F344510

General Info

Members Datasets Scaffolds Average Seq Length
231 176 210 313

Family's Representative Sequence

Representative Sequence 3300050512|nmdc:mga0n895_276636_c1|nmdc:mga0n895_276636_c1_194_1267
Length 357
Sequence MESGWIGIGRAGKAKLFAHAGRWFIGDARLPADKRAQQGKTMRNRRTAVLGGSGFIGRYVVKRLAARGDVVPVGCRNAEEAKFLRPMGEVGQVEPINLAIDNAALLPAFLAGNDGLVNCVGILRASGSQTFERVHHTGPALLARLARDAGVERFVHISAIGADSRSSSAYARTKAAGEQAVRDAFPTVTILRPSVVFGPEDQFFNRFATIATISPVMPLIGGGETRFQPVYVGDVADAVIKCLEDPATAGRSYELGGPRIYTFRELLELMLGEIRRRRRFIDLPFGLAELQARLMAILPNPPLTPDQVELLKRDNVASPGALGLSSLGITPTPVEAILPTYLDRFRRGGWYERQPFQ

Samples

Sample ID Description Type Environment
1 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
2 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
3 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
4 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
5 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
6 2643221583 Caulobacter sp. Root655 Isolate Unclassified
7 2643221584 Caulobacter sp. Root656 Isolate Unclassified
8 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
9 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
10 2818991435 Caulobacter henricii 536 Isolate Unclassified
11 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
12 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
13 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
14 2909042592 Labrys sp. LIt4 Isolate Nodule
15 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
16 2958092219 Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 Isolate Nodule
17 2965047637 Mesorhizobium sp. M7A.F.Ca.US.014.04.1.1 Isolate Nodule
18 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
19 2979793036 Mesorhizobium sp. M7A.F.Ca.US.007.01.1.1 Isolate Nodule
20 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
21 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
22 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
23 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
24 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
25 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
26 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
27 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
28 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
31 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
32 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
33 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
34 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
35 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
36 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
37 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
38 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
39 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
40 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
41 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
42 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
43 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
44 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
45 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
46 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
47 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
48 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
49 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
58 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
59 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
64 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
79 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
80 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
81 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
82 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
83 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
84 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
87 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
88 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
89 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
90 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
91 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
92 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
93 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
94 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
95 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
96 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
97 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
98 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
99 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
100 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
101 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
102 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
103 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
104 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
105 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
106 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
107 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
108 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
109 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
110 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
111 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
112 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
113 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
114 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
115 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
116 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
117 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
118 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
119 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
120 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
121 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
122 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
123 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
124 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
125 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
126 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
127 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
128 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
129 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
130 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
131 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
132 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
133 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
134 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
135 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
136 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
137 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
138 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
139 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
140 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
150 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
151 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
152 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
153 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
154 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
155 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
156 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
157 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
159 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
160 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
161 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
162 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
163 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
164 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
165 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
166 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
167 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
168 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
169 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
170 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
171 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
172 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
173 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
174 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
175 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
176 3300059492 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.61
Metatranscriptomes 1.3
Isolates 9.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.85
Nodule 2.6
Rhizoplane 3.03
Rhizosphere 67.1
Stem 0
Stem Tuber 0
Unclassified 13.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10016812 3300003215 Bacteria 2912
2 Ga0006562J51391_1104442 3300003578 Bacteria 7860
3 Ga0006562J51391_1104444 3300003578 Bacteria 6280
4 Ga0055537_1001144 3300003773 Bacteria 11377
5 Ga0055524_1007975 3300003775 Bacteria 4445
6 Ga0055536_1000468 3300003781 Bacteria 28265
7 Ga0055528_1003794 3300003790 Bacteria 7446
8 Ga0055531_10001215 3300003794 Bacteria 19734
9 Ga0065165_1000293 3300005262 Bacteria 84715
10 Ga0068869_100110628 3300005334 Bacteria 2089
11 Ga0070668_100192301 3300005347 Bacteria 1672
12 Ga0070667_100297580 3300005367 Bacteria 1453
13 Ga0070709_10138301 3300005434 Bacteria 1670
14 Ga0070714_100120059 3300005435 Bacteria 2337
15 Ga0070713_100352153 3300005436 Bacteria 1366
16 Ga0070713_100381955 3300005436 Bacteria 1312
17 Ga0070710_10104330 3300005437 Bacteria 1693
18 Ga0070708_100013576 3300005445 Bacteria 6675
19 Ga0070681_10245437 3300005458 Bacteria 1704
20 Ga0070707_100011237 3300005468 Bacteria 8345
21 Ga0070698_100355115 3300005471 Bacteria 1397
22 Ga0070697_100070314 3300005536 Bacteria 2869
23 Ga0070697_100185613 3300005536 Bacteria 1763
24 Ga0070664_100233974 3300005564 Bacteria 1648
25 Ga0068856_100112193 3300005614 Bacteria 2724
26 Ga0068863_100501740 3300005841 Bacteria 1195
27 Ga0070717_10002083 3300006028 Bacteria 14010
28 Ga0070717_10126959 3300006028 Bacteria 2190
29 Ga0075365_10031318 3300006038 Bacteria 3411
30 Ga0070716_100106025 3300006173 Bacteria 1732
31 Ga0075369_10065576 3300006186 Bacteria 1592
32 Ga0075434_100460417 3300006871 Bacteria 1293
33 Ga0075436_100139653 3300006914 Bacteria 1702
34 Ga0075435_100071280 3300007076 Bacteria 2838
35 Ga0105240_10049900 3300009093 Bacteria 5279
36 Ga0105240_10083496 3300009093 Bacteria 3919
37 Ga0099796_10000393 3300010159 Bacteria 7179
38 Ga0099796_10003410 3300010159 Bacteria 3682
39 Ga0157371_10031557 3300013102 Bacteria 3817
40 Ga0157370_10003504 3300013104 Bacteria 18396
41 Ga0157370_10022455 3300013104 Bacteria 6277
42 Ga0157369_10013138 3300013105 Bacteria 9370
43 Ga0157372_10146835 3300013307 Bacteria 2720
44 Ga0157380_10013601 3300014326 Bacteria 5939
45 Ga0213872_10001310 3300021361 Bacteria 16534
46 Ga0213875_10000098 3300021388 Bacteria 98684
47 Ga0213875_10001231 3300021388 Bacteria 17276
48 Ga0213875_10001755 3300021388 Bacteria 13602
49 Ga0209565_1000090 3300025263 Bacteria 146540
50 Ga0209673_1001169 3300025273 Bacteria 28517
51 Ga0209676_1000038 3300025292 Bacteria 449305
52 Ga0209676_1003224 3300025292 Bacteria 10307
53 Ga0209564_1004820 3300025295 Bacteria 8033
54 Ga0209758_1003689 3300025297 Bacteria 13612
55 Ga0209758_1013527 3300025297 Bacteria 4439
56 Ga0209050_1016216 3300025298 Bacteria 3065
57 Ga0209256_1020073 3300025299 Bacteria 2100
58 Ga0209257_1000247 3300025304 Bacteria 125419
59 Ga0209257_1000525 3300025304 Bacteria 66561
60 Ga0207684_10112666 3300025910 Bacteria 2328
61 Ga0207707_10190348 3300025912 Bacteria 1790
62 Ga0207693_10001519 3300025915 Bacteria 20479
63 Ga0207693_10033972 3300025915 Bacteria 4024
64 Ga0207663_10035714 3300025916 Bacteria 2984
65 Ga0207646_10011460 3300025922 Bacteria 8589
66 Ga0207664_10173076 3300025929 Bacteria 1849
67 Ga0207644_10038914 3300025931 Bacteria 3354
68 Ga0207665_10072544 3300025939 Bacteria 2352
69 Ga0207667_10064186 3300025949 Bacteria 3835
70 Ga0207702_10069253 3300026078 Bacteria 3033
71 Ga0207641_10476891 3300026088 Bacteria 1209
72 Ga0307515_10041891 3300028794 Bacteria 7184
73 Ga0265325_10120411 3300031241 Bacteria 1266
74 Ga0265327_10001561 3300031251 Bacteria 28114
75 Ga0307408_100167841 3300031548 Bacteria 1750
76 Ga0307408_100191572 3300031548 Bacteria 1648
77 Ga0307410_10111716 3300031852 Bacteria 1978
78 Ga0307406_10001233 3300031901 Bacteria 14337
79 Ga0307412_10051271 3300031911 Bacteria 2726
80 Ga0307416_100170592 3300032002 Bacteria 2024
81 Ga0307416_100244575 3300032002 Bacteria 1741
82 Ga0373934_0044355 3300035086 Bacteria 1758
83 Ga0373935_0016680 3300035692 Bacteria 4445
84 Ga0373927_0283922 3300035695 Unclassified 1089
85 Ga0373937_0039974 3300036401 Bacteria 4275
86 Ga0373937_0046886 3300036401 Bacteria 3953
87 Ga0316584_0053895 3300036712 Bacteria 3009
88 Ga0395905_0088639 3300037471 Bacteria 2900
89 Ga0436364_0313258 3300037853 Bacteria 1449
90 Ga0436364_1149423 3300037853 Bacteria 148108
91 Ga0436364_1283917 3300037853 Bacteria 6352
92 Ga0436364_1300596 3300037853 Bacteria 1175
93 Ga0436364_1390920 3300037853 Bacteria 113944
94 Ga0436365_0963218 3300039437 Bacteria 3526
95 Ga0436365_1264085 3300039437 Bacteria 3408
96 Ga0436360_0691709 3300039438 Bacteria 6582
97 Ga0436360_1083961 3300039438 Bacteria 2181
98 Ga0436361_0460352 3300039447 Bacteria 65157
99 Ga0436361_0983471 3300039447 Bacteria 6202
100 Ga0436361_1018033 3300039447 Bacteria 1945
101 Ga0436363_0090379 3300039450 Bacteria 1323
102 Ga0436362_0257325 3300039453 Bacteria 1985
103 Ga0436362_0511093 3300039453 Bacteria 6884
104 Ga0436362_0596360 3300039453 Bacteria 2598
105 Ga0436362_0713619 3300039453 Bacteria 2451
106 Ga0439446_0010859 3300042156 Bacteria 2460
107 Ga0495617_038973 3300046452 Bacteria 1589
108 Ga0495627_000794 3300046453 Bacteria 23094
109 Ga0495638_0000292 3300046460 Bacteria 65766
110 Ga0495638_0003971 3300046460 Bacteria 11392
111 Ga0495638_0015478 3300046460 Bacteria 5119
112 Ga0495650_0000168 3300046471 Bacteria 145714
113 Ga0495607_0021971 3300046501 Bacteria 4012
114 Ga0495583_0000003 3300046506 Bacteria 709273
115 Ga0495606_0007465 3300046507 Bacteria 9773
116 Ga0495610_0003497 3300046512 Bacteria 12216
117 Ga0495610_0006613 3300046512 Bacteria 7921
118 Ga0495616_0000134 3300046513 Bacteria 63981
119 Ga0495620_0023425 3300046515 Bacteria 2952
120 Ga0495631_0040676 3300046518 Bacteria 2059
121 Ga0495632_0086029 3300046519 Bacteria 1495
122 Ga0495632_0096911 3300046519 Bacteria 1392
123 Ga0495637_0010014 3300046520 Bacteria 4605
124 Ga0495648_0135347 3300046524 Bacteria 1304
125 Ga0495654_0000016 3300046530 Bacteria 306416
126 Ga0495640_0139700 3300046533 Bacteria 1562
127 Ga0495586_0036326 3300046535 Bacteria 2645
128 Ga0495586_0059852 3300046535 Bacteria 2070
129 Ga0495633_0093749 3300046558 Bacteria 1395
130 Ga0495656_0085042 3300046615 Bacteria 1436
131 Ga0495668_0005617 3300046616 Bacteria 8430
132 Ga0495625_0000034 3300046660 Bacteria 225120
133 Ga0495625_0004384 3300046660 Bacteria 13387
134 Ga0495625_0024305 3300046660 Bacteria 4613
135 Ga0495625_0028504 3300046660 Bacteria 4187
136 Ga0495625_0161429 3300046660 Bacteria 1501
137 Ga0495599_0040000 3300046678 Bacteria 2945
138 Ga0495670_0136665 3300046691 Bacteria 1280
139 Ga0495671_0046105 3300046692 Bacteria 2180
140 Ga0495671_0078820 3300046692 Bacteria 1615
141 Ga0495660_0008392 3300046810 Bacteria 6043
142 Ga0495660_0049389 3300046810 Bacteria 2297
143 Ga0495672_0000303 3300047320 Bacteria 66366
144 Ga0495672_0091566 3300047320 Bacteria 1669
145 Ga0495679_016345 3300047446 Bacteria 2687
146 Ga0495673_0000053 3300047469 Bacteria 254433
147 Ga0495673_0001147 3300047469 Bacteria 22636
148 Ga0495686_0041563 3300047472 Bacteria 2926
149 Ga0495686_0058377 3300047472 Bacteria 2405
150 Ga0495686_0228926 3300047472 Bacteria 1053
151 Ga0496104_0293591 3300048907 Bacteria 1538
152 Ga0496106_0057864 3300048909 Bacteria 2932
153 Ga0496107_0000400 3300048910 Bacteria 23427
154 Ga0496111_0200846 3300048914 Bacteria 1482
155 Ga0496112_0025137 3300048915 Bacteria 5715
156 Ga0496115_0002527 3300048918 Bacteria 13147
157 Ga0496115_0383796 3300048918 Bacteria 1142
158 Ga0496118_0131330 3300048921 Bacteria 1608
159 Ga0496121_0014541 3300048924 Bacteria 8344
160 Ga0496122_0004488 3300048925 Bacteria 17259
161 Ga0496123_0001964 3300048926 Bacteria 26691
162 Ga0496124_0000083 3300048927 Bacteria 207798
163 Ga0496124_0093089 3300048927 Bacteria 2454
164 Ga0496126_0362206 3300048929 Bacteria 1184
165 Ga0501032_0000070 3300049569 Bacteria 86244
166 Ga0501033_0029121 3300049570 Bacteria 4150
167 Ga0501033_0106648 3300049570 Unclassified 2041
168 Ga0501034_0000001 3300049571 Bacteria 2184493
169 Ga0501034_0298975 3300049571 Bacteria 1546
170 Ga0501036_0036676 3300049572 Bacteria 4149
171 Ga0501036_0037817 3300049572 Bacteria 4082
172 Ga0501036_0102218 3300049572 Bacteria 2425
173 Ga0501037_0023533 3300049573 Bacteria 4555
174 Ga0501037_0259714 3300049573 Bacteria 1214
175 Ga0501038_0015419 3300049574 Bacteria 6947
176 Ga0501038_0175391 3300049574 Bacteria 1733
177 Ga0501039_0000001 3300049575 Bacteria 449008
178 Ga0501039_0067616 3300049575 Bacteria 2775
179 Ga0501042_0045313 3300049578 Bacteria 3135
180 Ga0501043_0082616 3300049579 Bacteria 2525
181 Ga0501072_0027194 3300049588 Bacteria 4464
182 Ga0501073_0003276 3300049589 Bacteria 12154
183 Ga0501075_0103019 3300049591 Bacteria 2168
184 Ga0501077_0049154 3300049593 Bacteria 2680
185 Ga0501238_000674 3300049671 Bacteria 3845
186 Ga0501080_0005110 3300049742 Bacteria 11689
187 Ga0501080_0155892 3300049742 Bacteria 2109
188 Ga0501081_0017409 3300049743 Bacteria 4756
189 Ga0501083_0206118 3300049744 Bacteria 1282
190 Ga0501035_0343386 3300049822 Bacteria 1250
191 Ga0501044_0024226 3300049823 Bacteria 6448
192 Ga0501044_0217142 3300049823 Bacteria 1864
193 nmdc:mga0k408_170764_c1 3300050493 Bacteria 1296
194 nmdc:mga0n895_276636_c1 3300050512 Bacteria 1702
195 nmdc:mga0sz30_103756_c1 3300050516 Bacteria 1243
196 Ga0495601_0011534 3300053077 Bacteria 5292
197 Ga0495595_0165609 3300053084 Bacteria 1092
198 Ga0495619_0022256 3300053085 Bacteria 4054
199 Ga0500644_0012199 3300053088 Bacteria 2370
200 Ga0500641_0010203 3300053096 Bacteria 3389
201 Ga0500556_0001775 3300053104 Bacteria 8053
202 Ga0500614_001588 3300053123 Bacteria 5367
203 Ga0500618_000117 3300053125 Bacteria 64829
204 Ga0500658_0002757 3300053134 Bacteria 6759
205 Ga0500559_0000009 3300053136 Bacteria 174153
206 Ga0500622_0014428 3300053156 Bacteria 4242
207 Ga0500627_0000440 3300053158 Bacteria 11268
208 Ga0500645_004275 3300053730 Bacteria 5526
209 Ga0501084_0287916 3300054114 Bacteria 1387
210 Ga0587073_0008476 3300059492 Bacteria 1665

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300032002 Ga0307416_100170592 Ga0307416_1001705922 266
2 3300046660 Ga0495625_0024305 Ga0495625_0024305_17_883 272
3 iso_pu_bacteria 2965047637 2965049187 279
4 3300003773 Ga0055537_1001144 Ga0055537_10011449 288
5 3300003775 Ga0055524_1007975 Ga0055524_10079752 288
6 3300003790 Ga0055528_1003794 Ga0055528_10037944 288
7 3300025263 Ga0209565_1000090 Ga0209565_100009073 288
8 3300025273 Ga0209673_1001169 Ga0209673_100116923 288
9 3300025299 Ga0209256_1020073 Ga0209256_10200732 288
10 3300046471 Ga0495650_0000168 Ga0495650_0000168_127975_128931 288
11 3300046660 Ga0495625_0028504 Ga0495625_0028504_2958_3914 288
12 3300042156 Ga0439446_0010859 Ga0439446_0010859_157_1125 289
13 3300048918 Ga0496115_0002527 Ga0496115_0002527_5042_5998 289
14 3300046453 Ga0495627_000794 Ga0495627_000794_6018_6986 290
15 3300046530 Ga0495654_0000016 Ga0495654_0000016_18865_19821 290
16 3300046691 Ga0495670_0136665 Ga0495670_0136665_37_909 290
17 3300047320 Ga0495672_0000303 Ga0495672_0000303_18767_19723 290
18 3300048909 Ga0496106_0057864 Ga0496106_0057864_1021_1977 290
19 3300048910 Ga0496107_0000400 Ga0496107_0000400_4018_4974 290
20 3300048924 Ga0496121_0014541 Ga0496121_0014541_6169_7125 290
21 3300048927 Ga0496124_0093089 Ga0496124_0093089_1117_2073 290
22 3300049671 Ga0501238_000674 Ga0501238_000674_2043_2999 290
23 3300053158 Ga0500627_0000440 Ga0500627_0000440_6802_7758 290
24 iso_pu_bacteria 2979793036 2979798188 290
25 3300025297 Ga0209758_1013527 Ga0209758_10135271 291
26 3300046520 Ga0495637_0010014 Ga0495637_0010014_273_1229 291
27 3300049570 Ga0501033_0029121 Ga0501033_0029121_421_1383 291
28 3300049571 Ga0501034_0298975 Ga0501034_0298975_405_1367 291
29 3300049572 Ga0501036_0036676 Ga0501036_0036676_2619_3581 291
30 3300049573 Ga0501037_0023533 Ga0501037_0023533_1230_2192 291
31 3300049574 Ga0501038_0015419 Ga0501038_0015419_5497_6459 291
32 3300049579 Ga0501043_0082616 Ga0501043_0082616_330_1292 291
33 3300049589 Ga0501073_0003276 Ga0501073_0003276_6546_7508 291
34 3300049742 Ga0501080_0005110 Ga0501080_0005110_2369_3331 291
35 3300049744 Ga0501083_0206118 Ga0501083_0206118_94_1056 291
36 3300049823 Ga0501044_0024226 Ga0501044_0024226_450_1412 291
37 3300053730 Ga0500645_004275 Ga0500645_004275_663_1619 291
38 3300009093 Ga0105240_10049900 Ga0105240_100499005 295
39 3300053134 Ga0500658_0002757 Ga0500658_0002757_4363_5319 297
40 iso_pu_bacteria 2775506901 2776266816 297
41 iso_pu_bacteria 2909042592 2909046756 297
42 3300046506 Ga0495583_0000003 Ga0495583_0000003_597088_598044 298
43 iso_pu_bacteria 2835312727 2835314814 298
44 3300003781 Ga0055536_1000468 Ga0055536_100046825 299
45 3300025292 Ga0209676_1000038 Ga0209676_100003834 299
46 3300025304 Ga0209257_1000525 Ga0209257_100052534 299
47 3300037471 Ga0395905_0088639 Ga0395905_0088639_643_1575 299
48 3300059492 Ga0587073_0008476 Ga0587073_0008476_79_1059 299
49 3300014326 Ga0157380_10013601 Ga0157380_100136015 300
50 3300031251 Ga0265327_10001561 Ga0265327_100015617 300
51 3300039450 Ga0436363_0090379 Ga0436363_0090379_238_1185 300
52 3300031548 Ga0307408_100167841 Ga0307408_1001678411 301
53 3300031548 Ga0307408_100191572 Ga0307408_1001915722 301
54 3300031852 Ga0307410_10111716 Ga0307410_101117162 301
55 3300032002 Ga0307416_100244575 Ga0307416_1002445752 301
56 3300046512 Ga0495610_0003497 Ga0495610_0003497_5810_6766 301
57 3300046524 Ga0495648_0135347 Ga0495648_0135347_308_1264 301
58 3300046692 Ga0495671_0046105 Ga0495671_0046105_448_1404 301
59 3300053096 Ga0500641_0010203 Ga0500641_0010203_588_1553 301
60 iso_pu_bacteria 2775506901 2776265446 301
61 iso_pu_bacteria 2835312727 2835316138 301
62 3300005262 Ga0065165_1000293 Ga0065165_100029320 302
63 3300025295 Ga0209564_1004820 Ga0209564_10048207 302
64 3300046519 Ga0495632_0086029 Ga0495632_0086029_69_1025 302
65 3300046616 Ga0495668_0005617 Ga0495668_0005617_4038_4994 302
66 3300050493 nmdc:mga0k408_170764_c1 nmdc:mga0k408_170764_c1_321_1277 302
67 3300025949 Ga0207667_10064186 Ga0207667_100641861 303
68 3300036401 Ga0373937_0039974 Ga0373937_0039974_1867_2814 303
69 3300046535 Ga0495586_0059852 Ga0495586_0059852_950_1897 303
70 3300046678 Ga0495599_0040000 Ga0495599_0040000_1639_2586 303
71 3300053077 Ga0495601_0011534 Ga0495601_0011534_1628_2575 303
72 3300053084 Ga0495595_0165609 Ga0495595_0165609_16_963 303
73 3300053085 Ga0495619_0022256 Ga0495619_0022256_2717_3664 303
74 3300005347 Ga0070668_100192301 Ga0070668_1001923012 304
75 3300046535 Ga0495586_0036326 Ga0495586_0036326_1275_2225 304
76 3300046615 Ga0495656_0085042 Ga0495656_0085042_413_1330 304
77 3300003794 Ga0055531_10001215 Ga0055531_100012155 305
78 3300025304 Ga0209257_1000247 Ga0209257_100024716 305
79 3300039437 Ga0436365_0963218 Ga0436365_0963218_798_1748 305
80 3300021361 Ga0213872_10001310 Ga0213872_100013105 307
81 3300039447 Ga0436361_0460352 Ga0436361_0460352_49182_50132 307
82 3300031241 Ga0265325_10120411 Ga0265325_101204111 309
83 3300039453 Ga0436362_0511093 Ga0436362_0511093_5711_6640 309
84 3300036712 Ga0316584_0053895 Ga0316584_0053895_578_1552 311
85 3300005436 Ga0070713_100381955 Ga0070713_1003819552 314
86 3300005536 Ga0070697_100070314 Ga0070697_1000703143 314
87 3300006028 Ga0070717_10002083 Ga0070717_1000208315 314
88 3300006038 Ga0075365_10031318 Ga0075365_100313183 314
89 3300006186 Ga0075369_10065576 Ga0075369_100655762 314
90 3300046533 Ga0495640_0139700 Ga0495640_0139700_545_1492 314
91 3300047320 Ga0495672_0091566 Ga0495672_0091566_361_1329 314
92 3300048921 Ga0496118_0131330 Ga0496118_0131330_365_1354 314
93 3300049569 Ga0501032_0000070 Ga0501032_0000070_44287_45240 314
94 3300049570 Ga0501033_0106648 Ga0501033_0106648_1075_2028 314
95 3300049571 Ga0501034_0000001 Ga0501034_0000001_484620_485573 314
96 3300049572 Ga0501036_0037817 Ga0501036_0037817_125_1078 314
97 3300049575 Ga0501039_0000001 Ga0501039_0000001_347767_348720 314
98 3300050516 nmdc:mga0sz30_103756_c1 nmdc:mga0sz30_103756_c1_69_1058 314
99 iso_pu_bacteria 2510917020 2511120316 314
100 iso_pu_bacteria 2582581280 2585151096 314
101 iso_pu_bacteria 2582581293 2585196244 314
102 iso_pu_bacteria 2643221545 2643750191 314
103 iso_pu_bacteria 2643221552 2643779983 314
104 iso_pu_bacteria 2643221583 2643922413 314
105 iso_pu_bacteria 2643221584 2643932037 314
106 iso_pu_bacteria 2643221691 2644507080 314
107 iso_pu_bacteria 2818991435 2819538186 314
108 iso_pu_bacteria 2818991454 2819647244 314
109 iso_pu_bacteria 2928972540 2928973469 314
110 iso_pu_bacteria 2977240413 2977240552 314
111 3300005435 Ga0070714_100120059 Ga0070714_1001200593 315
112 3300005436 Ga0070713_100352153 Ga0070713_1003521531 315
113 3300005437 Ga0070710_10104330 Ga0070710_101043302 315
114 3300005445 Ga0070708_100013576 Ga0070708_1000135763 315
115 3300005468 Ga0070707_100011237 Ga0070707_1000112372 315
116 3300005471 Ga0070698_100355115 Ga0070698_1003551152 315
117 3300005536 Ga0070697_100185613 Ga0070697_1001856132 315
118 3300009093 Ga0105240_10083496 Ga0105240_100834964 315
119 3300010159 Ga0099796_10003410 Ga0099796_100034103 315
120 3300013104 Ga0157370_10003504 Ga0157370_100035041 315
121 3300013307 Ga0157372_10146835 Ga0157372_101468352 315
122 3300021388 Ga0213875_10000098 Ga0213875_1000009867 315
123 3300021388 Ga0213875_10001231 Ga0213875_1000123114 315
124 3300021388 Ga0213875_10001755 Ga0213875_100017555 315
125 3300025292 Ga0209676_1003224 Ga0209676_10032243 315
126 3300025910 Ga0207684_10112666 Ga0207684_101126663 315
127 3300025915 Ga0207693_10001519 Ga0207693_1000151915 315
128 3300025922 Ga0207646_10011460 Ga0207646_100114601 315
129 3300031901 Ga0307406_10001233 Ga0307406_1000123315 315
130 3300031911 Ga0307412_10051271 Ga0307412_100512711 315
131 3300035086 Ga0373934_0044355 Ga0373934_0044355_176_1126 315
132 3300036401 Ga0373937_0046886 Ga0373937_0046886_521_1471 315
133 3300037853 Ga0436364_0313258 Ga0436364_0313258_32_982 315
134 3300037853 Ga0436364_1149423 Ga0436364_1149423_66837_67799 315
135 3300037853 Ga0436364_1283917 Ga0436364_1283917_767_1717 315
136 3300037853 Ga0436364_1300596 Ga0436364_1300596_139_1086 315
137 3300037853 Ga0436364_1390920 Ga0436364_1390920_68675_69637 315
138 3300039438 Ga0436360_0691709 Ga0436360_0691709_1064_2014 315
139 3300039438 Ga0436360_1083961 Ga0436360_1083961_1041_1997 315
140 3300039447 Ga0436361_0983471 Ga0436361_0983471_4062_5012 315
141 3300039447 Ga0436361_1018033 Ga0436361_1018033_820_1770 315
142 3300039453 Ga0436362_0257325 Ga0436362_0257325_336_1286 315
143 3300039453 Ga0436362_0713619 Ga0436362_0713619_1241_2191 315
144 3300049572 Ga0501036_0102218 Ga0501036_0102218_83_1063 315
145 3300049573 Ga0501037_0259714 Ga0501037_0259714_169_1149 315
146 3300049575 Ga0501039_0067616 Ga0501039_0067616_1763_2743 315
147 3300049578 Ga0501042_0045313 Ga0501042_0045313_956_1936 315
148 3300049588 Ga0501072_0027194 Ga0501072_0027194_3454_4434 315
149 3300049591 Ga0501075_0103019 Ga0501075_0103019_1092_2072 315
150 3300049593 Ga0501077_0049154 Ga0501077_0049154_634_1614 315
151 3300049742 Ga0501080_0155892 Ga0501080_0155892_299_1279 315
152 3300049743 Ga0501081_0017409 Ga0501081_0017409_2943_3923 315
153 3300049823 Ga0501044_0217142 Ga0501044_0217142_509_1465 315
154 3300050512 nmdc:mga0n895_276636_c1 nmdc:mga0n895_276636_c1_194_1267 315
155 3300053088 Ga0500644_0012199 Ga0500644_0012199_947_1918 315
156 3300054114 Ga0501084_0287916 Ga0501084_0287916_16_996 315
157 iso_pu_bacteria 2894817345 2894822223 315
158 iso_pu_bacteria 2958092219 2958097988 315
159 3300003578 Ga0006562J51391_1104442 Ga0006562J51391_11044424 316
160 3300003578 Ga0006562J51391_1104444 Ga0006562J51391_11044444 316
161 3300005458 Ga0070681_10245437 Ga0070681_102454372 316
162 3300013102 Ga0157371_10031557 Ga0157371_100315574 316
163 3300013104 Ga0157370_10022455 Ga0157370_100224555 316
164 3300013105 Ga0157369_10013138 Ga0157369_100131382 316
165 3300025912 Ga0207707_10190348 Ga0207707_101903482 316
166 3300046558 Ga0495633_0093749 Ga0495633_0093749_149_1126 316
167 3300048918 Ga0496115_0383796 Ga0496115_0383796_61_1092 316
168 3300048925 Ga0496122_0004488 Ga0496122_0004488_1433_2410 316
169 3300048926 Ga0496123_0001964 Ga0496123_0001964_24921_25898 316
170 3300048927 Ga0496124_0000083 Ga0496124_0000083_56935_57915 316
171 3300049822 Ga0501035_0343386 Ga0501035_0343386_39_1028 316
172 3300005367 Ga0070667_100297580 Ga0070667_1002975802 317
173 3300005434 Ga0070709_10138301 Ga0070709_101383011 317
174 3300005564 Ga0070664_100233974 Ga0070664_1002339742 317
175 3300005614 Ga0068856_100112193 Ga0068856_1001121932 317
176 3300005841 Ga0068863_100501740 Ga0068863_1005017402 317
177 3300006028 Ga0070717_10126959 Ga0070717_101269592 317
178 3300006173 Ga0070716_100106025 Ga0070716_1001060251 317
179 3300006871 Ga0075434_100460417 Ga0075434_1004604171 317
180 3300006914 Ga0075436_100139653 Ga0075436_1001396532 317
181 3300007076 Ga0075435_100071280 Ga0075435_1000712803 317
182 3300010159 Ga0099796_10000393 Ga0099796_100003936 317
183 3300025915 Ga0207693_10033972 Ga0207693_100339723 317
184 3300025916 Ga0207663_10035714 Ga0207663_100357142 317
185 3300025929 Ga0207664_10173076 Ga0207664_101730762 317
186 3300025931 Ga0207644_10038914 Ga0207644_100389143 317
187 3300025939 Ga0207665_10072544 Ga0207665_100725442 317
188 3300026078 Ga0207702_10069253 Ga0207702_100692533 317
189 3300026088 Ga0207641_10476891 Ga0207641_104768911 317
190 3300035692 Ga0373935_0016680 Ga0373935_0016680_1246_2208 317
191 3300035695 Ga0373927_0283922 Ga0373927_0283922_79_1044 317
192 3300039437 Ga0436365_1264085 Ga0436365_1264085_1978_2940 317
193 3300039453 Ga0436362_0596360 Ga0436362_0596360_241_1203 317
194 3300048907 Ga0496104_0293591 Ga0496104_0293591_200_1162 317
195 3300048914 Ga0496111_0200846 Ga0496111_0200846_446_1408 317
196 3300048915 Ga0496112_0025137 Ga0496112_0025137_1606_2568 317
197 3300003215 JGI25153J46596_10016812 JGI25153J46596_100168121 318
198 3300005334 Ga0068869_100110628 Ga0068869_1001106282 318
199 3300025297 Ga0209758_1003689 Ga0209758_10036896 318
200 3300025298 Ga0209050_1016216 Ga0209050_10162162 318
201 3300028794 Ga0307515_10041891 Ga0307515_100418916 318
202 3300046452 Ga0495617_038973 Ga0495617_038973_196_1152 318
203 3300046460 Ga0495638_0000292 Ga0495638_0000292_60972_61928 318
204 3300046460 Ga0495638_0003971 Ga0495638_0003971_5799_6755 318
205 3300046460 Ga0495638_0015478 Ga0495638_0015478_2326_3294 318
206 3300046501 Ga0495607_0021971 Ga0495607_0021971_2843_3799 318
207 3300046507 Ga0495606_0007465 Ga0495606_0007465_4556_5512 318
208 3300046512 Ga0495610_0006613 Ga0495610_0006613_6773_7741 318
209 3300046513 Ga0495616_0000134 Ga0495616_0000134_4907_5863 318
210 3300046515 Ga0495620_0023425 Ga0495620_0023425_1808_2764 318
211 3300046518 Ga0495631_0040676 Ga0495631_0040676_1018_1974 318
212 3300046519 Ga0495632_0096911 Ga0495632_0096911_368_1324 318
213 3300046660 Ga0495625_0000034 Ga0495625_0000034_124488_125444 318
214 3300046660 Ga0495625_0004384 Ga0495625_0004384_8674_9630 318
215 3300046660 Ga0495625_0161429 Ga0495625_0161429_453_1421 318
216 3300046692 Ga0495671_0078820 Ga0495671_0078820_538_1506 318
217 3300046810 Ga0495660_0008392 Ga0495660_0008392_5067_6023 318
218 3300046810 Ga0495660_0049389 Ga0495660_0049389_602_1570 318
219 3300047446 Ga0495679_016345 Ga0495679_016345_383_1339 318
220 3300047469 Ga0495673_0000053 Ga0495673_0000053_26891_27859 318
221 3300047469 Ga0495673_0001147 Ga0495673_0001147_14616_15572 318
222 3300047472 Ga0495686_0041563 Ga0495686_0041563_1401_2357 318
223 3300047472 Ga0495686_0058377 Ga0495686_0058377_1416_2384 318
224 3300047472 Ga0495686_0228926 Ga0495686_0228926_10_978 318
225 3300048929 Ga0496126_0362206 Ga0496126_0362206_78_1034 318
226 3300049574 Ga0501038_0175391 Ga0501038_0175391_149_1198 318
227 3300053104 Ga0500556_0001775 Ga0500556_0001775_171_1127 318
228 3300053123 Ga0500614_001588 Ga0500614_001588_3710_4666 318
229 3300053125 Ga0500618_000117 Ga0500618_000117_46488_47444 318
230 3300053136 Ga0500559_0000009 Ga0500559_0000009_20813_21769 318
231 3300053156 Ga0500622_0014428 Ga0500622_0014428_2108_3064 318

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

48

253

0.87

PF04321

RmlD_sub_bind

RmlD substrate binding domain

162

276

0.86

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

47

256

0.83

PF05368

NmrA

NmrA-like family

47

281

0.83

PF13460

NAD_binding_10

NAD(P)H-binding

51

246

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
8e73-assembly1.cif.gz_A9 vigna radiata supercomplex i+iii2 (full bridge) 0.9655 3 306
6rfq-assembly1.cif.gz_E cryo-em structure of a respiratory complex i assembly intermediate with ndufaf2 0.9631 4 229
7w35-assembly1.cif.gz_J deactive state ci from dq-nadh dataset, subclass 3 0.9549 3 305
6x89-assembly1.cif.gz_A9 vigna radiata mitochondrial complex i* 0.9542 4 304
6zr2-assembly1.cif.gz_P cryo-em structure of respiratory complex i in the active state from mus musculus at 3.1 a 0.9537 4 307
ID Description Score Start End Superfamily
af_Q9SK66_71_329_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9769 6 255 3.40.50.720
af_A0A2R8RUA9_55_239_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9571 3 168 3.40.50.720
af_Q559Z0_43_331_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.955 7 293 3.40.50.720
af_Q9DC69_47_264_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9544 3 210 3.40.50.720
af_Q4DU32_30_254_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9488 4 214 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A258IZD6-F1-model_v4 deleted 0.9898 3 252
AF-A0A259JQ76-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9898 3 203 GO:0044877
GO:1901006
AF-A0A2N3CM24-F1-model_v4 Complex I NDUFA9 subunit family protein 0.9876 1 146 GO:0044877
GO:1901006
AF-A0A2D7XIS0-F1-model_v4 Complex I NDUFA9 subunit family protein 0.9849 96 306 GO:0044877
GO:1901006
AF-A0A0D6MLJ9-F1-model_v4 3-beta-hydroxy-delta(5)-steroid dehydrogenase 0.9835 2 301 GO:0044877
GO:1901006

Feature Viewer

pLDDT pTM Quality
91.96 0.9 High
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Predicted Structure (AlphaFold2)

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