F352421

General Info

Members Datasets Scaffolds Average Seq Length
239 221 72 499

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2935959822|2935960817
Length 532
Sequence ITDPNRAQLRRLAREERAMKNPSENQIGTTRRDAMKGGIGAASLAALGTSAAVPVAITTAAMTITTDTTTAQAEQAIAFGTLTQPATGIKMHPDYARTIAQMAYVWGWPIVNMMNRKAMFAQAPHPGHLNGVVPVAPTGQVGMLSDYVDPAETFVTCPNQDVVYGLGFFSLDEEPVVAQVPDFGDRFWVYALYDARTDQFGQLGKPYNSKPGFYLLVGPNWKGLKPDGITDVIRCPTSLANAIPRIFQDDTPEDKKAVQPVLNQVVFYPLKDFTGTMKTIEWSKAPNIPGPKSTGEETKWVVPDKFFEELGQALDTVDPLPGEEAMYQQFRLLLDVAAKDPELRKVLIATAIDTEEKIIHPFFQWKYNGRPAGNGWNRSTNNAQWGIDYYNRTGTARSNMFDNRPNETQYFYTDLDGAGGELTGNGKYEITFAKGEEPPVDGFWSLTLYNDKHLFYPNDLKRYSLGTKNKNLKRNADGSLTLYAGAKSPGGDKEANWLPAPGGNFSLYIRAYWGKEGILDGSWKPPVIKKVS

Samples

Sample ID Description Type Environment
1 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
2 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
3 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
4 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule
5 2513237143 Sinorhizobium meliloti Mlalz-1 Isolate Nodule
6 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
7 2516653046 Sinorhizobium meliloti BO21CC Isolate Nodule
8 2551306084 Sinorhizobium meliloti 5A14 Isolate Nodule
9 2551306085 Sinorhizobium meliloti AE608H Isolate Nodule
10 2551306086 Sinorhizobium meliloti AK11 Isolate Nodule
11 2643221557 Ensifer sp. Root558 Isolate Unclassified
12 2643221610 Ensifer sp. Root74 Isolate Unclassified
13 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
14 2643221668 Ensifer sp. Root423 Isolate Unclassified
15 2643221675 Ensifer sp. Root1298 Isolate Unclassified
16 2643221680 Ensifer sp. Root1312 Isolate Unclassified
17 2643221726 Ensifer sp. Root954 Isolate Unclassified
18 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
19 2738543013 Variovorax sp. BT01 Isolate Unclassified
20 2738543024 Aminobacter sp. AP02 Isolate Unclassified
21 2844425489 Enterobacter cloacae SBP-8 Isolate Rhizosphere
22 2855825444 Sinorhizobium meliloti CXM1-105 Isolate Nodule
23 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
24 2858800743 Sinorhizobium meliloti AK170 Isolate Unclassified
25 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
26 2915986958 Sinorhizobium meliloti USDA1659 Isolate Nodule
27 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
28 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
29 2916007675 Sinorhizobium meliloti USDA1289 Isolate Nodule
30 2916014648 Sinorhizobium meliloti USDA1583 Isolate Nodule
31 2916021584 Sinorhizobium meliloti USDA1550 Isolate Nodule
32 2916028427 Sinorhizobium meliloti USDA1613 Isolate Nodule
33 2916035215 Sinorhizobium meliloti 3011 Isolate Nodule
34 2916055098 Sinorhizobium meliloti USDA1770 Isolate Nodule
35 2916068649 Sinorhizobium meliloti USDA1220 Isolate Nodule
36 2919108558 Klebsiella sp. 1400 Isolate Rhizosphere
37 2921201388 Sinorhizobium meliloti USDA1692 Isolate Nodule
38 2921208531 Sinorhizobium meliloti USDA1660 Isolate Nodule
39 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
40 2921244191 Sinorhizobium meliloti 2119 Isolate Nodule
41 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
42 2921282425 Sinorhizobium meliloti USDA1203 Isolate Nodule
43 2921289301 Sinorhizobium meliloti USDA1730 Isolate Nodule
44 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
45 2924144063 Sinorhizobium meliloti USDA1022 Isolate Nodule
46 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
47 2924158325 Sinorhizobium meliloti USDA1146 Isolate Nodule
48 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
49 2924172951 Sinorhizobium meliloti USDA1626 Isolate Nodule
50 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
51 2924193448 Sinorhizobium meliloti USDA1158 Isolate Nodule
52 2924200457 Sinorhizobium meliloti USDA1007 Isolate Nodule
53 2924207177 Sinorhizobium meliloti USDA1589 Isolate Nodule
54 2924214083 Sinorhizobium meliloti USDA1702 Isolate Nodule
55 2924221636 Sinorhizobium meliloti USDA1416 Isolate Nodule
56 2924228884 Sinorhizobium meliloti USDA1581 Isolate Nodule
57 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
58 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
59 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
60 2932801729 Bradyrhizobium sp. S3.3.6 Isolate Nodule
61 2933577622 Bradyrhizobium japonicum SEMIA 417 Isolate Nodule
62 2935883170 Bradyrhizobium sp. S3.12.5 Isolate Nodule
63 2935959822 Bradyrhizobium sp. F1.4.3 Isolate Nodule
64 2937002841 Sinorhizobium meliloti USDA1006 Isolate Nodule
65 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
66 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
67 2937042894 Sinorhizobium meliloti USDA1687 Isolate Nodule
68 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
69 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
70 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
71 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
72 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
73 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
74 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
75 2937119839 Sinorhizobium meliloti USDA1790 Isolate Nodule
76 2937126314 Sinorhizobium meliloti USDA1612 Isolate Nodule
77 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
78 2957388812 Sinorhizobium meliloti USDA1195 Isolate Nodule
79 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
80 2957408893 Sinorhizobium meliloti USDA1163 Isolate Nodule
81 2957415311 Sinorhizobium meliloti USDA1724 Isolate Nodule
82 2957422303 Sinorhizobium meliloti USDA1497 Isolate Nodule
83 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
84 2957450854 Sinorhizobium meliloti USDA1655 Isolate Nodule
85 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
86 2957464669 Sinorhizobium meliloti USDA1520 Isolate Nodule
87 2957471148 Sinorhizobium meliloti USDA1204 Isolate Nodule
88 2957478035 Sinorhizobium meliloti USDA1171 Isolate Nodule
89 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
90 2957491536 Sinorhizobium meliloti USDA1804 Isolate Nodule
91 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
92 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
93 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
94 2960584000 Sinorhizobium meliloti USDA1530 Isolate Nodule
95 2960597568 Sinorhizobium meliloti 3085 Isolate Nodule
96 2960603979 Sinorhizobium meliloti USDA1580 Isolate Nodule
97 2960617483 Sinorhizobium meliloti USDA1719 Isolate Nodule
98 2960637947 Sinorhizobium meliloti USDA1202 Isolate Nodule
99 2960645483 Sinorhizobium meliloti USDA1703 Isolate Nodule
100 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
101 2960667422 Sinorhizobium meliloti USDA1170 Isolate Nodule
102 2960674078 Sinorhizobium meliloti USDA1666 Isolate Nodule
103 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
104 2964621998 Sinorhizobium meliloti USDA1235 Isolate Nodule
105 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
106 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
107 2964643177 Sinorhizobium meliloti USDA1760 Isolate Nodule
108 2964649959 Sinorhizobium meliloti USDA1591 Isolate Nodule
109 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
110 2964663802 Sinorhizobium meliloti USDA1688 Isolate Nodule
111 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
112 2964678106 Sinorhizobium meliloti USDA1210 Isolate Nodule
113 2964685014 Sinorhizobium meliloti USDA1232 Isolate Nodule
114 2964691889 Sinorhizobium meliloti USDA1379 Isolate Nodule
115 2964698721 Sinorhizobium meliloti USDA1656 Isolate Nodule
116 2964705432 Sinorhizobium meliloti USDA1614 Isolate Nodule
117 2964712639 Sinorhizobium meliloti USDA1616 Isolate Nodule
118 2964719344 Sinorhizobium meliloti USDA1456 Isolate Nodule
119 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
120 2967671571 Sinorhizobium meliloti USDA1496 Isolate Nodule
121 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
122 2967693043 Sinorhizobium meliloti USDA1183 Isolate Nodule
123 2967699805 Sinorhizobium meliloti USDA1695 Isolate Nodule
124 2967706974 Sinorhizobium meliloti USDA1206 Isolate Nodule
125 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
126 2967721400 Sinorhizobium meliloti USDA1742 Isolate Nodule
127 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
128 2967742019 Sinorhizobium meliloti USDA1676 Isolate Nodule
129 2967748971 Sinorhizobium meliloti USDA1024A Isolate Nodule
130 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
131 2967769361 Sinorhizobium meliloti USDA1005 Isolate Nodule
132 2967775926 Sinorhizobium meliloti USDA1678 Isolate Nodule
133 2970019648 Sinorhizobium meliloti USDA1603 Isolate Nodule
134 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
135 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
136 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
137 2970054988 Sinorhizobium meliloti USDA1031 Isolate Nodule
138 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
139 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
140 2970076120 Sinorhizobium meliloti USDA1706 Isolate Nodule
141 2970082768 Sinorhizobium meliloti USDA1803 Isolate Nodule
142 2970088815 Sinorhizobium meliloti USDA1819 Isolate Nodule
143 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
144 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
145 2970116247 Sinorhizobium meliloti USDA1566 Isolate Nodule
146 2970129317 Sinorhizobium meliloti USDA1008 Isolate Nodule
147 2970149975 Sinorhizobium meliloti USDA1215 Isolate Nodule
148 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
149 2970164137 Sinorhizobium meliloti USDA1018 Isolate Nodule
150 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
151 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
152 2970191845 Sinorhizobium meliloti USDA1187 Isolate Nodule
153 2977523885 Sinorhizobium meliloti USDA1777 Isolate Nodule
154 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
155 2977551784 Sinorhizobium meliloti USDA1035 Isolate Nodule
156 2977558990 Sinorhizobium meliloti USDA1222 Isolate Nodule
157 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
158 2977572785 Sinorhizobium meliloti USDA1767 Isolate Nodule
159 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
160 3005445848 Rhizobium sp. WYJ-E13 Isolate Unclassified
161 3007614139 Pseudomonas sp. PB106 Isolate Unclassified
162 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
163 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
164 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
165 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
166 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
167 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
168 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
169 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
170 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
171 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
172 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
173 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
174 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
175 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
176 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
177 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
178 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
179 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
180 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
181 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
182 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
183 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
184 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
185 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
186 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
187 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
188 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
189 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
190 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
191 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
192 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
193 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
194 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
195 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
196 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
197 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
198 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
199 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
200 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
201 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
202 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
203 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
204 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
205 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
206 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
207 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
208 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
209 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
210 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
211 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
212 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
213 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
214 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
215 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
216 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
217 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
218 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
219 648276728 Sinorhizobium meliloti BL225C Isolate Nodule
220 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
221 8055742211 Bradyrhizobium japonicum 5038 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 30.13
Metatranscriptomes 0
Isolates 69.87

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.11
Nodule 62.34
Rhizoplane 1.26
Rhizosphere 20.08
Stem 0
Stem Tuber 0
Unclassified 9.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1000336 3300002737 Bacteria 41116
2 JGI25151J46595_10030105 3300003187 Bacteria 2139
3 rootH2_10010776 3300003320 Bacteria 34245
4 rootH2_10019183 3300003320 Bacteria 3998
5 rootL2_10057953 3300003322 Bacteria 16191
6 rootH1_10146635 3300003323 Bacteria 6197
7 JGI25404J52841_10000534 3300003659 Bacteria 5595
8 Ga0055542_1000116 3300003762 Bacteria 106105
9 Ga0055524_1000676 3300003775 Bacteria 23909
10 Ga0065165_1000780 3300005262 Bacteria 42673
11 Ga0070683_100016473 3300005329 Bacteria 6519
12 Ga0070713_100029539 3300005436 Bacteria 4343
13 Ga0070697_100096202 3300005536 Bacteria 2456
14 Ga0070665_100006948 3300005548 Bacteria 11505
15 Ga0070665_100029418 3300005548 Bacteria 5529
16 Ga0068859_100138860 3300005617 Bacteria 2504
17 Ga0068859_100203404 3300005617 Bacteria 2065
18 Ga0081455_10050425 3300005937 Bacteria 3579
19 Ga0081455_10054182 3300005937 Bacteria 3420
20 Ga0081540_1000224 3300005983 Bacteria 59493
21 Ga0081540_1001375 3300005983 Bacteria 21094
22 Ga0081540_1001568 3300005983 Bacteria 19543
23 Ga0081540_1001945 3300005983 Bacteria 17281
24 Ga0081540_1005174 3300005983 Bacteria 9764
25 Ga0081540_1019686 3300005983 Bacteria 4089
26 Ga0081540_1025869 3300005983 Bacteria 3366
27 Ga0075366_10022181 3300006195 Bacteria 3693
28 Ga0097620_100138865 3300006931 Bacteria 2504
29 Ga0097620_100203413 3300006931 Bacteria 2065
30 Ga0079104_1011207 3300006946 Bacteria 2897
31 Ga0111539_10039833 3300009094 Bacteria 5660
32 Ga0207427_101490 3300025231 Bacteria 8341
33 Ga0209437_100271 3300025233 Bacteria 77542
34 Ga0209258_101780 3300025242 Bacteria 6613
35 Ga0209148_1000144 3300025254 Bacteria 161633
36 Ga0209130_1006350 3300025284 Bacteria 3857
37 Ga0209025_1000838 3300025294 Bacteria 48812
38 Ga0209564_1004996 3300025295 Bacteria 7796
39 Ga0209256_1000042 3300025299 Bacteria 341821
40 Ga0209256_1002008 3300025299 Bacteria 18176
41 Ga0207426_1001393 3300025302 Bacteria 20401
42 Ga0209281_1001843 3300027111 Bacteria 10327
43 Ga0268266_10007250 3300028379 Bacteria 10025
44 Ga0268266_10021255 3300028379 Bacteria 5528
45 Ga0395900_0009523 3300037418 Bacteria 9962
46 Ga0436365_1708019 3300039437 Bacteria 4781
47 Ga0466961_0066755 3300044693 Bacteria 2285
48 Ga0495606_0000249 3300046507 Bacteria 94749
49 Ga0495620_0005343 3300046515 Bacteria 7183
50 Ga0495632_0001422 3300046519 Bacteria 19929
51 Ga0495659_0001102 3300046664 Bacteria 9411
52 Ga0495649_0014033 3300046694 Bacteria 4605
53 Ga0496104_0077558 3300048907 Bacteria 3166
54 Ga0496105_0123950 3300048908 Bacteria 2130
55 Ga0496112_0032673 3300048915 Bacteria 5053
56 Ga0496116_0002483 3300048919 Bacteria 19328
57 Ga0496118_0012508 3300048921 Bacteria 8137
58 Ga0496126_0039171 3300048929 Bacteria 4401
59 Ga0501034_0139865 3300049571 Bacteria 2401
60 Ga0501036_0003936 3300049572 Bacteria 11931
61 Ga0501037_0177715 3300049573 Bacteria 1511
62 Ga0501039_0158727 3300049575 Bacteria 1777
63 Ga0501043_0002324 3300049579 Bacteria 16100
64 Ga0501043_0199499 3300049579 Bacteria 1553
65 Ga0501046_0012418 3300049580 Bacteria 7251
66 Ga0501047_0002936 3300049581 Bacteria 16183
67 Ga0501067_0003723 3300049583 Bacteria 8402
68 Ga0501080_0042715 3300049742 Bacteria 4220
69 Ga0501035_0012062 3300049822 Bacteria 7992
70 Ga0501044_0001632 3300049823 Bacteria 26302
71 Ga0501044_0014780 3300049823 Bacteria 8416
72 Ga0500595_018452 3300053119 Bacteria 2550

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003320 rootH2_10019183 rootH2_100191833 377
2 iso_pu_bacteria 2921201388 2921204825 406
3 3300005937 Ga0081455_10050425 Ga0081455_100504252 408
4 3300049579 Ga0501043_0199499 Ga0501043_0199499_23_1315 430
5 3300005548 Ga0070665_100029418 Ga0070665_1000294181 435
6 3300028379 Ga0268266_10021255 Ga0268266_100212551 435
7 3300044693 Ga0466961_0066755 Ga0466961_0066755_21_1364 442
8 3300053119 Ga0500595_018452 Ga0500595_018452_752_2080 442
9 3300003187 JGI25151J46595_10030105 JGI25151J46595_100301051 443
10 3300025284 Ga0209130_1006350 Ga0209130_10063502 443
11 3300003322 rootL2_10057953 rootL2_100579537 445
12 3300003320 rootH2_10010776 rootH2_1001077614 449
13 3300005617 Ga0068859_100203404 Ga0068859_1002034042 449
14 3300006931 Ga0097620_100203413 Ga0097620_1002034132 449
15 3300048908 Ga0496105_0123950 Ga0496105_0123950_364_1827 450
16 3300048915 Ga0496112_0032673 Ga0496112_0032673_1997_3460 450
17 3300048907 Ga0496104_0077558 Ga0496104_0077558_998_2458 452
18 3300005536 Ga0070697_100096202 Ga0070697_1000962021 455
19 3300005983 Ga0081540_1019686 Ga0081540_10196863 455
20 3300046664 Ga0495659_0001102 Ga0495659_0001102_254_1738 457
21 3300003323 rootH1_10146635 rootH1_101466354 458
22 3300025295 Ga0209564_1004996 Ga0209564_10049962 458
23 3300048929 Ga0496126_0039171 Ga0496126_0039171_1374_3032 460
24 3300005983 Ga0081540_1005174 Ga0081540_10051745 462
25 3300005617 Ga0068859_100138860 Ga0068859_1001388602 464
26 3300006931 Ga0097620_100138865 Ga0097620_1001388652 464
27 3300006946 Ga0079104_1011207 Ga0079104_10112071 464
28 3300027111 Ga0209281_1001843 Ga0209281_10018432 464
29 3300049823 Ga0501044_0014780 Ga0501044_0014780_2261_3850 465
30 3300049573 Ga0501037_0177715 Ga0501037_0177715_18_1433 466
31 iso_pu_bacteria 2551306086 2551696157 467
32 iso_pu_bacteria 2921296804 2921300893 469
33 3300005548 Ga0070665_100006948 Ga0070665_1000069486 470
34 3300028379 Ga0268266_10007250 Ga0268266_100072504 470
35 3300005983 Ga0081540_1001375 Ga0081540_10013755 471
36 3300046694 Ga0495649_0014033 Ga0495649_0014033_2892_4316 471
37 3300003659 JGI25404J52841_10000534 JGI25404J52841_100005343 474
38 3300003775 Ga0055524_1000676 Ga0055524_100067629 474
39 3300005937 Ga0081455_10054182 Ga0081455_100541824 474
40 3300005983 Ga0081540_1001568 Ga0081540_10015689 474
41 3300005983 Ga0081540_1001945 Ga0081540_10019452 474
42 3300005983 Ga0081540_1025869 Ga0081540_10258692 474
43 3300006195 Ga0075366_10022181 Ga0075366_100221813 474
44 3300009094 Ga0111539_10039833 Ga0111539_100398334 474
45 3300025299 Ga0209256_1000042 Ga0209256_1000042228 474
46 3300049571 Ga0501034_0139865 Ga0501034_0139865_152_1603 474
47 3300046515 Ga0495620_0005343 Ga0495620_0005343_3322_4788 475
48 3300046519 Ga0495632_0001422 Ga0495632_0001422_1030_2496 475
49 iso_pu_bacteria 3007614139 3007614689 475
50 3300046507 Ga0495606_0000249 Ga0495606_0000249_44160_45656 478
51 iso_pu_bacteria 2684623219 2687238767 480
52 3300049579 Ga0501043_0002324 Ga0501043_0002324_865_2373 481
53 iso_pu_bacteria 2891670763 2891671610 482
54 iso_pu_bacteria 2891670763 2891671739 482
55 iso_pu_bacteria 2891670763 2891674159 482
56 iso_pu_bacteria 2919108558 2919110857 482
57 3300005436 Ga0070713_100029539 Ga0070713_1000295392 483
58 3300025294 Ga0209025_1000838 Ga0209025_100083828 483
59 3300048919 Ga0496116_0002483 Ga0496116_0002483_2598_4064 483
60 3300048921 Ga0496118_0012508 Ga0496118_0012508_4654_6120 483
61 iso_pu_bacteria 2513237141 2513888468 483
62 iso_pu_bacteria 2738543024 2739309435 483
63 iso_pu_bacteria 2844425489 2844427398 483
64 3300039437 Ga0436365_1708019 Ga0436365_1708019_1375_2877 487
65 3300049572 Ga0501036_0003936 Ga0501036_0003936_10242_11780 487
66 3300049575 Ga0501039_0158727 Ga0501039_0158727_257_1747 487
67 3300049580 Ga0501046_0012418 Ga0501046_0012418_3454_4992 487
68 3300049581 Ga0501047_0002936 Ga0501047_0002936_11284_12822 487
69 3300049583 Ga0501067_0003723 Ga0501067_0003723_3383_4921 487
70 3300049822 Ga0501035_0012062 Ga0501035_0012062_3482_5020 487
71 3300049823 Ga0501044_0001632 Ga0501044_0001632_8699_10237 487
72 iso_pu_bacteria 2738543013 2739252103 487
73 iso_pu_bacteria 2929615660 2929618057 487
74 iso_pu_bacteria 2929624759 2929627738 487
75 iso_pu_bacteria 2933577622 2933579985 487
76 iso_pu_bacteria 8055742211 8055746354 487
77 3300005262 Ga0065165_1000780 Ga0065165_100078040 488
78 3300025302 Ga0207426_1001393 Ga0207426_10013938 488
79 3300049742 Ga0501080_0042715 Ga0501080_0042715_246_1745 488
80 iso_pu_bacteria 2511231052 2511501536 488
81 iso_pu_bacteria 2513237091 2513618729 488
82 iso_pu_bacteria 2513237140 2513884349 488
83 iso_pu_bacteria 2513237143 2513906216 488
84 iso_pu_bacteria 2513237165 2514042000 488
85 iso_pu_bacteria 2516653046 2516892854 488
86 iso_pu_bacteria 2551306084 2551674281 488
87 iso_pu_bacteria 2551306084 2551680433 488
88 iso_pu_bacteria 2551306085 2551689173 488
89 iso_pu_bacteria 2643221643 2644239935 488
90 iso_pu_bacteria 2855825444 2855825632 488
91 iso_pu_bacteria 2855839649 2855841005 488
92 iso_pu_bacteria 2858800743 2858801549 488
93 iso_pu_bacteria 2915986958 2915988741 488
94 iso_pu_bacteria 2915993759 2915996347 488
95 iso_pu_bacteria 2916000859 2916004657 488
96 iso_pu_bacteria 2916007675 2916010380 488
97 iso_pu_bacteria 2916014648 2916017118 488
98 iso_pu_bacteria 2916021584 2916027178 488
99 iso_pu_bacteria 2916028427 2916028991 488
100 iso_pu_bacteria 2916035215 2916038948 488
101 iso_pu_bacteria 2916055098 2916061605 488
102 iso_pu_bacteria 2916068649 2916074488 488
103 iso_pu_bacteria 2921208531 2921210241 488
104 iso_pu_bacteria 2921237296 2921239130 488
105 iso_pu_bacteria 2921244191 2921250436 488
106 iso_pu_bacteria 2921263974 2921264574 488
107 iso_pu_bacteria 2921282425 2921288548 488
108 iso_pu_bacteria 2921289301 2921293189 488
109 iso_pu_bacteria 2924144063 2924147402 488
110 iso_pu_bacteria 2924150972 2924156334 488
111 iso_pu_bacteria 2924158325 2924159079 488
112 iso_pu_bacteria 2924165586 2924167847 488
113 iso_pu_bacteria 2924172951 2924176501 488
114 iso_pu_bacteria 2924179722 2924183303 488
115 iso_pu_bacteria 2924193448 2924197522 488
116 iso_pu_bacteria 2924200457 2924203829 488
117 iso_pu_bacteria 2924207177 2924211145 488
118 iso_pu_bacteria 2924214083 2924217961 488
119 iso_pu_bacteria 2924221636 2924226973 488
120 iso_pu_bacteria 2924228884 2924232905 488
121 iso_pu_bacteria 2932794094 2932796245 488
122 iso_pu_bacteria 2932801729 2932804450 488
123 iso_pu_bacteria 2935883170 2935888861 488
124 iso_pu_bacteria 2935959822 2935960817 488
125 iso_pu_bacteria 2937002841 2937006179 488
126 iso_pu_bacteria 2937009748 2937012678 488
127 iso_pu_bacteria 2937016420 2937020552 488
128 iso_pu_bacteria 2937042894 2937045820 488
129 iso_pu_bacteria 2937049772 2937051238 488
130 iso_pu_bacteria 2937056579 2937060263 488
131 iso_pu_bacteria 2937071275 2937075154 488
132 iso_pu_bacteria 2937091812 2937095845 488
133 iso_pu_bacteria 2937098957 2937099396 488
134 iso_pu_bacteria 2937106411 2937111929 488
135 iso_pu_bacteria 2937113482 2937115738 488
136 iso_pu_bacteria 2937119839 2937124002 488
137 iso_pu_bacteria 2937126314 2937130097 488
138 iso_pu_bacteria 2957382221 2957384763 488
139 iso_pu_bacteria 2957388812 2957389857 488
140 iso_pu_bacteria 2957402308 2957404762 488
141 iso_pu_bacteria 2957408893 2957410241 488
142 iso_pu_bacteria 2957415311 2957419163 488
143 iso_pu_bacteria 2957422303 2957427785 488
144 iso_pu_bacteria 2957430029 2957434563 488
145 iso_pu_bacteria 2957450854 2957454243 488
146 iso_pu_bacteria 2957457609 2957459716 488
147 iso_pu_bacteria 2957464669 2957465709 488
148 iso_pu_bacteria 2957471148 2957474839 488
149 iso_pu_bacteria 2957478035 2957478639 488
150 iso_pu_bacteria 2957484790 2957491469 488
151 iso_pu_bacteria 2957491536 2957497168 488
152 iso_pu_bacteria 2957498199 2957502429 488
153 iso_pu_bacteria 2957505466 2957511374 488
154 iso_pu_bacteria 2958458903 2958461595 488
155 iso_pu_bacteria 2960584000 2960584824 488
156 iso_pu_bacteria 2960597568 2960602162 488
157 iso_pu_bacteria 2960603979 2960608110 488
158 iso_pu_bacteria 2960617483 2960621235 488
159 iso_pu_bacteria 2960637947 2960644578 488
160 iso_pu_bacteria 2960645483 2960646472 488
161 iso_pu_bacteria 2960652885 2960656257 488
162 iso_pu_bacteria 2960667422 2960669294 488
163 iso_pu_bacteria 2960674078 2960680570 488
164 iso_pu_bacteria 2964607997 2964609230 488
165 iso_pu_bacteria 2964621998 2964622623 488
166 iso_pu_bacteria 2964628898 2964629933 488
167 iso_pu_bacteria 2964636051 2964639665 488
168 iso_pu_bacteria 2964643177 2964646592 488
169 iso_pu_bacteria 2964649959 2964655857 488
170 iso_pu_bacteria 2964656573 2964662005 488
171 iso_pu_bacteria 2964663802 2964668014 488
172 iso_pu_bacteria 2964670856 2964677244 488
173 iso_pu_bacteria 2964678106 2964684011 488
174 iso_pu_bacteria 2964685014 2964688543 488
175 iso_pu_bacteria 2964691889 2964696925 488
176 iso_pu_bacteria 2964698721 2964700161 488
177 iso_pu_bacteria 2964705432 2964709360 488
178 iso_pu_bacteria 2964712639 2964717383 488
179 iso_pu_bacteria 2964719344 2964723700 488
180 iso_pu_bacteria 2967664464 2967667050 488
181 iso_pu_bacteria 2967671571 2967678705 488
182 iso_pu_bacteria 2967678726 2967683923 488
183 iso_pu_bacteria 2967693043 2967697784 488
184 iso_pu_bacteria 2967699805 2967701602 488
185 iso_pu_bacteria 2967706974 2967711736 488
186 iso_pu_bacteria 2967714385 2967715623 488
187 iso_pu_bacteria 2967721400 2967726767 488
188 iso_pu_bacteria 2967735183 2967741550 488
189 iso_pu_bacteria 2967742019 2967746280 488
190 iso_pu_bacteria 2967748971 2967750495 488
191 iso_pu_bacteria 2967762386 2967765122 488
192 iso_pu_bacteria 2967769361 2967770707 488
193 iso_pu_bacteria 2967775926 2967777123 488
194 iso_pu_bacteria 2970019648 2970022555 488
195 iso_pu_bacteria 2970033650 2970039571 488
196 iso_pu_bacteria 2970040964 2970041559 488
197 iso_pu_bacteria 2970047711 2970052706 488
198 iso_pu_bacteria 2970054988 2970059029 488
199 iso_pu_bacteria 2970061556 2970066919 488
200 iso_pu_bacteria 2970068827 2970073153 488
201 iso_pu_bacteria 2970076120 2970080959 488
202 iso_pu_bacteria 2970082768 2970083855 488
203 iso_pu_bacteria 2970088815 2970092665 488
204 iso_pu_bacteria 2970095765 2970100157 488
205 iso_pu_bacteria 2970109326 2970113629 488
206 iso_pu_bacteria 2970116247 2970118703 488
207 iso_pu_bacteria 2970129317 2970133975 488
208 iso_pu_bacteria 2970149975 2970154303 488
209 iso_pu_bacteria 2970156795 2970158555 488
210 iso_pu_bacteria 2970164137 2970170415 488
211 iso_pu_bacteria 2970170962 2970172084 488
212 iso_pu_bacteria 2970184632 2970187222 488
213 iso_pu_bacteria 2970191845 2970198535 488
214 iso_pu_bacteria 2977523885 2977527999 488
215 iso_pu_bacteria 2977537788 2977543489 488
216 iso_pu_bacteria 2977551784 2977554514 488
217 iso_pu_bacteria 2977558990 2977563473 488
218 iso_pu_bacteria 2977565890 2977570163 488
219 iso_pu_bacteria 2977572785 2977577412 488
220 iso_pu_bacteria 2977579622 2977583718 488
221 iso_pu_bacteria 3005445848 3005447939 488
222 iso_pu_bacteria 648276728 648740997 488
223 iso_pu_bacteria 8003992118 8003993500 488
224 3300005329 Ga0070683_100016473 Ga0070683_1000164734 489
225 3300005983 Ga0081540_1000224 Ga0081540_100022427 489
226 3300025299 Ga0209256_1002008 Ga0209256_10020088 489
227 3300037418 Ga0395900_0009523 Ga0395900_0009523_4754_6292 489
228 iso_pu_bacteria 2643221557 2643803398 489
229 iso_pu_bacteria 2643221610 2644063767 489
230 iso_pu_bacteria 2643221668 2644375042 489
231 iso_pu_bacteria 2643221675 2644414530 489
232 iso_pu_bacteria 2643221680 2644448058 489
233 iso_pu_bacteria 2643221726 2644690531 489
234 3300002737 JGI25162J39368_1000336 JGI25162J39368_10003367 493
235 3300003762 Ga0055542_1000116 Ga0055542_100011691 493
236 3300025231 Ga0207427_101490 Ga0207427_1014903 493
237 3300025233 Ga0209437_100271 Ga0209437_10027170 493
238 3300025242 Ga0209258_101780 Ga0209258_1017801 493
239 3300025254 Ga0209148_1000144 Ga0209148_1000144135 493

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06863

DUF1254

Protein of unknown function (DUF1254)

138

269

0.97

PF06742

DUF1214

Protein of unknown function (DUF1214)

407

516

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vb9-assembly2.cif.gz_D crystal structure of vpa0735 from vibrio parahaemolyticus in monoclinic form, northeast structural genomics target vpr109 0.7355 53 492
3vb9-assembly2.cif.gz_D crystal structure of vpa0735 from vibrio parahaemolyticus in monoclinic form, northeast structural genomics target vpr109 0.6974 53 492
3u07-assembly2.cif.gz_B crystal structure of the vpa0106 protein from vibrio parahaemolyticus. northeast structural genomics consortium target vpr106. 0.6856 56 493
3u07-assembly2.cif.gz_B crystal structure of the vpa0106 protein from vibrio parahaemolyticus. northeast structural genomics consortium target vpr106. 0.6826 56 493
3u07-assembly3.cif.gz_C crystal structure of the vpa0106 protein from vibrio parahaemolyticus. northeast structural genomics consortium target vpr106. 0.6738 56 493
ID Description Score Start End Superfamily
3vb9A04 Mainly Beta;Sandwich;Jelly Rolls;Domain of unknown function DUF1214, C-terminal domain 0.8951 369 492 2.60.120.600
3u07C02 Mainly Beta;Sandwich;Jelly Rolls; 0.853 371 493 2.60.120.1600
3u07C02 Mainly Beta;Sandwich;Jelly Rolls; 0.8396 371 493 2.60.120.1600
3vb9A04 Mainly Beta;Sandwich;Jelly Rolls;Domain of unknown function DUF1214, C-terminal domain 0.6323 369 492 2.60.120.600
af_I6XHH2_45_177_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.6266 364 492 3.40.47.10
ID Description Score Start End GO Terms
AF-A0A1R1JMR1-F1-model_v4 DUF1254 domain-containing protein 0.9923 51 493
AF-A0A2N8M4D9-F1-model_v4 Lipoprotein 0.9893 51 493
AF-A0A2T0L7T9-F1-model_v4 DUF1254 domain-containing protein 0.9881 45 493
AF-A0A1Q9W4H8-F1-model_v4 DUF1254 domain-containing protein 0.9867 51 492
AF-A0A1D8Y5M7-F1-model_v4 deleted 0.986 59 493

Feature Viewer

pLDDT pTM Quality
86.63 0.83 High
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Predicted Structure (AlphaFold2)

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