F354228

General Info

Members Datasets Scaffolds Average Seq Length
241 207 482 643

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2946053406|2946053909
Length 712
Sequence EHLNYLLKNLTNRPGVLPRKKSLSPASLREIINFCPAAFLVRENEIGPLCLRMEADLGLSTQRYPFAYDPAEPFVSRLGEWVADVFYDILPEFGFEVRDEQIFMAYQLERAYGDKKTIMAEAGVGTGKTLVYLLYAVCYARYTGKPAVIACADESLIEQLVKPGGDIAKLAAHLDLEVDARLGKSPDQYVCLNKLSAVRFADEDAPVIEEVHESLPDFVNTPGTLQAFHPYGDRKQYPHLNDRQWNKINWDPFQDCFVCPKRQRCGLTLSRDHYRRSKDIIICSHDYYMEHVWTYDARKREGQLPLLPDHSSVVFDEGHLLEEAALNALSYKLKHRIFEELVTRLLEGEIRESLAERVDEAIESSERLFALLDTYTVAIPGSERKEVRVEPPLLREIERLTSVLDAIGEELVFESGLFSLDGYQMRVVEEHLDMIQSALALFRKEDGYICWAEESEDETTLSIMPRTVKEMLNERVFNTGIPIVFSSATLSVDSSFRYVADSLGIDDFVSFSVASPYDYADKMKMKITDEALPGHPENENRMRDAVSMLQESGGRALILFRTMEELRAFKQDIVHVPEAEGLRFMYEGDREISDLIAAFQQDEESVLCSVNLWEGLDVPGPSLSNVMIWSLPYPPQDPVFNAKRSASAAPYEEIDLPYMLLRVKQGLGRLIRTSTDSGSAVILDESLYTKKEAKDRIAALLPEGVEWTTLTH

Samples

Sample ID Description Type Environment
1 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
7 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
8 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
11 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
12 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
13 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
14 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
15 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
16 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
17 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
18 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
19 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
20 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
22 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300030083 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JPPOOL-T1 Metagenome Unclassified
26 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
27 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
28 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
29 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
30 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
31 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
32 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
33 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
34 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
35 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
36 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
37 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
38 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
39 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
40 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
41 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
42 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
43 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
44 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
45 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
46 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
47 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
48 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
49 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
50 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
51 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
52 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
53 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
54 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
55 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
56 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
57 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
58 2551306519 Bacillus sp. WBUNB004 Isolate Rhizosphere
59 2554235283 Bacillus safensis VK Isolate Rhizosphere
60 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
61 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
62 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
63 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
64 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
65 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
66 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
67 2643221729 Bacillus sp. Root11 Isolate Unclassified
68 2643221730 Bacillus sp. Root131 Isolate Unclassified
69 2643221731 Bacillus sp. Root147 Isolate Unclassified
70 2643221732 Bacillus sp. Root239 Isolate Unclassified
71 2643221735 Bacillus sp. Root920 Isolate Unclassified
72 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
73 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
74 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
75 2684622632 Bacillus cereus 905 Isolate Unclassified
76 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
77 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
78 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
79 2695420987 Bacillus thuringiensis KNU-07 Isolate Unclassified
80 2703719227 Bacillus mycoides GOE6 Isolate Rhizosphere
81 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
82 2718218445 Bacillus sp. B25(2016b) Isolate Rhizosphere
83 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
84 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
85 2738541358 Bacillus sp. OV752 Isolate Unclassified
86 2738543006 Bacillus sp. OK077 Isolate Unclassified
87 2738543010 Bacillus sp. YR335 Isolate Unclassified
88 2738543017 Bacillus sp. OV186 Isolate Unclassified
89 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
90 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
91 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
92 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
93 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
94 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
95 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
96 2811994870 Bacillus sp. JB4 Isolate Unclassified
97 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
98 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
99 2818991441 Niallia circulans 3243 Isolate Rhizosphere
100 2818991443 Bacillus thuringiensis 1230 Isolate Unclassified
101 2818991459 Paenibacillus sp. 597 Isolate Unclassified
102 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
103 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
104 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
105 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
106 2831905167 Ammoniphilus oxalaticus RAOx-1 Isolate Rhizosphere
107 2842682962 Bacillus sp. R-72492 Isolate Unclassified
108 2842882022 Bacillus sp. R-71893 Isolate Unclassified
109 2849139964 Bacillus sp. R-71875 Isolate Unclassified
110 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
111 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
112 2857472729 Cohnella sp. R-74144 Isolate Unclassified
113 2857581216 Bacillus sp. R-71922 Isolate Unclassified
114 2857586860 Bacillus sp. R-71935 Isolate Unclassified
115 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
116 2860837431 Bacillus sp. WR11 Isolate Unclassified
117 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
118 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
119 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
120 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
121 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
122 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
123 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
124 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
125 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
126 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
127 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
128 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
129 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
130 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
131 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
132 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
133 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
134 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
135 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
136 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
137 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
138 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
139 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
140 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
141 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
142 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
143 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
144 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
145 2919720352 Priestia megaterium 4340 Isolate Unclassified
146 2919726948 Bacillus pumilus 4489 Isolate Unclassified
147 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
148 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
149 2929004312 Priestia megaterium 1104 Isolate Unclassified
150 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
151 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
152 2929233124 Bacillus sp. R-74298 Hybrid assembly Isolate Unclassified
153 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
154 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
155 2938917290 Bacillus sp. CR71 Isolate Unclassified
156 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
157 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
158 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
159 2947426588 Bacillus sp. RZ2MS9 Isolate Rhizosphere
160 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
161 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
162 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
163 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
164 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
165 2964375228 Anaerobacillus alkaliphilus B16-10 Isolate Rhizosphere
166 2965761152 Bacillus sp. COPE52 Isolate Unclassified
167 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
168 2969141011 Bacillus velezensis MH25 Isolate Unclassified
169 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
170 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
171 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
172 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
173 2979083700 Bacillus toyonensis SORGH_AS 407 Isolate Unclassified
174 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
175 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
176 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
177 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
178 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
179 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
180 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
181 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
182 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
183 3006826541 Bacillus haikouensis CrR16 Isolate Unclassified
184 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
185 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
186 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
187 3006978542 Bacillus sp. FJAT-49705 Isolate Rhizosphere
188 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
189 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
190 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
191 8022621104 Bacillus sp. PIC28 Isolate Rhizosphere
192 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
193 8022653035 Bacillus sp. Rc4 Isolate Unclassified
194 8022792930 Bacillus sp. Xin Isolate Rhizosphere
195 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
196 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
197 8023438354 Bacillus sp. BH2 Isolate Unclassified
198 8023444577 Bacillus sp. BH32 Isolate Unclassified
199 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
200 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere
201 8054280661 Metabacillus kandeliae GX 13764 Isolate Rhizosphere
202 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
203 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
204 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
205 8057582654 Bacillus arachidis YX15 Isolate Rhizosphere
206 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere
207 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 33.2
Metatranscriptomes 1.24
Isolates 65.56

Biome Distribution

Category Percentage (%)
Aerial Root 0.83
Bulb 0
Endosphere 13.69
Nodule 1.24
Rhizoplane 5.39
Rhizosphere 38.59
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1003862 3300002987 Bacteria 5139
2 JGI25159J45721_1008961 3300002987 Bacteria 2687
3 JGI25151J46595_10000006 3300003187 Bacteria 419711
4 JGI25151J46595_10000029 3300003187 Bacteria 205878
5 JGI25151J46595_10000727 3300003187 Bacteria 27386
6 JGI25151J46595_10005249 3300003187 Bacteria 6717
7 JGI25151J46595_10029130 3300003187 Bacteria 2190
8 rootH1_10009612 3300003316 Bacteria 12041
9 rootL2_10101454 3300003322 Bacteria 5446
10 Ga0006562J51391_1000100 3300003578 Bacteria 11837
11 Ga0006562J51391_1003192 3300003578 Bacteria 2028
12 Ga0055532_1000064 3300003758 Bacteria 143144
13 Ga0055532_1000724 3300003758 Bacteria 12225
14 Ga0055528_1003089 3300003790 Bacteria 8547
15 Ga0055541_1004274 3300003841 Bacteria 2611
16 Ga0070671_100048101 3300005355 Bacteria 3546
17 Ga0105251_10017932 3300009011 Bacteria 3780
18 Ga0105251_10028505 3300009011 Bacteria 2820
19 Ga0105244_10014230 3300009036 Bacteria 4611
20 Ga0105250_10001923 3300009092 Bacteria 10774
21 Ga0105250_10002058 3300009092 Bacteria 10331
22 Ga0105246_10025860 3300011119 Bacteria 3828
23 Ga0209566_100322 3300025225 Bacteria 43510
24 Ga0209566_101293 3300025225 Bacteria 8261
25 Ga0209147_100014 3300025229 Bacteria 597841
26 Ga0209147_100042 3300025229 Bacteria 301263
27 Ga0209147_101267 3300025229 Bacteria 9882
28 Ga0209437_101050 3300025233 Bacteria 9181
29 Ga0209673_1004007 3300025273 Bacteria 8173
30 Ga0209130_1001336 3300025284 Bacteria 16685
31 Ga0209130_1006061 3300025284 Bacteria 4014
32 Ga0209675_1014101 3300025291 Bacteria 2455
33 Ga0209676_1000582 3300025292 Bacteria 54730
34 Ga0209025_1000001 3300025294 Bacteria 1888151
35 Ga0209025_1000353 3300025294 Bacteria 99365
36 Ga0209025_1001081 3300025294 Bacteria 39441
37 Ga0209025_1001116 3300025294 Bacteria 38478
38 Ga0209025_1001276 3300025294 Bacteria 34639
39 Ga0209025_1006431 3300025294 Bacteria 9117
40 Ga0209025_1012636 3300025294 Bacteria 5392
41 Ga0209025_1013326 3300025294 Bacteria 5178
42 Ga0209025_1016398 3300025294 Bacteria 4376
43 Ga0209025_1025012 3300025294 Bacteria 3056
44 Ga0209025_1034142 3300025294 Bacteria 2332
45 Ga0207696_1001915 3300025711 Bacteria 10593
46 Ga0207696_1004512 3300025711 Bacteria 5984
47 Ga0207655_1002018 3300025728 Bacteria 17180
48 Ga0207713_1016866 3300025735 Bacteria 3690
49 Ga0237817_10030 3300030083 Bacteria 49360
50 Ga0237819_00185 3300038705 Bacteria 22953
51 Ga0237819_00658 3300038705 Bacteria 11210
52 Ga0439439_0003311 3300041406 Bacteria 3545
53 Ga0439449_0000217 3300042007 Bacteria 20469
54 Ga0466967_0000093 3300045976 Bacteria 31946
55 Ga0495622_0015290 3300046557 Bacteria 3568
56 Ga0495661_0052665 3300046665 Bacteria 2451
57 Ga0495683_0017936 3300047323 Bacteria 3664
58 Ga0496102_0004896 3300048905 Bacteria 11340
59 Ga0496102_0014783 3300048905 Bacteria 6788
60 Ga0496103_0009289 3300048906 Bacteria 5825
61 Ga0496104_0000970 3300048907 Bacteria 24641
62 Ga0496105_0000171 3300048908 Bacteria 43079
63 Ga0496106_0014621 3300048909 Bacteria 5800
64 Ga0496107_0000088 3300048910 Bacteria 44139
65 Ga0496109_0000225 3300048912 Bacteria 55010
66 Ga0496110_0001417 3300048913 Bacteria 17330
67 Ga0496110_0023901 3300048913 Bacteria 5203
68 Ga0496111_0002341 3300048914 Bacteria 11419
69 Ga0496112_0000366 3300048915 Bacteria 29493
70 Ga0496116_0001703 3300048919 Bacteria 24097
71 Ga0496116_0013600 3300048919 Bacteria 6547
72 Ga0496116_0034611 3300048919 Bacteria 3561
73 Ga0496117_0010011 3300048920 Bacteria 8710
74 Ga0496121_0031758 3300048924 Bacteria 4817
75 Ga0496121_0087161 3300048924 Bacteria 2451
76 Ga0496122_0002060 3300048925 Bacteria 29835
77 Ga0496124_0141738 3300048927 Bacteria 1896
78 Ga0496125_0000260 3300048928 Bacteria 108939
79 Ga0496125_0007415 3300048928 Bacteria 11666
80 Ga0496125_0028008 3300048928 Bacteria 5096
81 Ga0496126_0003824 3300048929 Bacteria 18651
82 Ga0496126_0093643 3300048929 Bacteria 2637
83 Ga0501317_001595 3300049533 Bacteria 1987
84 2946053909 2946053406 Bacteria 6978655
85 2511178882 2510917027 Bacteria 5287437
86 2511699983 2511231119 Bacteria 4019861
87 2512640168 2512564013 Bacteria 6286191
88 2524190339 2524023129 Bacteria 6762600
89 2540607149 2540341094 Bacteria 4061186
90 2545556667 2545555800 Bacteria 4222588
91 2553391591 2551306519 Bacteria 5465154
92 2555467383 2554235283 Bacteria 3683090
93 2578930917 2576861599 Bacteria 4217202
94 2587738225 2585428059 Bacteria 8696589
95 2595087790 2593339131 Bacteria 5116855
96 2595318370 2593339198 Bacteria 7267884
97 2631983186 2630968484 Bacteria 3876276
98 2643738202 2643221543 Bacteria 6628015
99 2644421298 2643221676 Bacteria 8119172
100 2644704057 2643221729 Bacteria 6621700
101 2644708750 2643221730 Bacteria 6523787
102 2644719323 2643221731 Bacteria 5623886
103 2644722237 2643221732 Bacteria 5756404
104 2644740560 2643221735 Bacteria 3676263
105 2651532140 2648501850 Bacteria 3975476
106 2672336676 2671180330 Bacteria 5521719
107 2674419084 2671180844 Bacteria 4164150
108 2685149487 2684622632 Bacteria 5380049
109 2686997212 2684623153 Bacteria 3878815
110 2687498519 2687453109 Bacteria 3860091
111 2695627959 2695420354 Bacteria 3922431
112 2698323693 2695420987 Bacteria 6152737
113 2705993531 2703719227 Bacteria 5631989
114 2717916321 2716884898 Bacteria 3928789
115 2721504866 2718218445 Bacteria 5113413
116 2723603738 2721755693 Bacteria 6126117
117 2730139727 2728369359 Bacteria 5621728
118 2739156162 2738541358 Bacteria 5932299
119 2739210899 2738543006 Bacteria 5904091
120 2739230565 2738543010 Bacteria 5583595
121 2739270002 2738543017 Bacteria 4271950
122 2753807972 2751185905 Bacteria 6142767
123 2757565777 2757320391 Bacteria 4746095
124 2777761302 2775507177 Bacteria 4384303
125 2777839336 2775507192 Bacteria 4622234
126 2802435762 2802428803 Bacteria 5806948
127 2808869166 2808606364 Bacteria 4465927
128 2809056688 2808606399 Bacteria 4021018
129 2812316401 2811994870 Bacteria 3776934
130 2816862859 2816332186 Bacteria 5331395
131 2817480448 2816332295 Bacteria 4352468
132 2819569535 2818991441 Bacteria 5062707
133 2819579366 2818991443 Bacteria 6598732
134 2819673546 2818991459 Bacteria 8736032
135 2819708063 2818991465 Bacteria 5388835
136 2819723473 2818991468 Bacteria 3723169
137 2821114498 2821111986 Bacteria 6894338
138 2823528384 2823526263 Bacteria 3765752
139 2831905978 2831905167 Bacteria 3319172
140 2842684215 2842682962 Bacteria 5589973
141 2842885271 2842882022 Bacteria 6158489
142 2849144517 2849139964 Bacteria 5613304
143 2857456805 2857453340 Bacteria 8090534
144 2857467185 2857465823 Bacteria 6772595
145 2857476109 2857472729 Bacteria 6568124
146 2857582598 2857581216 Bacteria 5522813
147 2857587375 2857586860 Bacteria 4354574
148 2857591979 2857591370 Bacteria 6569758
149 2860839830 2860837431 Bacteria 4202080
150 2864737779 2864733723 Bacteria 6770668
151 2864998631 2864997549 Bacteria 5139696
152 2865007929 2865002811 Bacteria 6333767
153 2877770862 2877768649 Bacteria 3957164
154 2880171726 2880169592 Bacteria 3900066
155 2885527454 2885526491 Bacteria 7164189
156 2888582405 2888578766 Bacteria 6743310
157 2889046642 2889042446 Bacteria 7618936
158 2889055341 2889049205 Bacteria 7524325
159 2889279674 2889276214 Bacteria 5979355
160 2889298273 2889295896 Bacteria 4704906
161 2897111952 2897109615 Bacteria 4009619
162 2904115450 2904113452 Bacteria 7796941
163 2904163401 2904162308 Bacteria 7086713
164 2904493460 2904490793 Bacteria 7046938
165 2904527709 2904524088 Bacteria 5887454
166 2904563625 2904560550 Bacteria 4029838
167 2904596994 2904595352 Bacteria 6124848
168 2904757065 2904755435 Bacteria 7986759
169 2907206231 2907202186 Bacteria 6632024
170 2908668411 2908665501 Bacteria 3678115
171 2915601300 2915597211 Bacteria 6475886
172 2915607561 2915606848 Bacteria 6032732
173 2919096180 2919093281 Bacteria 3660974
174 2919143646 2919143609 Bacteria 6219228
175 2919165352 2919160200 Bacteria 6929020
176 2919431328 2919425241 Bacteria 8055701
177 2919520818 2919517244 Bacteria 5858162
178 2919724468 2919720352 Bacteria 5986006
179 2919728095 2919726948 Bacteria 3696050
180 2925326435 2925326138 Bacteria 9652120
181 2928097508 2928093941 Bacteria 5965005
182 2929004654 2929004312 Bacteria 5678476
183 2929186453 2929183550 Bacteria 6377511
184 2929209165 2929206907 Bacteria 5918291
185 2929234762 2929233124 Bacteria 5948380
186 2931390090 2931384279 Bacteria 7299545
187 2936341651 2936340661 Bacteria 5139038
188 2938918936 2938917290 Bacteria 5914775
189 2939679914 2939679117 Bacteria 6921672
190 2939703697 2939702853 Bacteria 5139229
191 2945997688 2945991243 Bacteria 7008369
192 2947428307 2947426588 Bacteria 5357194
193 2954774101 2954773129 Bacteria 3741715
194 2956898123 2956897341 Bacteria 5447711
195 2960323116 2960319331 Bacteria 5502575
196 2960381545 2960375949 Bacteria 5361395
197 2962293100 2962290636 Bacteria 4072939
198 2964378527 2964375228 Bacteria 4909004
199 2965762801 2965761152 Bacteria 5806513
200 2969139111 2969136845 Bacteria 3923176
201 2969143306 2969141011 Bacteria 4118468
202 2969767075 2969765954 Bacteria 4216713
203 2969773608 2969770375 Bacteria 4271280
204 2971411604 2971410472 Bacteria 8311090
205 2971895506 2971893375 Bacteria 3929648
206 2979085234 2979083700 Bacteria 5894929
207 2980128650 2980125574 Bacteria 5567337
208 2980183343 2980182181 Bacteria 9454109
209 2980494845 2980492589 Bacteria 4072961
210 2981286758 2981284811 Bacteria 4641497
211 2981291709 2981289755 Bacteria 4641509
212 2981982399 2981980479 Bacteria 4641628
213 2981987302 2981985349 Bacteria 4641497
214 2984529376 2984527788 Bacteria 5288478
215 2984535482 2984532647 Bacteria 5288506
216 3006830518 3006826541 Bacteria 4678913
217 3006860792 3006858327 Bacteria 4317835
218 3006881329 3006879489 Bacteria 4064221
219 3006973000 3006969106 Bacteria 4739423
220 3006981491 3006978542 Bacteria 5328100
221 3006984850 3006984091 Bacteria 4207523
222 648170029 648028048 Bacteria 5394884
223 8002323838 8002317523 Bacteria 8051857
224 8022622731 8022621104 Bacteria 5241040
225 8022633561 8022630665 Bacteria 3886130
226 8022657340 8022653035 Bacteria 4035078
227 8022798060 8022792930 Bacteria 5693794
228 8022893827 8022893055 Bacteria 5300455
229 8022915440 8022914991 Bacteria 5584517
230 8023442384 8023438354 Bacteria 5779374
231 8023448020 8023444577 Bacteria 5661597
232 8051955553 8051952484 Bacteria 3926774
233 8052176733 8052174270 Bacteria 3881265
234 8054281529 8054280661 Bacteria 4232245
235 8054796989 8054795415 Bacteria 9785225
236 8054803932 8054795415 Bacteria 9785225
237 8055634253 8055632911 Bacteria 5283357
238 8056539579 8056533031 Bacteria 8964429
239 8057584317 8057582654 Bacteria 5218944
240 8057635115 8057632132 Bacteria 4726859
241 8057978557 8057977335 Bacteria 5694872
242 JGI25159J45721_1003862
243 JGI25159J45721_1008961
244 JGI25151J46595_10000006
245 JGI25151J46595_10000029
246 JGI25151J46595_10000727
247 JGI25151J46595_10005249
248 JGI25151J46595_10029130
249 rootH1_10009612
250 rootL2_10101454
251 Ga0006562J51391_1000100
252 Ga0006562J51391_1003192
253 Ga0055532_1000064
254 Ga0055532_1000724
255 Ga0055528_1003089
256 Ga0055541_1004274
257 Ga0070671_100048101
258 Ga0105251_10017932
259 Ga0105251_10028505
260 Ga0105244_10014230
261 Ga0105250_10001923
262 Ga0105250_10002058
263 Ga0105246_10025860
264 Ga0209566_100322
265 Ga0209566_101293
266 Ga0209147_100014
267 Ga0209147_100042
268 Ga0209147_101267
269 Ga0209437_101050
270 Ga0209673_1004007
271 Ga0209130_1001336
272 Ga0209130_1006061
273 Ga0209675_1014101
274 Ga0209676_1000582
275 Ga0209025_1000001
276 Ga0209025_1000353
277 Ga0209025_1001081
278 Ga0209025_1001116
279 Ga0209025_1001276
280 Ga0209025_1006431
281 Ga0209025_1012636
282 Ga0209025_1013326
283 Ga0209025_1016398
284 Ga0209025_1025012
285 Ga0209025_1034142
286 Ga0207696_1001915
287 Ga0207696_1004512
288 Ga0207655_1002018
289 Ga0207713_1016866
290 Ga0237817_10030
291 Ga0237819_00185
292 Ga0237819_00658
293 Ga0439439_0003311
294 Ga0439449_0000217
295 Ga0466967_0000093
296 Ga0495622_0015290
297 Ga0495661_0052665
298 Ga0495683_0017936
299 Ga0496102_0004896
300 Ga0496102_0014783
301 Ga0496103_0009289
302 Ga0496104_0000970
303 Ga0496105_0000171
304 Ga0496106_0014621
305 Ga0496107_0000088
306 Ga0496109_0000225
307 Ga0496110_0001417
308 Ga0496110_0023901
309 Ga0496111_0002341
310 Ga0496112_0000366
311 Ga0496116_0001703
312 Ga0496116_0013600
313 Ga0496116_0034611
314 Ga0496117_0010011
315 Ga0496121_0031758
316 Ga0496121_0087161
317 Ga0496122_0002060
318 Ga0496124_0141738
319 Ga0496125_0000260
320 Ga0496125_0007415
321 Ga0496125_0028008
322 Ga0496126_0003824
323 Ga0496126_0093643
324 Ga0501317_001595
325 2946053909
326 2511178882
327 2511699983
328 2512640168
329 2524190339
330 2540607149
331 2545556667
332 2553391591
333 2555467383
334 2578930917
335 2587738225
336 2595087790
337 2595318370
338 2631983186
339 2643738202
340 2644421298
341 2644704057
342 2644708750
343 2644719323
344 2644722237
345 2644740560
346 2651532140
347 2672336676
348 2674419084
349 2685149487
350 2686997212
351 2687498519
352 2695627959
353 2698323693
354 2705993531
355 2717916321
356 2721504866
357 2723603738
358 2730139727
359 2739156162
360 2739210899
361 2739230565
362 2739270002
363 2753807972
364 2757565777
365 2777761302
366 2777839336
367 2802435762
368 2808869166
369 2809056688
370 2812316401
371 2816862859
372 2817480448
373 2819569535
374 2819579366
375 2819673546
376 2819708063
377 2819723473
378 2821114498
379 2823528384
380 2831905978
381 2842684215
382 2842885271
383 2849144517
384 2857456805
385 2857467185
386 2857476109
387 2857582598
388 2857587375
389 2857591979
390 2860839830
391 2864737779
392 2864998631
393 2865007929
394 2877770862
395 2880171726
396 2885527454
397 2888582405
398 2889046642
399 2889055341
400 2889279674
401 2889298273
402 2897111952
403 2904115450
404 2904163401
405 2904493460
406 2904527709
407 2904563625
408 2904596994
409 2904757065
410 2907206231
411 2908668411
412 2915601300
413 2915607561
414 2919096180
415 2919143646
416 2919165352
417 2919431328
418 2919520818
419 2919724468
420 2919728095
421 2925326435
422 2928097508
423 2929004654
424 2929186453
425 2929209165
426 2929234762
427 2931390090
428 2936341651
429 2938918936
430 2939679914
431 2939703697
432 2945997688
433 2947428307
434 2954774101
435 2956898123
436 2960323116
437 2960381545
438 2962293100
439 2964378527
440 2965762801
441 2969139111
442 2969143306
443 2969767075
444 2969773608
445 2971411604
446 2971895506
447 2979085234
448 2980128650
449 2980183343
450 2980494845
451 2981286758
452 2981291709
453 2981982399
454 2981987302
455 2984529376
456 2984535482
457 3006830518
458 3006860792
459 3006881329
460 3006973000
461 3006981491
462 3006984850
463 648170029
464 8002323838
465 8022622731
466 8022633561
467 8022657340
468 8022798060
469 8022893827
470 8022915440
471 8023442384
472 8023448020
473 8051955553
474 8052176733
475 8054281529
476 8054796989
477 8054803932
478 8055634253
479 8056539579
480 8057584317
481 8057635115
482 8057978557

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13307

Helicase_C_2

Helicase C-terminal domain

545

704

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
6fwr-assembly1.cif.gz_A structure of ding in complex with ssdna 0.7443 17 644
3eas-assembly1.cif.gz_B novel dimerization motif in the dead box rna helicase hera: form 1, complete dimer, asymmetric 0.7427 464 644
5nt7-assembly1.cif.gz_D structure of the lotus domain of oskar in complex with the c-terminal reca-like domain of vasa 0.7347 466 638
3gfp-assembly1.cif.gz_A structure of the c-terminal domain of the dead-box protein dbp5 0.7333 460 644
2p6n-assembly2.cif.gz_B human dead-box rna helicase ddx41, helicase domain 0.7326 464 638
ID Description Score Start End Superfamily
af_A0JPF7_83_159_1.10.287.660 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9167 333 387 1.10.287.660
af_P76257_437_627_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8864 473 643 3.40.50.300
5ws6Z00 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Photosystem II PsbZ, reaction centre 0.8857 332 386 1.10.287.740
af_Q2FYH5_686_888_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8756 464 644 3.40.50.300
af_Q6P3K6_303_378_1.10.287.660 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.873 334 387 1.10.287.660
ID Description Score Start End GO Terms
AF-A0A0B0IA01-F1-model_v4 deleted 0.9703 81 607
AF-A0A4R5KX87-F1-model_v4 ATP-dependent DNA helicase 0.9696 5 644 GO:0003676
GO:0003678
GO:0005524
GO:0006139
GO:0016818
AF-A0A4U3BT96-F1-model_v4 deleted 0.9625 473 645
AF-A0A0B0IA01-F1-model_v4 deleted 0.9614 81 607
AF-A0A4R5KX87-F1-model_v4 ATP-dependent DNA helicase 0.9608 5 644 GO:0003676
GO:0003678
GO:0005524
GO:0006139
GO:0016818

Map