F354565

General Info

Members Datasets Scaffolds Average Seq Length
242 142 484 342

Family's Representative Sequence

Representative Sequence 3300006846|Ga0075430_100057873|Ga0075430_1000578731
Length 389
Sequence MIRTALGLVRDLWQFVALSCSSRTSLAAENLFLRKQLAFYVERNVRPRRLDDATRIALVVLAHAIDWRQLLIVVRPDTLVRWHRQGFRLFWRWKSRRPGRPRIPPDLQDVIAPMARANHTWGEERIAAELLLKLGVSVSPRTVRRYMRRPRPSRPRSSMQTWRTFVRNHAPETLACDFFVVVTATFRLVYVFLVLDIGMRRIRHWNVTEHPTAEWTVQQFRNCLTGDEPYRFLVHDRDAVFSPGVDDAVRSMNLRVLTTPVRVPQANTFCERLIGTARRECLDHVIPLNERHLRRILAEWVRHYNRGRPHASLGPGIPEPLARTCHDRRVTTFRPDIGLPRHRFLTVSIMSTGFSRSPRDFLAEYWPRPVCPTDRAPRYRAESRSASAQ

Samples

Sample ID Description Type Environment
1 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
19 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
44 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
61 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
62 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
63 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
64 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
65 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
66 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
67 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
68 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
69 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
70 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
71 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
72 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
73 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
74 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
75 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
76 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
77 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
78 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
79 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
80 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
83 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
84 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
85 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
86 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
87 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
88 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
89 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
90 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
91 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
92 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
93 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
94 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
95 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
96 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
97 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
98 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
99 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
100 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
101 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
102 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
103 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
104 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
105 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
106 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
107 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
108 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
109 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
110 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
111 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
112 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
113 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
114 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
115 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
116 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
117 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
118 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
119 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
120 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
121 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
122 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
123 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
124 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
125 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
126 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
127 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
136 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
137 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
138 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
139 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
140 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
141 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
142 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 99.59
Metatranscriptomes 0
Isolates 0.41

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.41
Nodule 0.41
Rhizoplane 2.89
Rhizosphere 96.28
Stem 0
Stem Tuber 0
Unclassified 11.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075430_100057873 3300006846 Bacteria 3259
2 Ga0070683_100238715 3300005329 Bacteria 1729
3 Ga0070690_100233715 3300005330 Bacteria 1294
4 Ga0070668_100480680 3300005347 Bacteria 1072
5 Ga0070714_100402315 3300005435 Bacteria 1294
6 Ga0070713_100091718 3300005436 Bacteria 2614
7 Ga0070710_10146087 3300005437 Bacteria 1454
8 Ga0070710_10177436 3300005437 Bacteria 1331
9 Ga0070694_100136791 3300005444 Bacteria 1776
10 Ga0070708_100067193 3300005445 Bacteria 3218
11 Ga0070678_100106884 3300005456 Bacteria 2181
12 Ga0070707_100043897 3300005468 Bacteria 4279
13 Ga0070698_100304803 3300005471 Bacteria 1523
14 Ga0070699_100052009 3300005518 Bacteria 3546
15 Ga0070697_100196432 3300005536 Bacteria 1714
16 Ga0070672_100370498 3300005543 Bacteria 1224
17 Ga0070695_100053840 3300005545 Bacteria 2588
18 Ga0070665_100171508 3300005548 Archaea 2170
19 Ga0070665_100328941 3300005548 Bacteria 1533
20 Ga0068866_10040928 3300005718 Bacteria 2296
21 Ga0068861_100200523 3300005719 Bacteria 1674
22 Ga0068863_100446133 3300005841 Bacteria 1269
23 Ga0068860_100307950 3300005843 Bacteria 1553
24 Ga0068862_100255739 3300005844 Bacteria 1597
25 Ga0081455_10083417 3300005937 Bacteria 2612
26 Ga0070716_100167422 3300006173 Unclassified 1431
27 Ga0075428_100094278 3300006844 Plasmid 3264
28 Ga0075428_100249683 3300006844 Unclassified 1912
29 Ga0075428_100539405 3300006844 Unclassified 1247
30 Ga0075430_100025661 3300006846 Bacteria 5015
31 Ga0075431_100050499 3300006847 Bacteria 4288
32 Ga0075431_100076537 3300006847 Bacteria 3453
33 Ga0075431_100169265 3300006847 Bacteria 2245
34 Ga0075431_100189797 3300006847 Bacteria 2106
35 Ga0075431_100192108 3300006847 Unclassified 2092
36 Ga0075431_100349577 3300006847 Bacteria 1486
37 Ga0075433_10031145 3300006852 Unclassified 4558
38 Ga0075433_10055803 3300006852 Bacteria 3449
39 Ga0075433_10061182 3300006852 Bacteria 3298
40 Ga0075433_10062600 3300006852 Bacteria 3258
41 Ga0075433_10157283 3300006852 Bacteria 2022
42 Ga0075434_100008983 3300006871 Bacteria 9308
43 Ga0075434_100018397 3300006871 Bacteria 6750
44 Ga0075434_100051573 3300006871 Bacteria 4089
45 Ga0075434_100060854 3300006871 Unclassified 3756
46 Ga0075429_100026767 3300006880 Bacteria 5007
47 Ga0075429_100212183 3300006880 Bacteria 1696
48 Ga0075429_100240589 3300006880 Bacteria 1585
49 Ga0075436_100098828 3300006914 Bacteria 2032
50 Ga0075436_100197104 3300006914 Bacteria 1426
51 Ga0075436_100269007 3300006914 Bacteria 1217
52 Ga0075435_100043980 3300007076 Bacteria 3577
53 Ga0075435_100167416 3300007076 Unclassified 1853
54 Ga0075435_100222588 3300007076 Unclassified 1602
55 Ga0075435_100229986 3300007076 Bacteria 1575
56 Ga0075435_100265347 3300007076 Bacteria 1463
57 Ga0099794_10009172 3300007265 Bacteria 4143
58 Ga0099794_10029316 3300007265 Bacteria 2564
59 Ga0099794_10054155 3300007265 Bacteria 1936
60 Ga0111539_10199558 3300009094 Bacteria 2333
61 Ga0111539_10239526 3300009094 Bacteria 2112
62 Ga0111539_10276809 3300009094 Bacteria 1953
63 Ga0105245_10206223 3300009098 Bacteria 1890
64 Ga0105245_10409456 3300009098 Archaea 1357
65 Ga0105247_10065338 3300009101 Bacteria 2263
66 Ga0114129_10034528 3300009147 Bacteria 7144
67 Ga0114129_10168304 3300009147 Bacteria 2989
68 Ga0114129_10245048 3300009147 Unclassified 2408
69 Ga0114129_10298470 3300009147 Bacteria 2148
70 Ga0114129_10386913 3300009147 Bacteria 1846
71 Ga0114129_10505496 3300009147 Bacteria 1578
72 Ga0114129_10984879 3300009147 Bacteria 1063
73 Ga0105248_10073802 3300009177 Bacteria 3834
74 Ga0105237_10226496 3300009545 Bacteria 1870
75 Ga0105237_10427381 3300009545 Bacteria 1330
76 Ga0105239_10253998 3300010375 Unclassified 1975
77 Ga0157378_10255767 3300013297 Bacteria 1678
78 Ga0157375_10611604 3300013308 Unclassified 1248
79 Ga0157379_10211574 3300014968 Archaea 1755
80 Ga0157379_10260349 3300014968 Bacteria 1576
81 Ga0163161_10244641 3300017792 Bacteria 1396
82 Ga0207692_10262223 3300025898 Bacteria 1039
83 Ga0207688_10083355 3300025901 Bacteria 1828
84 Ga0207671_10138789 3300025914 Bacteria 1871
85 Ga0207693_10010874 3300025915 Bacteria 7383
86 Ga0207693_10129347 3300025915 Bacteria 1985
87 Ga0207693_10158194 3300025915 Bacteria 1782
88 Ga0207663_10170462 3300025916 Bacteria 1545
89 Ga0207687_10320549 3300025927 Archaea 1254
90 Ga0207664_10162974 3300025929 Bacteria 1903
91 Ga0207686_10060769 3300025934 Bacteria 2394
92 Ga0207686_10259313 3300025934 Unclassified 1274
93 Ga0207669_10161664 3300025937 Bacteria 1582
94 Ga0207665_10061874 3300025939 Bacteria 2539
95 Ga0207665_10178305 3300025939 Bacteria 1538
96 Ga0207691_10214700 3300025940 Bacteria 1670
97 Ga0207651_10168285 3300025960 Bacteria 1726
98 Ga0207678_10256568 3300026067 Bacteria 1498
99 Ga0207675_100187336 3300026118 Bacteria 1984
100 Ga0209588_1027534 3300027671 Archaea 1809
101 Ga0268266_10161728 3300028379 Archaea 2026
102 Ga0265314_10039888 3300031711 Bacteria 3377
103 Ga0373929_0021365 3300035085 Bacteria 1312
104 Ga0373940_0017715 3300035088 Bacteria 1778
105 Ga0373944_0072602 3300035089 Bacteria 1123
106 Ga0373951_0020900 3300035091 Bacteria 1501
107 Ga0373923_0121494 3300035111 Bacteria 1167
108 Ga0373936_0053044 3300035113 Bacteria 1643
109 Ga0373945_0035810 3300035116 Bacteria 1775
110 Ga0373957_0089105 3300035120 Bacteria 1224
111 Ga0373960_0033671 3300035121 Bacteria 1445
112 Ga0373946_0151366 3300035171 Bacteria 1082
113 Ga0373955_0012733 3300035172 Bacteria 4051
114 Ga0373955_0062854 3300035172 Bacteria 2054
115 Ga0373942_0024714 3300035207 Bacteria 1543
116 Ga0373924_0033379 3300035410 Bacteria 2077
117 Ga0373924_0080550 3300035410 Bacteria 1384
118 Ga0373931_0223137 3300035691 Bacteria 1135
119 Ga0373935_0181986 3300035692 Bacteria 1443
120 Ga0373927_0271777 3300035695 Bacteria 1114
121 Ga0373933_0200310 3300035724 Bacteria 1277
122 Ga0373933_0223088 3300035724 Bacteria 1209
123 Ga0373933_0299140 3300035724 Bacteria 1041
124 Ga0373933_0372047 3300035724 Unclassified 930
125 Ga0373947_0265815 3300035725 Bacteria 1137
126 Ga0373937_0260928 3300036401 Bacteria 1634
127 Ga0373937_0428529 3300036401 Bacteria 1255
128 Ga0373925_0036556 3300037068 Bacteria 3624
129 Ga0373925_0088071 3300037068 Bacteria 2370
130 Ga0373925_0169423 3300037068 Bacteria 1723
131 Ga0395898_0437026 3300037466 Bacteria 1247
132 Ga0439453_0015748 3300041408 Unclassified 1311
133 Ga0439435_0022692 3300042436 Bacteria 1641
134 Ga0451577_0152042 3300042876 Unclassified 2083
135 Ga0451577_0313637 3300042876 Bacteria 1422
136 Ga0451577_0410937 3300042876 Bacteria 1228
137 Ga0451576_0649253 3300045051 Unclassified 1109
138 Ga0495592_0096864 3300046454 Unclassified 2108
139 Ga0495592_0185904 3300046454 Bacteria 1411
140 Ga0495603_0200390 3300046455 Bacteria 1153
141 Ga0495629_0115160 3300046459 Bacteria 1873
142 Ga0495629_0143587 3300046459 Unclassified 1660
143 Ga0495653_0112735 3300046463 Bacteria 1951
144 Ga0495653_0117174 3300046463 Bacteria 1903
145 Ga0495653_0153395 3300046463 Bacteria 1607
146 Ga0495580_0150032 3300046472 Unclassified 1615
147 Ga0495580_0207003 3300046472 Bacteria 1350
148 Ga0495582_0077659 3300046473 Bacteria 1841
149 Ga0495582_0157161 3300046473 Bacteria 1292
150 Ga0495664_0068300 3300046477 Bacteria 2121
151 Ga0495594_0151303 3300046499 Bacteria 1317
152 Ga0495608_0151360 3300046511 Bacteria 1478
153 Ga0495618_0137086 3300046514 Bacteria 1565
154 Ga0495618_0160665 3300046514 Unclassified 1432
155 Ga0495618_0224835 3300046514 Bacteria 1183
156 Ga0495630_0360048 3300046517 Bacteria 1113
157 Ga0495666_0130475 3300046526 Bacteria 1174
158 Ga0495666_0134639 3300046526 Bacteria 1153
159 Ga0495652_0169056 3300046529 Bacteria 1689
160 Ga0495665_0098668 3300046531 Bacteria 1533
161 Ga0495640_0050549 3300046533 Bacteria 2863
162 Ga0495640_0204132 3300046533 Bacteria 1251
163 Ga0495587_0000437 3300046536 Bacteria 29203
164 Ga0495587_0165935 3300046536 Bacteria 1255
165 Ga0495645_0253213 3300046543 Bacteria 1169
166 Ga0495667_0133730 3300046559 Bacteria 1599
167 Ga0495667_0255240 3300046559 Bacteria 1115
168 Ga0495656_0027618 3300046615 Bacteria 2268
169 Ga0495634_0002977 3300046642 Bacteria 13815
170 Ga0495635_0079650 3300046663 Bacteria 2242
171 Ga0495635_0114554 3300046663 Bacteria 1840
172 Ga0495659_0042497 3300046664 Bacteria 1627
173 Ga0495588_0120098 3300046674 Bacteria 1385
174 Ga0495647_0056684 3300046681 Bacteria 1536
175 Ga0495658_0281974 3300046683 Bacteria 1048
176 Ga0495613_0014952 3300046689 Bacteria 5760
177 Ga0495613_0320616 3300046689 Bacteria 1069
178 Ga0495624_0226300 3300046690 Bacteria 1133
179 Ga0495600_0059559 3300046809 Bacteria 2494
180 Ga0495600_0249240 3300046809 Unclassified 1130
181 Ga0495600_0282445 3300046809 Bacteria 1050
182 Ga0495581_0079342 3300047315 Bacteria 1899
183 Ga0495604_0315198 3300047317 Bacteria 1047
184 Ga0495674_0173669 3300047319 Bacteria 1797
185 Ga0495674_0346464 3300047319 Bacteria 1206
186 Ga0495676_0118934 3300047321 Bacteria 1926
187 Ga0495685_077095 3300047447 Bacteria 1112
188 Ga0495684_0130721 3300047471 Unclassified 1886
189 Ga0495684_0244484 3300047471 Bacteria 1307
190 Ga0495593_0089324 3300047673 Bacteria 1587
191 Ga0495593_0161383 3300047673 Unclassified 1131
192 Ga0495614_0079948 3300048089 Bacteria 1415
193 Ga0496102_0474185 3300048905 Bacteria 1172
194 Ga0496103_0033439 3300048906 Bacteria 3141
195 Ga0496104_0005515 3300048907 Bacteria 11081
196 Ga0496108_0133581 3300048911 Bacteria 2133
197 Ga0496112_0274786 3300048915 Bacteria 1632
198 Ga0496113_0103864 3300048916 Bacteria 2204
199 Ga0496114_0269001 3300048917 Bacteria 1501
200 nmdc:mga05p37_113807_c1 3300050507 Unclassified 3326
201 nmdc:mga05p37_123171_c1 3300050507 Bacteria 3185
202 nmdc:mga05p37_214578_c1 3300050507 Bacteria 2325
203 nmdc:mga05p37_329756_c1 3300050507 Bacteria 1803
204 nmdc:mga05p37_348634_c1 3300050507 Bacteria 1744
205 nmdc:mga05p37_394768_c1 3300050507 Unclassified 1617
206 nmdc:mga05p37_51490_c1 3300050507 Bacteria 5064
207 nmdc:mga05p37_80387_c1 3300050507 Bacteria 4015
208 nmdc:mga09592_22792_c1 3300050508 Bacteria 5167
209 nmdc:mga09592_56319_c1 3300050508 Bacteria 3323
210 nmdc:mga0qj67_46864_c1 3300050509 Bacteria 3414
211 nmdc:mga06r32_130696_c1 3300050510 Bacteria 2483
212 nmdc:mga06r32_376503_c1 3300050510 Bacteria 1403
213 nmdc:mga06r32_91665_c1 3300050510 Bacteria 2970
214 nmdc:mga08y16_351000_c1 3300050511 Bacteria 1515
215 nmdc:mga08y16_432571_c1 3300050511 Bacteria 1344
216 nmdc:mga0n895_338806_c1 3300050512 Bacteria 1523
217 nmdc:mga0n895_35062_c1 3300050512 Plasmid 4835
218 nmdc:mga0n895_6396_c1 3300050512 Bacteria 9998
219 nmdc:mga0rr50_130049_c1 3300050513 Bacteria 2015
220 nmdc:mga0rr50_183235_c1 3300050513 Bacteria 1713
221 nmdc:mga0rr50_512463_c1 3300050513 Unclassified 1020
222 nmdc:mga0rr50_65802_c1 3300050513 Bacteria 2747
223 nmdc:mga0rr50_69532_c2 3300050513 Unclassified 1995
224 nmdc:mga08x19_253334_c1 3300050514 Bacteria 1216
225 nmdc:mga08x19_317531_c1 3300050514 Bacteria 1084
226 nmdc:mga0a205_213457_c1 3300050515 Unclassified 1817
227 nmdc:mga0a205_23274_c1 3300050515 Bacteria 5875
228 nmdc:mga0a205_2442_c1 3300050515 Bacteria 16396
229 nmdc:mga0a205_248506_c1 3300050515 Bacteria 1659
230 nmdc:mga0a205_317020_c1 3300050515 Bacteria 1430
231 nmdc:mga0a205_42929_c1 3300050515 Bacteria 4359
232 nmdc:mga0a205_430022_c1 3300050515 Bacteria 1182
233 Ga0495601_0013008 3300053077 Bacteria 4999
234 Ga0495601_0230177 3300053077 Bacteria 1210
235 Ga0495595_0028071 3300053084 Bacteria 2511
236 Ga0495595_0045672 3300053084 Bacteria 2015
237 Ga0495619_0005492 3300053085 Bacteria 8039
238 Ga0495619_0025489 3300053085 Bacteria 3798
239 Ga0495619_0172767 3300053085 Bacteria 1494
240 Ga0495619_0193560 3300053085 Bacteria 1407
241 Ga0500566_0157622 3300053094 Bacteria 1186
242 8056685877 8056681323 Bacteria 8472857
243 Ga0075430_100057873
244 Ga0070683_100238715
245 Ga0070690_100233715
246 Ga0070668_100480680
247 Ga0070714_100402315
248 Ga0070713_100091718
249 Ga0070710_10146087
250 Ga0070710_10177436
251 Ga0070694_100136791
252 Ga0070708_100067193
253 Ga0070678_100106884
254 Ga0070707_100043897
255 Ga0070698_100304803
256 Ga0070699_100052009
257 Ga0070697_100196432
258 Ga0070672_100370498
259 Ga0070695_100053840
260 Ga0070665_100171508
261 Ga0070665_100328941
262 Ga0068866_10040928
263 Ga0068861_100200523
264 Ga0068863_100446133
265 Ga0068860_100307950
266 Ga0068862_100255739
267 Ga0081455_10083417
268 Ga0070716_100167422
269 Ga0075428_100094278
270 Ga0075428_100249683
271 Ga0075428_100539405
272 Ga0075430_100025661
273 Ga0075431_100050499
274 Ga0075431_100076537
275 Ga0075431_100169265
276 Ga0075431_100189797
277 Ga0075431_100192108
278 Ga0075431_100349577
279 Ga0075433_10031145
280 Ga0075433_10055803
281 Ga0075433_10061182
282 Ga0075433_10062600
283 Ga0075433_10157283
284 Ga0075434_100008983
285 Ga0075434_100018397
286 Ga0075434_100051573
287 Ga0075434_100060854
288 Ga0075429_100026767
289 Ga0075429_100212183
290 Ga0075429_100240589
291 Ga0075436_100098828
292 Ga0075436_100197104
293 Ga0075436_100269007
294 Ga0075435_100043980
295 Ga0075435_100167416
296 Ga0075435_100222588
297 Ga0075435_100229986
298 Ga0075435_100265347
299 Ga0099794_10009172
300 Ga0099794_10029316
301 Ga0099794_10054155
302 Ga0111539_10199558
303 Ga0111539_10239526
304 Ga0111539_10276809
305 Ga0105245_10206223
306 Ga0105245_10409456
307 Ga0105247_10065338
308 Ga0114129_10034528
309 Ga0114129_10168304
310 Ga0114129_10245048
311 Ga0114129_10298470
312 Ga0114129_10386913
313 Ga0114129_10505496
314 Ga0114129_10984879
315 Ga0105248_10073802
316 Ga0105237_10226496
317 Ga0105237_10427381
318 Ga0105239_10253998
319 Ga0157378_10255767
320 Ga0157375_10611604
321 Ga0157379_10211574
322 Ga0157379_10260349
323 Ga0163161_10244641
324 Ga0207692_10262223
325 Ga0207688_10083355
326 Ga0207671_10138789
327 Ga0207693_10010874
328 Ga0207693_10129347
329 Ga0207693_10158194
330 Ga0207663_10170462
331 Ga0207687_10320549
332 Ga0207664_10162974
333 Ga0207686_10060769
334 Ga0207686_10259313
335 Ga0207669_10161664
336 Ga0207665_10061874
337 Ga0207665_10178305
338 Ga0207691_10214700
339 Ga0207651_10168285
340 Ga0207678_10256568
341 Ga0207675_100187336
342 Ga0209588_1027534
343 Ga0268266_10161728
344 Ga0265314_10039888
345 Ga0373929_0021365
346 Ga0373940_0017715
347 Ga0373944_0072602
348 Ga0373951_0020900
349 Ga0373923_0121494
350 Ga0373936_0053044
351 Ga0373945_0035810
352 Ga0373957_0089105
353 Ga0373960_0033671
354 Ga0373946_0151366
355 Ga0373955_0012733
356 Ga0373955_0062854
357 Ga0373942_0024714
358 Ga0373924_0033379
359 Ga0373924_0080550
360 Ga0373931_0223137
361 Ga0373935_0181986
362 Ga0373927_0271777
363 Ga0373933_0200310
364 Ga0373933_0223088
365 Ga0373933_0299140
366 Ga0373933_0372047
367 Ga0373947_0265815
368 Ga0373937_0260928
369 Ga0373937_0428529
370 Ga0373925_0036556
371 Ga0373925_0088071
372 Ga0373925_0169423
373 Ga0395898_0437026
374 Ga0439453_0015748
375 Ga0439435_0022692
376 Ga0451577_0152042
377 Ga0451577_0313637
378 Ga0451577_0410937
379 Ga0451576_0649253
380 Ga0495592_0096864
381 Ga0495592_0185904
382 Ga0495603_0200390
383 Ga0495629_0115160
384 Ga0495629_0143587
385 Ga0495653_0112735
386 Ga0495653_0117174
387 Ga0495653_0153395
388 Ga0495580_0150032
389 Ga0495580_0207003
390 Ga0495582_0077659
391 Ga0495582_0157161
392 Ga0495664_0068300
393 Ga0495594_0151303
394 Ga0495608_0151360
395 Ga0495618_0137086
396 Ga0495618_0160665
397 Ga0495618_0224835
398 Ga0495630_0360048
399 Ga0495666_0130475
400 Ga0495666_0134639
401 Ga0495652_0169056
402 Ga0495665_0098668
403 Ga0495640_0050549
404 Ga0495640_0204132
405 Ga0495587_0000437
406 Ga0495587_0165935
407 Ga0495645_0253213
408 Ga0495667_0133730
409 Ga0495667_0255240
410 Ga0495656_0027618
411 Ga0495634_0002977
412 Ga0495635_0079650
413 Ga0495635_0114554
414 Ga0495659_0042497
415 Ga0495588_0120098
416 Ga0495647_0056684
417 Ga0495658_0281974
418 Ga0495613_0014952
419 Ga0495613_0320616
420 Ga0495624_0226300
421 Ga0495600_0059559
422 Ga0495600_0249240
423 Ga0495600_0282445
424 Ga0495581_0079342
425 Ga0495604_0315198
426 Ga0495674_0173669
427 Ga0495674_0346464
428 Ga0495676_0118934
429 Ga0495685_077095
430 Ga0495684_0130721
431 Ga0495684_0244484
432 Ga0495593_0089324
433 Ga0495593_0161383
434 Ga0495614_0079948
435 Ga0496102_0474185
436 Ga0496103_0033439
437 Ga0496104_0005515
438 Ga0496108_0133581
439 Ga0496112_0274786
440 Ga0496113_0103864
441 Ga0496114_0269001
442 nmdc:mga05p37_113807_c1
443 nmdc:mga05p37_123171_c1
444 nmdc:mga05p37_214578_c1
445 nmdc:mga05p37_329756_c1
446 nmdc:mga05p37_348634_c1
447 nmdc:mga05p37_394768_c1
448 nmdc:mga05p37_51490_c1
449 nmdc:mga05p37_80387_c1
450 nmdc:mga09592_22792_c1
451 nmdc:mga09592_56319_c1
452 nmdc:mga0qj67_46864_c1
453 nmdc:mga06r32_130696_c1
454 nmdc:mga06r32_376503_c1
455 nmdc:mga06r32_91665_c1
456 nmdc:mga08y16_351000_c1
457 nmdc:mga08y16_432571_c1
458 nmdc:mga0n895_338806_c1
459 nmdc:mga0n895_35062_c1
460 nmdc:mga0n895_6396_c1
461 nmdc:mga0rr50_130049_c1
462 nmdc:mga0rr50_183235_c1
463 nmdc:mga0rr50_512463_c1
464 nmdc:mga0rr50_65802_c1
465 nmdc:mga0rr50_69532_c2
466 nmdc:mga08x19_253334_c1
467 nmdc:mga08x19_317531_c1
468 nmdc:mga0a205_213457_c1
469 nmdc:mga0a205_23274_c1
470 nmdc:mga0a205_2442_c1
471 nmdc:mga0a205_248506_c1
472 nmdc:mga0a205_317020_c1
473 nmdc:mga0a205_42929_c1
474 nmdc:mga0a205_430022_c1
475 Ga0495601_0013008
476 Ga0495601_0230177
477 Ga0495595_0028071
478 Ga0495595_0045672
479 Ga0495619_0005492
480 Ga0495619_0025489
481 Ga0495619_0172767
482 Ga0495619_0193560
483 Ga0500566_0157622
484 8056685877

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13683

rve_3

Integrase core domain

253

318

0.93

PF13565

HTH_32

Homeodomain-like domain

77

147

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vsl-assembly1.cif.gz_A-2 asv integrase core domain d64n mutation with zinc cation 0.8489 165 273
6qbv-assembly1.cif.gz_B structure of the htlv-2 integrase catalytic core domain in complex with magnesium (dimeric form) 0.847 163 301
1c1a-assembly1.cif.gz_B crystal structure of rsv two-domain integrase 0.8409 164 299
1c0m-assembly1.cif.gz_A crystal structure of rsv two-domain integrase 0.8404 163 298
5cz2-assembly1.cif.gz_B crystal structure of a two-domain fragment of mmtv integrase 0.832 164 303
ID Description Score Start End Superfamily
af_A4IAI4_1_593_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.9114 169 201 2.130.10.10
af_P9WKH9_102_261_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8939 164 308 3.30.420.10
af_Q8IAU7_736_1093_2.140.10.30 Mainly Beta;8 Propeller;Methanol Dehydrogenase; Chain A;Dipeptidylpeptidase IV, N-terminal domain 0.8921 167 201 2.140.10.30
af_I6YC39_133_303_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8921 164 308 3.30.420.10
af_P0CF80_124_283_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8901 164 308 3.30.420.10
ID Description Score Start End GO Terms
AF-A0LAX8-F1-model_v4 Transposase, IS3 0.9641 168 297 GO:0003676
GO:0015074
AF-G2KUX6-F1-model_v4 Integrase catalytic domain-containing protein 0.9568 167 303 GO:0003676
GO:0015074
AF-A0A2G2K183-F1-model_v4 deleted 0.9554 167 308
AF-A0A2V9YIW0-F1-model_v4 Integrase 0.9521 184 274 GO:0003676
GO:0015074
AF-Q6N5J4-F1-model_v4 Integrase 0.951 164 308 GO:0003676
GO:0015074

Map