530_10027626 3300003791 Bacteria 1547
9 Ga0055531_10000890 3300003794 Bacteria 24397
10 Ga0055531_10003200 3300003794 Bacteria 10516
11 Ga0065704_10070228 3300005289 Bacteria 56935
12 Ga0070658_10000662 3300005327 Bacteria 29749
13 Ga0070658_10029030 3300005327 Bacteria 4442
14 Ga0070658_10189328 3300005327 Bacteria 1734
15 Ga0070658_10332844 3300005327 Bacteria 1298
16 Ga0070683_100210082 3300005329 Bacteria 1849
17 Ga0070666_10017775 3300005335 Bacteria 4563
18 Ga0070682_100256177 3300005337 Bacteria 1264
19 Ga0070660_100368001 3300005339 Bacteria 1185
20 Ga0070687_100056825 3300005343 Bacteria 2049
21 Ga0070668_100106412 3300005347 Bacteria 2228
22 Ga0070669_100000213 3300005353 Bacteria 48609
23 Ga0070669_100000799 3300005353 Bacteria 22862
24 Ga0070671_100000003 3300005355 Bacteria 270186
25 Ga0070671_100007726 3300005355 Bacteria 8592
26 Ga0070671_100058181 3300005355 Bacteria 3218
27 Ga0070671_100219347 3300005355 Bacteria 1613
28 Ga0070667_100000392 3300005367 Bacteria 47275
29 Ga0070667_100098565 3300005367 Bacteria 2522
30 Ga0070667_100233784 3300005367 Bacteria 1639
31 Ga0070663_100027733 3300005455 Bacteria 3849
32 Ga0070662_100003086 3300005457 Bacteria 10338
33 Ga0070684_100343829 3300005535 Bacteria 1372
34 Ga0070665_100000070 3300005548 Bacteria 200681
35 Ga0070665_100054556 3300005548 Bacteria 4008
36 Ga0070665_100126957 3300005548 Bacteria 2553
37 Ga0068855_100001523 3300005563 Bacteria 29042
38 Ga0068855_100003476 3300005563 Bacteria 19279
39 Ga0068855_100010379 3300005563 Bacteria 11236
40 Ga0068855_100191301 3300005563 Bacteria 2308
41 Ga0070664_100147783 3300005564 Bacteria 2073
42 Ga0068857_100165650 3300005577 Bacteria 2007
43 Ga0068854_100001304 3300005578 Bacteria 15034
44 Ga0068856_100009857 3300005614 Bacteria 9275
45 Ga0068856_100475285 3300005614 Bacteria 1271
46 Ga0068852_100000114 3300005616 Bacteria 54476
47 Ga0068852_100069023 3300005616 Bacteria 3096
48 Ga0068852_100302313 3300005616 Bacteria 1549
49 Ga0068852_100633281 3300005616 Bacteria 1076
50 Ga0068859_100135680 3300005617 Bacteria 2534
51 Ga0068864_100032103 3300005618 Bacteria 4460
52 Ga0068863_100036318 3300005841 Bacteria 4694
53 Ga0068863_100042492 3300005841 Bacteria 4319
54 Ga0068858_100039905 3300005842 Bacteria 4352
55 Ga0068858_100045682 3300005842 Bacteria 4060
56 Ga0068858_100170908 3300005842 Bacteria 2049
57 Ga0068862_100008530 3300005844 Bacteria 8479
58 Ga0068862_100062777 3300005844 Bacteria 3196
59 Ga0075363_100000655 3300006048 Bacteria 11508
60 Ga0075363_100049086 3300006048 Bacteria 2246
61 Ga0075364_10009321 3300006051 Bacteria 5883
62 Ga0075432_10004893 3300006058 Bacteria 4562
63 Ga0075362_10000167 3300006177 Bacteria 17986
64 Ga0075369_10004685 3300006186 Bacteria 5074
65 Ga0075369_10006232 3300006186 Bacteria 4504
66 Ga0075366_10000122 3300006195 Bacteria 32264
67 Ga0075366_10103490 3300006195 Bacteria 1710
68 Ga0075370_10000031 3300006353 Bacteria 45385
69 Ga0075370_10056948 3300006353 Bacteria 2221
70 Ga0097620_100135672 3300006931 Bacteria 2534
71 Ga0105251_10000334 3300009011 Bacteria 47275
72 Ga0105240_10005122 3300009093 Bacteria 19606
73 Ga0105240_10356097 3300009093 Bacteria 1659
74 Ga0105245_10064964 3300009098 Bacteria 3299
75 Ga0105247_10030825 3300009101 Bacteria 3252
76 Ga0105248_10023914 3300009177 Bacteria 6792
77 Ga0105248_10045104 3300009177 Bacteria 4943
78 Ga0105248_10154484 3300009177 Bacteria 2589
79 Ga0105248_10278136 3300009177 Bacteria 1884
80 Ga0105249_10490934 3300009553 Bacteria 1272
81 Ga0105246_10000847 3300011119 Bacteria 17492
82 Ga0157375_10047169 3300013308 Bacteria 4205
83 Ga0157377_10258694 3300014745 Bacteria 1131
84 Ga0163161_10002367 3300017792 Bacteria 13509
85 Ga0209675_1000131 3300025291 Bacteria 102409
86 Ga0209676_1000084 3300025292 Bacteria 274330
87 Ga0209676_1000729 3300025292 Bacteria 45044
88 Ga0209676_1000746 3300025292 Bacteria 44094
89 Ga0209676_1017911 3300025292 Bacteria 2488
90 Ga0209025_1006315 3300025294 Bacteria 9254
91 Ga0209050_1000113 3300025298 Bacteria 209222
92 Ga0209050_1000127 3300025298 Bacteria 187951
93 Ga0209050_1001889 3300025298 Bacteria 20097
94 Ga0209257_1000083 3300025304 Bacteria 296207
95 Ga0209257_1000126 3300025304 Bacteria 215705
96 Ga0209257_1000330 3300025304 Bacteria 99167
97 Ga0209257_1011185 3300025304 Bacteria 4365
98 Ga0207697_10054248 3300025315 Bacteria 1661
99 Ga0207713_1000987 3300025735 Bacteria 24987
100 Ga0207710_10175319 3300025900 Bacteria 1050
101 Ga0207647_10088974 3300025904 Bacteria 1843
102 Ga0207705_10000009 3300025909 Bacteria 576128
103 Ga0207705_10218066 3300025909 Bacteria 1448
104 Ga0207695_10005113 3300025913 Bacteria 17566
105 Ga0207695_10093905 3300025913 Bacteria 3008
106 Ga0207657_10131019 3300025919 Bacteria 2055
107 Ga0207681_10000037 3300025923 Bacteria 154417
108 Ga0207681_10000490 3300025923 Bacteria 27651
109 Ga0207650_10022540 3300025925 Bacteria 4458
110 Ga0207687_10226185 3300025927 Bacteria 1476
111 Ga0207644_10000004 3300025931 Bacteria 566613
112 Ga0207644_10000327 3300025931 Bacteria 30858
113 Ga0207644_10051290 3300025931 Bacteria 2961
114 Ga0207706_10003818 3300025933 Bacteria 14362
115 Ga0207706_10098590 3300025933 Bacteria 2571
116 Ga0207709_10082189 3300025935 Bacteria 2079
117 Ga0207711_10002900 3300025941 Bacteria 15023
118 Ga0207661_10280111 3300025944 Bacteria 1490
119 Ga0207679_10023064 3300025945 Bacteria 4249
120 Ga0207667_10001114 3300025949 Bacteria 33871
121 Ga0207667_10005357 3300025949 Bacteria 15638
122 Ga0207667_10023596 3300025949 Bacteria 6772
123 Ga0207712_10245685 3300025961 Bacteria 1444
124 Ga0207640_10000334 3300025981 Bacteria 31339
125 Ga0207658_10008312 3300025986 Bacteria 7066
126 Ga0207658_10128873 3300025986 Bacteria 2030
127 Ga0207703_10007891 3300026035 Bacteria 8416
128 Ga0207678_10016946 3300026067 Bacteria 6398
129 Ga0207702_10032439 3300026078 Bacteria 4359
130 Ga0207702_10045749 3300026078 Bacteria 3682
131 Ga0207641_10018961 3300026088 Bacteria 5644
132 Ga0207676_10267207 3300026095 Bacteria 1547
133 Ga0207674_10058433 3300026116 Bacteria 3907
134 Ga0207674_10173406 3300026116 Bacteria 2110
135 Ga0207698_10000085 3300026142 Bacteria 61596
136 Ga0207698_10050889 3300026142 Bacteria 3164
137 Ga0207698_10127749 3300026142 Bacteria 2166
138 Ga0268266_10003129 3300028379 Bacteria 16835
139 Ga0268265_10142091 3300028380 Bacteria 2011
140 Ga0268264_10010575 3300028381 Bacteria 7628
141 Ga0307405_10061931 3300031731 Bacteria 2367
142 Ga0307405_10104551 3300031731 Bacteria 1906
143 Ga0307406_10035566 3300031901 Bacteria 3065
144 Ga0307412_10006239 3300031911 Bacteria 6729
145 Ga0307412_10072216 3300031911 Bacteria 2358
146 Ga0307414_10000212 3300032004 Bacteria 38895
147 Ga0307414_10000704 3300032004 Bacteria 17134
148 Ga0451807_2304852 3300041486 Bacteria 2076
149 Ga0495627_000758 3300046453 Bacteria 24030
150 Ga0495650_0001475 3300046471 Bacteria 22567
151 Ga0495596_0000008 3300046500 Bacteria 150860
152 Ga0495596_0000327 3300046500 Bacteria 31040
153 Ga0495607_0039128 3300046501 Bacteria 2834
154 Ga0495607_0062778 3300046501 Bacteria 2104
155 Ga0495583_0006140 3300046506 Bacteria 7920
156 Ga0495606_0004417 3300046507 Bacteria 14070
157 Ga0495610_0000033 3300046512 Bacteria 204151
158 Ga0495610_0000116 3300046512 Bacteria 90702
159 Ga0495610_0003683 3300046512 Bacteria 11767
160 Ga0495632_0000309 3300046519 Bacteria 47211
161 Ga0495632_0019364 3300046519 Bacteria 3710
162 Ga0495643_0000048 3300046522 Bacteria 212788
163 Ga0495643_0027541 3300046522 Bacteria 3192
164 Ga0495643_0035265 3300046522 Bacteria 2756
165 Ga0495654_0133095 3300046530 Bacteria 1114
166 Ga0495609_0001350 3300046538 Bacteria 16547
167 Ga0495668_0000234 3300046616 Bacteria 79147
168 Ga0495625_0000195 3300046660 Bacteria 96493
169 Ga0495670_0066171 3300046691 Bacteria 1823
170 Ga0495681_0000822 3300047470 Bacteria 23924
171 Ga0495615_0000232 3300048090 Bacteria 11661
172 Ga0495626_0003447 3300048091 Bacteria 10137
173 Ga0496101_0099138 3300048904 Bacteria 2178
174 Ga0496102_0151717 3300048905 Bacteria 2178
175 Ga0496103_0018538 3300048906 Bacteria 4175
176 Ga0496106_0005351 3300048909 Bacteria 9498
177 Ga0496107_0016462 3300048910 Bacteria 5193
178 Ga0496109_0559920 3300048912 Bacteria 1078
179 Ga0496110_0045709 3300048913 Bacteria 3828
180 Ga0496110_0159822 3300048913 Bacteria 2042
181 Ga0496111_0096693 3300048914 Bacteria 2167
182 Ga0496112_0227239 3300048915 Bacteria 1821
183 Ga0496113_0001381 3300048916 Bacteria 13469
184 Ga0496114_0010243 3300048917 Bacteria 7460
185 Ga0496114_0255821 3300048917 Bacteria 1541
186 Ga0496116_0000311 3300048919 Bacteria 81431
187 Ga0496116_0011397 3300048919 Bacteria 7365
188 Ga0496117_0130324 3300048920 Bacteria 1525
189 Ga0496121_0000579 3300048924 Bacteria 68757
190 Ga0496121_0004878 3300048924 Bacteria 17616
191 Ga0496122_0008233 3300048925 Bacteria 11319
192 Ga0496122_0035852 3300048925 Bacteria 4025
193 Ga0496123_0000159 3300048926 Bacteria 136014
194 Ga0496123_0014924 3300048926 Bacteria 6404
195 Ga0496124_0002565 3300048927 Bacteria 23554
196 Ga0496124_0004409 3300048927 Bacteria 16420
197 Ga0496124_0151445 3300048927 Bacteria 1818
198 Ga0496125_0018699 3300048928 Bacteria 6570
199 Ga0496125_0147304 3300048928 Bacteria 1624
200 Ga0496126_0000077 3300048929 Bacteria 231592
201 Ga0496126_0008934 3300048929 Bacteria 10730
202 Ga0496126_0137999 3300048929 Bacteria 2101
203 Ga0501032_0024388 3300049569 Bacteria 4177
204 Ga0501032_0246761 3300049569 Bacteria 1159
205 Ga0501034_0025872 3300049571 Bacteria 5976
206 Ga0501034_0108098 3300049571 Bacteria 2773
207 Ga0501046_0239236 3300049580 Bacteria 1339
208 Ga0501080_0132579 3300049742 Bacteria 2307
209 Ga0501080_0316845 3300049742 Bacteria 1413
210 Ga0501035_0031345 3300049822 Bacteria 4842
211 Ga0501035_0323446 3300049822 Bacteria 1295
212 Ga0501044_0001187 3300049823 Bacteria 30876
213 Ga0501044_0018017 3300049823 Bacteria 7572
214 Ga0501044_0236983 3300049823 Bacteria 1770
215 nmdc:mga03683_1556_c1 3300050489 Bacteria 6842
216 nmdc:mga03683_2_c1 3300050489 Bacteria 289140
217 nmdc:mga03n38_7016_c1 3300050490 Bacteria 3960
218 nmdc:mga00v17_23873_c1 3300050491 Bacteria 3542
219 nmdc:mga00v17_23874_c1 3300050491 Bacteria 3542
220 nmdc:mga00v17_5416_c1 3300050491 Bacteria 6722
221 nmdc:mga0k408_108667_c1 3300050493 Bacteria 1638
222 nmdc:mga0k408_2794_c1 3300050493 Bacteria 9273
223 nmdc:mga0k408_2_c1 3300050493 Bacteria 395671
224 nmdc:mga06z11_111384_c1 3300050494 Bacteria 1516
225 nmdc:mga06z11_139_c1 3300050494 Bacteria 28685
226 nmdc:mga07m45_26_c1 3300050496 Bacteria 94168
227 nmdc:mga07m45_29_c1 3300050496 Bacteria 85597
228 nmdc:mga07m45_3703_c1 3300050496 Bacteria 7395
229 nmdc:mga0sz30_1416_c1 3300050516 Bacteria 7429
230 nmdc:mga0sz30_45625_c1 3300050516 Bacteria 1849
231 Ga0500643_000004 3300053087 Bacteria 857484
232 Ga0500607_000009 3300053121 Bacteria 125590
233 Ga0500607_000183 3300053121 Bacteria 55765
234 Ga0500658_0020626 3300053134 Bacteria 2490
235 Ga0500559_0000831 3300053136 Bacteria 20004
236 Ga0500559_0005849 3300053136 Bacteria 5607
237 Ga0500568_0002081 3300053139 Bacteria 12128
238 Ga0500616_0003159 3300053153 Bacteria 12847
239 Ga0500645_001022 3300053730 Bacteria 15681
240 Ga0500645_024606 3300053730 Bacteria 1840
241 Ga0500661_000564 3300055283 Bacteria 6890
242 2511129169 2510917021 Bacteria 5705459
243 2643819256 2643221560 Bacteria 4801179
244 2643835118 2643221563 Bacteria 4726935
245 2644056045 2643221608 Bacteria 4724829
246 2852655932 2852653556 Bacteria 4050083
247 2852683016 2852680915 Bacteria 4100189
248 8054307393 8054302542 Bacteria 5698134
249 Ga0307508_10081740
250 SwRhRL2b_contig_2665226
251 JGI24751J29686_10000251
252 Ga0055536_1000358
253 Ga0055536_1000785
254 Ga0055536_1004888
255 Ga0055530_10000054
256 Ga0055530_10027626
257 Ga0055531_10000890
258 Ga0055531_10003200
259 Ga0065704_10070228
260 Ga0070658_10000662
261 Ga0070658_10029030
262 Ga0070658_10189328
263 Ga0070658_10332844
264 Ga0070683_100210082
265 Ga0070666_10017775
266 Ga0070682_100256177
267 Ga0070660_100368001
268 Ga0070687_100056825
269 Ga0070668_100106412
270 Ga0070669_100000213
271 Ga0070669_100000799
272 Ga0070671_100000003
273 Ga0070671_100007726
274 Ga0070671_100058181
275 Ga0070671_100219347
276 Ga0070667_100000392
277 Ga0070667_100098565
278 Ga0070667_100233784
279 Ga0070663_100027733
280 Ga0070662_100003086
281 Ga0070684_100343829
282 Ga0070665_100000070
283 Ga0070665_100054556
284 Ga0070665_100126957
285 Ga0068855_100001523
286 Ga0068855_100003476
287 Ga0068855_100010379
288 Ga0068855_100191301
289 Ga0070664_100147783
290 Ga0068857_100165650
291 Ga0068854_100001304
292 Ga0068856_100009857
293 Ga0068856_100475285
294 Ga0068852_100000114
295 Ga0068852_100069023
296 Ga0068852_100302313
297 Ga0068852_100633281
298 Ga0068859_100135680
299 Ga0068864_100032103
300 Ga0068863_100036318
301 Ga0068863_100042492
302 Ga0068858_100039905
303 Ga0068858_100045682
304 Ga0068858_100170908
305 Ga0068862_100008530
306 Ga0068862_100062777
307 Ga0075363_100000655
308 Ga0075363_100049086
309 Ga0075364_10009321
310 Ga0075432_10004893
311 Ga0075362_10000167
312 Ga0075369_10004685
313 Ga0075369_10006232
314 Ga0075366_10000122
315 Ga0075366_10103490
316 Ga0075370_10000031
317 Ga0075370_10056948
318 Ga0097620_100135672
319 Ga0105251_10000334
320 Ga0105240_10005122
321 Ga0105240_10356097
322 Ga0105245_10064964
323 Ga0105247_10030825
324 Ga0105248_10023914
325 Ga0105248_10045104
326 Ga0105248_10154484
327 Ga0105248_10278136
328 Ga0105249_10490934
329 Ga0105246_10000847
330 Ga0157375_10047169
331 Ga0157377_10258694
332 Ga0163161_10002367
333 Ga0209675_1000131
334 Ga0209676_1000084
335 Ga0209676_1000729
336 Ga0209676_1000746
337 Ga0209676_1017911
338 Ga0209025_1006315
339 Ga0209050_1000113
340 Ga0209050_1000127
341 Ga0209050_1001889
342 Ga0209257_1000083
343 Ga0209257_1000126
344 Ga0209257_1000330
345 Ga0209257_1011185
346 Ga0207697_10054248
347 Ga0207713_1000987
348 Ga0207710_10175319
349 Ga0207647_10088974
350 Ga0207705_10000009
351 Ga0207705_10218066
352 Ga0207695_10005113
353 Ga0207695_10093905
354 Ga0207657_10131019
355 Ga0207681_10000037
356 Ga0207681_10000490
357 Ga0207650_10022540
358 Ga0207687_10226185
359 Ga0207644_10000004
360 Ga0207644_10000327
361 Ga0207644_10051290
362 Ga0207706_10003818
363 Ga0207706_10098590
364 Ga0207709_10082189
365 Ga0207711_10002900
366 Ga0207661_10280111
367 Ga0207679_10023064
368 Ga0207667_10001114
369 Ga0207667_10005357
370 Ga0207667_10023596
371 Ga0207712_10245685
372 Ga0207640_10000334
373 Ga0207658_10008312
374 Ga0207658_10128873
375 Ga0207703_10007891
376 Ga0207678_10016946
377 Ga0207702_10032439
378 Ga0207702_10045749
379 Ga0207641_10018961
380 Ga0207676_10267207
381 Ga0207674_10058433
382 Ga0207674_10173406
383 Ga0207698_10000085
384 Ga0207698_10050889
385 Ga0207698_10127749
386 Ga0268266_10003129
387 Ga0268265_10142091
388 Ga0268264_10010575
389 Ga0307405_10061931
390 Ga0307405_10104551
391 Ga0307406_10035566
392 Ga0307412_10006239
393 Ga0307412_10072216
394 Ga0307414_10000212
395 Ga0307414_10000704
396 Ga0451807_2304852
397 Ga0495627_000758
398 Ga0495650_0001475
399 Ga0495596_0000008
400 Ga0495596_0000327
401 Ga0495607_0039128
402 Ga0495607_0062778
403 Ga0495583_0006140
404 Ga0495606_0004417
405 Ga0495610_0000033
406 Ga0495610_0000116
407 Ga0495610_0003683
408 Ga0495632_0000309
409 Ga0495632_0019364
410 Ga0495643_0000048
411 Ga0495643_0027541
412 Ga0495643_0035265
413 Ga0495654_0133095
414 Ga0495609_0001350
415 Ga0495668_0000234
416 Ga0495625_0000195
417 Ga0495670_0066171
418 Ga0495681_0000822
419 Ga0495615_0000232
420 Ga0495626_0003447
421 Ga0496101_0099138
422 Ga0496102_0151717
423 Ga0496103_0018538
424 Ga0496106_0005351
425 Ga0496107_0016462
426 Ga0496109_0559920
427 Ga0496110_0045709
428 Ga0496110_0159822
429 Ga0496111_0096693
430 Ga0496112_0227239
431 Ga0496113_0001381
432 Ga0496114_0010243
433 Ga0496114_0255821
434 Ga0496116_0000311
435 Ga0496116_0011397
436 Ga0496117_0130324
437 Ga0496121_0000579
438 Ga0496121_0004878
439 Ga0496122_0008233
440 Ga0496122_0035852
441 Ga0496123_0000159
442 Ga0496123_0014924
443 Ga0496124_0002565
444 Ga0496124_0004409
445 Ga0496124_0151445
446 Ga0496125_0018699
447 Ga0496125_0147304
448 Ga0496126_0000077
449 Ga0496126_0008934
450 Ga0496126_0137999
451 Ga0501032_0024388
452 Ga0501032_0246761
453 Ga0501034_0025872
454 Ga0501034_0108098
455 Ga0501046_0239236
456 Ga0501080_0132579
457 Ga0501080_0316845
458 Ga0501035_0031345
459 Ga0501035_0323446
460 Ga0501044_0001187
461 Ga0501044_0018017
462 Ga0501044_0236983
463 nmdc:mga03683_1556_c1
464 nmdc:mga03683_2_c1
465 nmdc:mga03n38_7016_c1
466 nmdc:mga00v17_23873_c1
467 nmdc:mga00v17_23874_c1
468 nmdc:mga00v17_5416_c1
469 nmdc:mga0k408_108667_c1
470 nmdc:mga0k408_2794_c1
471 nmdc:mga0k408_2_c1
472 nmdc:mga06z11_111384_c1
473 nmdc:mga06z11_139_c1
474 nmdc:mga07m45_26_c1
475 nmdc:mga07m45_29_c1
476 nmdc:mga07m45_3703_c1
477 nmdc:mga0sz30_1416_c1
478 nmdc:mga0sz30_45625_c1
479 Ga0500643_000004
480 Ga0500607_000009
481 Ga0500607_000183
482 Ga0500658_0020626
483 Ga0500559_0000831
484 Ga0500559_0005849
485 Ga0500568_0002081
486 Ga0500616_0003159
487 Ga0500645_001022
488 Ga0500645_024606
489 Ga0500661_000564
490 2511129169
491 2643819256
492 2643835118
493 2644056045
494 2852655932
495 2852683016
496 8054307393

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01379

Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

13

229

0.94

PF03900

Porphobil_deamC

Porphobilinogen deaminase, C-terminal domain

240

313

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
5h6o-assembly1.cif.gz_A porphobilinogen deaminase from vibrio cholerae 0.9441 11 301
1ypn-assembly1.cif.gz_A reduced form hydroxymethylbilane synthase (k59q mutant) crystal structure after 2 hours in a flow cell determined by time-resolved laue diffraction 0.94 11 308
1pda-assembly1.cif.gz_A structure of porphobilinogen deaminase reveals a flexible multidomain polymerase with a single catalytic site 0.9368 9 300
4htg-assembly1.cif.gz_A porphobilinogen deaminase from arabidopsis thaliana 0.9342 12 298
2ypn-assembly1.cif.gz_A hydroxymethylbilane synthase 0.9262 9 314
ID Description Score Start End Superfamily
4htgA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9513 108 204 3.40.190.10
af_F1R6A1_237_360_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9456 235 284 3.30.160.40
af_Q54P93_232_322_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9418 226 301 3.30.160.40
af_O94048_239_331_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9227 235 301 3.30.160.40
5h6oA03 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9224 235 301 3.30.160.40
ID Description Score Start End GO Terms
AF-A0A2N3B8D4-F1-model_v4 Hydroxymethylbilane synthase (EC 2.5.1.61) 0.9944 11 232 GO:0004418
GO:0005737
GO:0006782
AF-A0A350KUL8-F1-model_v4 deleted 0.9919 128 314
AF-A0A520HUW2-F1-model_v4 Hydroxymethylbilane synthase (EC 2.5.1.61) 0.9918 10 226 GO:0004418
GO:0005737
GO:0006782
AF-A0A3B0RAH1-F1-model_v4 hydroxymethylbilane synthase (EC 2.5.1.61) 0.9871 8 252 GO:0004418
GO:0005737
GO:0006783
AF-A0A350KUL8-F1-model_v4 deleted 0.9867 128 314

Map