F335924

General Info

Members Datasets Scaffolds Average Seq Length
223 163 208 326

Family's Representative Sequence

Representative Sequence 3300046507|Ga0495606_0001085|Ga0495606_0001085_12786_13934
Length 382
Sequence MEAAMRPHILVVGGAGYIGSHMVKRLQRAGYAPVVLDNLSQGQRQAVHAGQLIVGELDDPAVLDVIFQAWPIQAVMHFASHIQVGESVRQPERYYANNVGNTIGLLAAMVRHGVKRCIFSSTAAIFGNPHYTPIDEQHPKAPINPYGRSKLMVEDILADMEASCGMRSCCLRYFNAAGADPEGSLGECHEPETHLIPLVLRVASGRRDAITVYGTDYDTPDGTCIRDYIHVQDLCDAHLLALQALAAGSPSARYNLGNGDGYSIREVIAAARRVTGRPITELSGPRREGDPARLVADSTLARKQLGWEPQFAALDTIIEHAWHWEQTQAGVDFGSGLRLPRAPLRAVPGSRTPGLISERRFQQDRRHPDTFDPTGGPDAVSA

Samples

Sample ID Description Type Environment
1 2593339239 Luteibacter sp. UNCMF331Sha3.1 Isolate Unclassified
2 2734482264 Dyella sp. AD052 Isolate Unclassified
3 2738543009 Luteibacter sp. OK325 Isolate Unclassified
4 2818991440 Luteibacter yeojuensis 583 Isolate Unclassified
5 2821131069 Duganella sp. 1224 Isolate Unclassified
6 2842914999 Luteibacter sp. R-72151 Isolate Unclassified
7 2842918807 Luteibacter sp. R-73110 Isolate Unclassified
8 2857558681 Duganella sp. R-74565 Isolate Unclassified
9 2857564685 Duganella sp. R-74599 Isolate Unclassified
10 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
11 2904463128 Luteibacter yeojuensis 3191 Isolate Unclassified
12 2919085039 Luteibacter sp. 1214 Isolate Unclassified
13 2919404418 Luteibacter sp. 3190 Isolate Unclassified
14 2941471342 Luteibacter sp. 621 Isolate Unclassified
15 2953994433 Luteibacter sp. W1I16 Isolate Rhizosphere
16 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
17 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
18 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
19 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
20 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
21 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
22 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
23 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
24 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
25 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
26 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
27 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
28 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
29 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
30 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
35 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
36 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
37 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
49 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
50 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
51 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
71 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
72 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
73 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
74 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
75 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
76 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
79 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
80 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
81 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
82 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
83 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
86 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
87 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
88 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
89 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
90 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
91 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
92 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
93 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
94 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
95 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
96 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
97 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
98 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
99 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
100 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
101 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
102 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
103 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
104 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
105 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
106 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
107 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
108 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
109 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
110 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
111 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
112 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
113 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
114 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
115 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
116 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
117 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
118 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
119 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
120 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
121 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
122 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
123 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
124 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
125 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
126 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
127 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
128 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
129 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
130 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
131 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
132 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
133 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
134 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
135 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
136 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
137 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
138 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
139 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
140 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
141 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
142 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
143 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
144 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
145 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
146 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
147 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
148 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
149 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
150 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
151 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
152 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
153 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
154 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
155 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
156 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
157 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
158 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
159 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
160 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
161 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
162 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
163 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.38
Metatranscriptomes 0.9
Isolates 6.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.28
Nodule 0
Rhizoplane 2.69
Rhizosphere 76.23
Stem 0
Stem Tuber 0
Unclassified 14.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1000587 3300001904 Bacteria 6683
2 JGI24738J21930_10005524 3300002075 Bacteria 3022
3 Ga0006562J51391_1191754 3300003578 Bacteria 1700
4 Ga0006562J51391_1191755 3300003578 Bacteria 1420
5 Ga0055526_1000029 3300003771 Bacteria 148855
6 Ga0065165_1000500 3300005262 Bacteria 60723
7 Ga0070658_10001301 3300005327 Bacteria 21329
8 Ga0070666_10000008 3300005335 Bacteria 293415
9 Ga0070661_100008250 3300005344 Bacteria 7189
10 Ga0070675_100080692 3300005354 Bacteria 2712
11 Ga0070667_100114718 3300005367 Bacteria 2339
12 Ga0070709_10067889 3300005434 Bacteria 2291
13 Ga0070714_100084966 3300005435 Bacteria 2763
14 Ga0070694_100099805 3300005444 Bacteria 2052
15 Ga0070672_100071285 3300005543 Bacteria 2764
16 Ga0070672_100202229 3300005543 Bacteria 1661
17 Ga0070695_100024472 3300005545 Bacteria 3720
18 Ga0070665_100000204 3300005548 Bacteria 103980
19 Ga0070665_100207103 3300005548 Bacteria 1962
20 Ga0070665_100316256 3300005548 Bacteria 1565
21 Ga0068863_100086231 3300005841 Bacteria 2975
22 Ga0068860_100122204 3300005843 Bacteria 2494
23 Ga0068860_100172409 3300005843 Bacteria 2090
24 Ga0081540_1105376 3300005983 Bacteria 1204
25 Ga0075369_10057313 3300006186 Bacteria 1694
26 Ga0075366_10007499 3300006195 Bacteria 6029
27 Ga0075436_100143168 3300006914 Bacteria 1681
28 Ga0111539_10029417 3300009094 Bacteria 6690
29 Ga0111539_10033287 3300009094 Bacteria 6258
30 Ga0105245_10038386 3300009098 Bacteria 4261
31 Ga0105247_10001253 3300009101 Bacteria 18813
32 Ga0114129_10411371 3300009147 Bacteria 1781
33 Ga0105241_10208409 3300009174 Bacteria 1637
34 Ga0105238_10014336 3300009551 Bacteria 8012
35 Ga0157370_10000291 3300013104 Bacteria 63434
36 Ga0157370_10011706 3300013104 Bacteria 9156
37 Ga0157369_10003006 3300013105 Bacteria 20165
38 Ga0163162_10001185 3300013306 Bacteria 24324
39 Ga0157375_10407792 3300013308 Bacteria 1525
40 Ga0182008_10002328 3300014497 Bacteria 11969
41 Ga0182008_10026150 3300014497 Bacteria 2960
42 Ga0182008_10063983 3300014497 Bacteria 1811
43 Ga0182006_1000057 3300015261 Bacteria 168707
44 Ga0182006_1000836 3300015261 Bacteria 20653
45 Ga0182007_10006097 3300015262 Bacteria 5208
46 Ga0182005_1000004 3300015265 Bacteria 609645
47 Ga0182005_1008177 3300015265 Bacteria 3097
48 Ga0182005_1011117 3300015265 Bacteria 2573
49 Ga0209564_1000009 3300025295 Bacteria 950196
50 Ga0209758_1008028 3300025297 Bacteria 6975
51 Ga0209257_1021292 3300025304 Bacteria 2361
52 Ga0207680_10000005 3300025903 Bacteria 660983
53 Ga0207647_10000085 3300025904 Bacteria 71205
54 Ga0207699_10070500 3300025906 Bacteria 2134
55 Ga0207654_10121903 3300025911 Bacteria 1638
56 Ga0207649_10010915 3300025920 Bacteria 4995
57 Ga0207694_10000419 3300025924 Bacteria 39631
58 Ga0207650_10030931 3300025925 Bacteria 3862
59 Ga0207659_10165235 3300025926 Bacteria 1741
60 Ga0207664_10020907 3300025929 Unclassified 4857
61 Ga0207664_10273022 3300025929 Bacteria 1482
62 Ga0207669_10202505 3300025937 Bacteria 1442
63 Ga0207691_10056003 3300025940 Bacteria 3593
64 Ga0207658_10083286 3300025986 Bacteria 2458
65 Ga0207641_10351318 3300026088 Bacteria 1405
66 Ga0207641_10465821 3300026088 Bacteria 1223
67 Ga0268266_10000004 3300028379 Bacteria 1495817
68 Ga0268266_10007248 3300028379 Bacteria 10028
69 Ga0268264_10050331 3300028381 Bacteria 3469
70 Ga0268264_10181913 3300028381 Bacteria 1910
71 Ga0265338_10076941 3300028800 Bacteria 2823
72 Ga0265338_10172545 3300028800 Bacteria 1656
73 Ga0265330_10054183 3300031235 Bacteria 1754
74 Ga0265332_10001551 3300031238 Bacteria 12631
75 Ga0265329_10045027 3300031242 Bacteria 1411
76 Ga0265340_10062010 3300031247 Bacteria 1787
77 Ga0265339_10023604 3300031249 Bacteria 3554
78 Ga0265331_10000837 3300031250 Bacteria 25082
79 Ga0265327_10000218 3300031251 Bacteria 116690
80 Ga0265316_10010662 3300031344 Bacteria 8355
81 Ga0307408_100486831 3300031548 Bacteria 1077
82 Ga0265313_10039050 3300031595 Bacteria 2358
83 Ga0265342_10000019 3300031712 Bacteria 177943
84 Ga0265342_10001600 3300031712 Bacteria 20914
85 Ga0307406_10003951 3300031901 Bacteria 8058
86 Ga0307412_10004615 3300031911 Bacteria 7680
87 Ga0307409_100002858 3300031995 Bacteria 9143
88 Ga0307411_10202674 3300032005 Bacteria 1525
89 Ga0307510_10002029 3300033180 Bacteria 22871
90 Ga0307510_10060814 3300033180 Bacteria 3882
91 Ga0373937_0279394 3300036401 Bacteria 1577
92 Ga0316582_0024704 3300036647 Bacteria 3599
93 Ga0395900_0440387 3300037418 Bacteria 1261
94 Ga0316581_0011735 3300037588 Bacteria 2455
95 Ga0439436_0000001 3300041404 Bacteria 299341
96 Ga0439465_0003143 3300041413 Bacteria 5389
97 Ga0439445_0037853 3300042004 Bacteria 1274
98 Ga0450908_000247 3300042184 Bacteria 10689
99 Ga0451577_0440457 3300042876 Bacteria 1183
100 Ga0466982_0000107 3300044672 Bacteria 20440
101 Ga0451576_0000223 3300045051 Bacteria 139383
102 Ga0451576_0095365 3300045051 Bacteria 3094
103 Ga0495617_004375 3300046452 Bacteria 5148
104 Ga0495638_0000495 3300046460 Bacteria 46853
105 Ga0495650_0000027 3300046471 Bacteria 475071
106 Ga0495650_0000072 3300046471 Bacteria 257886
107 Ga0495650_0001715 3300046471 Bacteria 20119
108 Ga0495584_0003783 3300046491 Bacteria 8250
109 Ga0495585_0000168 3300046492 Bacteria 70692
110 Ga0495585_0000547 3300046492 Bacteria 35540
111 Ga0495585_0005718 3300046492 Bacteria 7800
112 Ga0495594_0139782 3300046499 Bacteria 1373
113 Ga0495596_0001052 3300046500 Bacteria 16406
114 Ga0495607_0000003 3300046501 Bacteria 366900
115 Ga0495607_0000046 3300046501 Bacteria 123998
116 Ga0495607_0004233 3300046501 Bacteria 10641
117 Ga0495607_0021383 3300046501 Bacteria 4072
118 Ga0495607_0065333 3300046501 Bacteria 2052
119 Ga0495606_0000460 3300046507 Bacteria 66820
120 Ga0495606_0001085 3300046507 Bacteria 38987
121 Ga0495606_0040935 3300046507 Bacteria 3110
122 Ga0495610_0006247 3300046512 Bacteria 8260
123 Ga0495610_0010881 3300046512 Bacteria 5614
124 Ga0495630_0179623 3300046517 Bacteria 1613
125 Ga0495631_0000354 3300046518 Bacteria 31607
126 Ga0495631_0008666 3300046518 Bacteria 5118
127 Ga0495631_0010954 3300046518 Bacteria 4475
128 Ga0495637_0000436 3300046520 Bacteria 30423
129 Ga0495637_0023591 3300046520 Bacteria 2793
130 Ga0495644_0015331 3300046523 Bacteria 2934
131 Ga0495648_0000685 3300046524 Bacteria 36230
132 Ga0495654_0000038 3300046530 Bacteria 185693
133 Ga0495587_0050307 3300046536 Bacteria 2465
134 Ga0495609_0010763 3300046538 Bacteria 4376
135 Ga0495622_0012659 3300046557 Bacteria 3910
136 Ga0495622_0078840 3300046557 Bacteria 1516
137 Ga0495633_0002307 3300046558 Bacteria 13601
138 Ga0495656_0081524 3300046615 Bacteria 1461
139 Ga0495668_0005154 3300046616 Bacteria 8973
140 Ga0495668_0009348 3300046616 Bacteria 6027
141 Ga0495668_0009988 3300046616 Bacteria 5781
142 Ga0495611_0000001 3300046648 Bacteria 2628469
143 Ga0495611_0005958 3300046648 Bacteria 5200
144 Ga0495611_0020330 3300046648 Bacteria 2856
145 Ga0495625_0000001 3300046660 Bacteria 1641829
146 Ga0495625_0011360 3300046660 Bacteria 7268
147 Ga0495661_0000697 3300046665 Bacteria 33428
148 Ga0495661_0026803 3300046665 Bacteria 3706
149 Ga0495670_0000418 3300046691 Bacteria 20425
150 Ga0495670_0008566 3300046691 Bacteria 5035
151 Ga0495670_0062977 3300046691 Bacteria 1867
152 Ga0495671_0000006 3300046692 Bacteria 500471
153 Ga0495671_0000112 3300046692 Bacteria 72401
154 Ga0495649_0023214 3300046694 Bacteria 3466
155 Ga0495589_0000066 3300046794 Bacteria 99653
156 Ga0495589_0075647 3300046794 Bacteria 1642
157 Ga0495589_0097016 3300046794 Bacteria 1428
158 Ga0495600_0008092 3300046809 Bacteria 6449
159 Ga0495660_0000097 3300046810 Bacteria 94152
160 Ga0495660_0000367 3300046810 Bacteria 39592
161 Ga0495581_0048098 3300047315 Bacteria 2463
162 Ga0495604_0178167 3300047317 Bacteria 1488
163 Ga0495675_0158316 3300047444 Bacteria 1395
164 Ga0495677_0039631 3300047445 Bacteria 1722
165 Ga0495679_000001 3300047446 Bacteria 1607568
166 Ga0495673_0000001 3300047469 Bacteria 1630730
167 Ga0495673_0000003 3300047469 Bacteria 1491337
168 Ga0495673_0005612 3300047469 Bacteria 7549
169 Ga0495673_0006297 3300047469 Bacteria 6992
170 Ga0495686_0000026 3300047472 Bacteria 383637
171 Ga0495593_0001145 3300047673 Bacteria 15460
172 Ga0495602_0098098 3300048088 Bacteria 2412
173 Ga0496106_0120406 3300048909 Bacteria 2051
174 Ga0496108_0001768 3300048911 Bacteria 17206
175 Ga0496109_0002933 3300048912 Bacteria 14263
176 Ga0496112_0116004 3300048915 Bacteria 2648
177 Ga0496113_0007383 3300048916 Bacteria 7067
178 Ga0496113_0174038 3300048916 Bacteria 1705
179 Ga0496118_0001618 3300048921 Bacteria 33290
180 Ga0496118_0008863 3300048921 Bacteria 10284
181 Ga0496119_0005521 3300048922 Bacteria 12061
182 Ga0496120_0026504 3300048923 Bacteria 3578
183 Ga0496121_0000044 3300048924 Bacteria 337672
184 Ga0496121_0000979 3300048924 Bacteria 51171
185 Ga0496121_0014134 3300048924 Bacteria 8505
186 Ga0496121_0187076 3300048924 Bacteria 1488
187 Ga0496122_0041651 3300048925 Bacteria 3627
188 Ga0496122_0089188 3300048925 Bacteria 2110
189 Ga0496122_0098220 3300048925 Bacteria 1967
190 Ga0496123_0003751 3300048926 Bacteria 16660
191 Ga0496123_0005956 3300048926 Bacteria 12006
192 Ga0496123_0008419 3300048926 Bacteria 9478
193 Ga0496126_0045582 3300048929 Bacteria 4029
194 Ga0495678_000719 3300049459 Bacteria 30063
195 Ga0495682_0003661 3300049460 Bacteria 6776
196 Ga0501034_0080677 3300049571 Bacteria 3256
197 nmdc:mga0k408_3313_c1 3300050493 Bacteria 8522
198 nmdc:mga0qj67_121797_c1 3300050509 Bacteria 2110
199 nmdc:mga08y16_372397_c1 3300050511 Bacteria 1465
200 nmdc:mga08y16_545967_c1 3300050511 Bacteria 1173
201 nmdc:mga0rr50_62561_c1 3300050513 Bacteria 2808
202 nmdc:mga08x19_172089_c1 3300050514 Bacteria 1475
203 nmdc:mga0sz30_16916_c1 3300050516 Bacteria 2902
204 Ga0500643_000002 3300053087 Bacteria 1277657
205 Ga0500646_0009369 3300053090 Bacteria 2508
206 Ga0500555_000213 3300053103 Bacteria 26950
207 Ga0500618_000091 3300053125 Bacteria 73830
208 Ga0500645_001827 3300053730 Bacteria 10204

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048922 Ga0496119_0005521 Ga0496119_0005521_11246_12043 265
2 3300048911 Ga0496108_0001768 Ga0496108_0001768_12710_13729 289
3 3300048912 Ga0496109_0002933 Ga0496109_0002933_8817_9836 289
4 3300048915 Ga0496112_0116004 Ga0496112_0116004_230_1249 289
5 3300048916 Ga0496113_0007383 Ga0496113_0007383_1064_2083 289
6 3300003771 Ga0055526_1000029 Ga0055526_100002970 292
7 3300025295 Ga0209564_1000009 Ga0209564_100000963 292
8 3300044672 Ga0466982_0000107 Ga0466982_0000107_11371_12348 295
9 3300031595 Ga0265313_10039050 Ga0265313_100390502 298
10 3300005841 Ga0068863_100086231 Ga0068863_1000862313 304
11 3300005983 Ga0081540_1105376 Ga0081540_11053762 304
12 3300006195 Ga0075366_10007499 Ga0075366_100074994 304
13 3300026088 Ga0207641_10465821 Ga0207641_104658212 304
14 3300028800 Ga0265338_10172545 Ga0265338_101725451 304
15 3300031712 Ga0265342_10001600 Ga0265342_100016001 304
16 3300036401 Ga0373937_0279394 Ga0373937_0279394_328_1296 304
17 3300046615 Ga0495656_0081524 Ga0495656_0081524_415_1401 304
18 3300050493 nmdc:mga0k408_3313_c1 nmdc:mga0k408_3313_c1_6100_7110 304
19 3300028800 Ga0265338_10076941 Ga0265338_100769412 305
20 3300046501 Ga0495607_0004233 Ga0495607_0004233_1252_2253 305
21 3300005444 Ga0070694_100099805 Ga0070694_1000998052 306
22 3300005545 Ga0070695_100024472 Ga0070695_1000244722 306
23 3300006914 Ga0075436_100143168 Ga0075436_1001431683 306
24 3300009094 Ga0111539_10033287 Ga0111539_100332875 306
25 3300009147 Ga0114129_10411371 Ga0114129_104113711 306
26 3300014497 Ga0182008_10063983 Ga0182008_100639832 306
27 3300025906 Ga0207699_10070500 Ga0207699_100705002 306
28 3300031235 Ga0265330_10054183 Ga0265330_100541832 306
29 3300031238 Ga0265332_10001551 Ga0265332_100015513 306
30 3300031242 Ga0265329_10045027 Ga0265329_100450272 306
31 3300031247 Ga0265340_10062010 Ga0265340_100620102 306
32 3300031249 Ga0265339_10023604 Ga0265339_100236044 306
33 3300031250 Ga0265331_10000837 Ga0265331_1000083721 306
34 3300031251 Ga0265327_10000218 Ga0265327_1000021854 306
35 3300031344 Ga0265316_10010662 Ga0265316_100106626 306
36 3300031712 Ga0265342_10000019 Ga0265342_1000001993 306
37 3300046471 Ga0495650_0000072 Ga0495650_0000072_12897_13886 306
38 3300046471 Ga0495650_0001715 Ga0495650_0001715_9002_10066 306
39 3300046491 Ga0495584_0003783 Ga0495584_0003783_172_1164 306
40 3300046492 Ga0495585_0000547 Ga0495585_0000547_7255_8250 306
41 3300046492 Ga0495585_0005718 Ga0495585_0005718_4010_5002 306
42 3300046499 Ga0495594_0139782 Ga0495594_0139782_320_1330 306
43 3300046500 Ga0495596_0001052 Ga0495596_0001052_13560_14555 306
44 3300046501 Ga0495607_0065333 Ga0495607_0065333_1031_2023 306
45 3300046512 Ga0495610_0006247 Ga0495610_0006247_6860_7966 306
46 3300046517 Ga0495630_0179623 Ga0495630_0179623_281_1291 306
47 3300046518 Ga0495631_0008666 Ga0495631_0008666_2966_3961 306
48 3300046518 Ga0495631_0010954 Ga0495631_0010954_1312_2304 306
49 3300046520 Ga0495637_0000436 Ga0495637_0000436_9809_10873 306
50 3300046523 Ga0495644_0015331 Ga0495644_0015331_426_1421 306
51 3300046530 Ga0495654_0000038 Ga0495654_0000038_9837_10901 306
52 3300046536 Ga0495587_0050307 Ga0495587_0050307_466_1476 306
53 3300046538 Ga0495609_0010763 Ga0495609_0010763_1513_2508 306
54 3300046557 Ga0495622_0012659 Ga0495622_0012659_215_1210 306
55 3300046557 Ga0495622_0078840 Ga0495622_0078840_493_1503 306
56 3300046558 Ga0495633_0002307 Ga0495633_0002307_9029_10135 306
57 3300046616 Ga0495668_0005154 Ga0495668_0005154_5742_6734 306
58 3300046616 Ga0495668_0009348 Ga0495668_0009348_364_1359 306
59 3300046616 Ga0495668_0009988 Ga0495668_0009988_1603_2592 306
60 3300046648 Ga0495611_0005958 Ga0495611_0005958_977_1972 306
61 3300046648 Ga0495611_0020330 Ga0495611_0020330_1586_2578 306
62 3300046660 Ga0495625_0011360 Ga0495625_0011360_4648_5658 306
63 3300046665 Ga0495661_0026803 Ga0495661_0026803_2540_3532 306
64 3300046691 Ga0495670_0008566 Ga0495670_0008566_322_1314 306
65 3300046691 Ga0495670_0062977 Ga0495670_0062977_319_1314 306
66 3300046692 Ga0495671_0000006 Ga0495671_0000006_108567_109700 306
67 3300046794 Ga0495589_0075647 Ga0495589_0075647_420_1415 306
68 3300046794 Ga0495589_0097016 Ga0495589_0097016_211_1203 306
69 3300046809 Ga0495600_0008092 Ga0495600_0008092_5085_6095 306
70 3300047315 Ga0495581_0048098 Ga0495581_0048098_1178_2188 306
71 3300047317 Ga0495604_0178167 Ga0495604_0178167_434_1444 306
72 3300047444 Ga0495675_0158316 Ga0495675_0158316_341_1351 306
73 3300047445 Ga0495677_0039631 Ga0495677_0039631_620_1615 306
74 3300047469 Ga0495673_0000003 Ga0495673_0000003_1133696_1134691 306
75 3300047469 Ga0495673_0006297 Ga0495673_0006297_1537_2532 306
76 3300047673 Ga0495593_0001145 Ga0495593_0001145_13126_14136 306
77 3300048088 Ga0495602_0098098 Ga0495602_0098098_44_1054 306
78 3300048924 Ga0496121_0014134 Ga0496121_0014134_4713_5804 306
79 3300048926 Ga0496123_0005956 Ga0496123_0005956_7155_8261 306
80 3300049571 Ga0501034_0080677 Ga0501034_0080677_1470_2462 306
81 3300050511 nmdc:mga08y16_545967_c1 nmdc:mga08y16_545967_c1_172_1161 306
82 3300050513 nmdc:mga0rr50_62561_c1 nmdc:mga0rr50_62561_c1_1187_2164 306
83 3300050514 nmdc:mga08x19_172089_c1 nmdc:mga08x19_172089_c1_362_1339 306
84 3300053125 Ga0500618_000091 Ga0500618_000091_69066_70178 306
85 iso_pu_bacteria 2821131069 2821132398 306
86 iso_pu_bacteria 2857558681 2857563643 306
87 iso_pu_bacteria 2857564685 2857567052 306
88 3300031901 Ga0307406_10003951 Ga0307406_100039518 307
89 3300036647 Ga0316582_0024704 Ga0316582_0024704_1771_2757 307
90 3300037588 Ga0316581_0011735 Ga0316581_0011735_1419_2405 307
91 3300005354 Ga0070675_100080692 Ga0070675_1000806922 309
92 3300005435 Ga0070714_100084966 Ga0070714_1000849662 309
93 3300005543 Ga0070672_100071285 Ga0070672_1000712854 309
94 3300005543 Ga0070672_100202229 Ga0070672_1002022292 309
95 3300005548 Ga0070665_100000204 Ga0070665_10000020469 309
96 3300005548 Ga0070665_100207103 Ga0070665_1002071032 309
97 3300005843 Ga0068860_100172409 Ga0068860_1001724091 309
98 3300009094 Ga0111539_10029417 Ga0111539_100294173 309
99 3300009098 Ga0105245_10038386 Ga0105245_100383862 309
100 3300009174 Ga0105241_10208409 Ga0105241_102084091 309
101 3300025911 Ga0207654_10121903 Ga0207654_101219032 309
102 3300025925 Ga0207650_10030931 Ga0207650_100309315 309
103 3300025926 Ga0207659_10165235 Ga0207659_101652352 309
104 3300025929 Ga0207664_10020907 Ga0207664_100209073 309
105 3300025929 Ga0207664_10273022 Ga0207664_102730222 309
106 3300025937 Ga0207669_10202505 Ga0207669_102025051 309
107 3300025940 Ga0207691_10056003 Ga0207691_100560031 309
108 3300026088 Ga0207641_10351318 Ga0207641_103513181 309
109 3300028379 Ga0268266_10007248 Ga0268266_100072489 309
110 3300028381 Ga0268264_10050331 Ga0268264_100503312 309
111 3300031548 Ga0307408_100486831 Ga0307408_1004868311 309
112 3300031995 Ga0307409_100002858 Ga0307409_1000028582 309
113 3300032005 Ga0307411_10202674 Ga0307411_102026741 309
114 3300037418 Ga0395900_0440387 Ga0395900_0440387_26_1087 309
115 3300042876 Ga0451577_0440457 Ga0451577_0440457_28_1074 309
116 3300045051 Ga0451576_0000223 Ga0451576_0000223_128244_129248 309
117 3300045051 Ga0451576_0095365 Ga0451576_0095365_1074_2066 309
118 3300046507 Ga0495606_0000460 Ga0495606_0000460_41564_42577 309
119 3300046507 Ga0495606_0001085 Ga0495606_0001085_12786_13934 309
120 3300048916 Ga0496113_0174038 Ga0496113_0174038_225_1154 309
121 3300050509 nmdc:mga0qj67_121797_c1 nmdc:mga0qj67_121797_c1_1062_2057 309
122 3300050511 nmdc:mga08y16_372397_c1 nmdc:mga08y16_372397_c1_409_1401 309
123 3300001904 JGI24736J21556_1000587 JGI24736J21556_10005875 310
124 3300002075 JGI24738J21930_10005524 JGI24738J21930_100055243 310
125 3300003578 Ga0006562J51391_1191754 Ga0006562J51391_11917542 310
126 3300003578 Ga0006562J51391_1191755 Ga0006562J51391_11917552 310
127 3300005262 Ga0065165_1000500 Ga0065165_10005007 310
128 3300005327 Ga0070658_10001301 Ga0070658_1000130111 310
129 3300005335 Ga0070666_10000008 Ga0070666_1000000858 310
130 3300005344 Ga0070661_100008250 Ga0070661_1000082505 310
131 3300005367 Ga0070667_100114718 Ga0070667_1001147182 310
132 3300005434 Ga0070709_10067889 Ga0070709_100678892 310
133 3300005548 Ga0070665_100316256 Ga0070665_1003162562 310
134 3300005843 Ga0068860_100122204 Ga0068860_1001222042 310
135 3300006186 Ga0075369_10057313 Ga0075369_100573132 310
136 3300009101 Ga0105247_10001253 Ga0105247_100012537 310
137 3300009551 Ga0105238_10014336 Ga0105238_100143365 310
138 3300013104 Ga0157370_10000291 Ga0157370_1000029116 310
139 3300013104 Ga0157370_10011706 Ga0157370_100117064 310
140 3300013105 Ga0157369_10003006 Ga0157369_100030066 310
141 3300013306 Ga0163162_10001185 Ga0163162_1000118516 310
142 3300013308 Ga0157375_10407792 Ga0157375_104077922 310
143 3300014497 Ga0182008_10002328 Ga0182008_100023287 310
144 3300014497 Ga0182008_10026150 Ga0182008_100261503 310
145 3300015261 Ga0182006_1000057 Ga0182006_1000057108 310
146 3300015261 Ga0182006_1000836 Ga0182006_10008369 310
147 3300015262 Ga0182007_10006097 Ga0182007_100060972 310
148 3300015265 Ga0182005_1000004 Ga0182005_1000004143 310
149 3300015265 Ga0182005_1008177 Ga0182005_10081772 310
150 3300015265 Ga0182005_1011117 Ga0182005_10111173 310
151 3300025297 Ga0209758_1008028 Ga0209758_10080285 310
152 3300025304 Ga0209257_1021292 Ga0209257_10212922 310
153 3300025903 Ga0207680_10000005 Ga0207680_10000005178 310
154 3300025904 Ga0207647_10000085 Ga0207647_100000855 310
155 3300025920 Ga0207649_10010915 Ga0207649_100109156 310
156 3300025924 Ga0207694_10000419 Ga0207694_1000041922 310
157 3300025986 Ga0207658_10083286 Ga0207658_100832862 310
158 3300028379 Ga0268266_10000004 Ga0268266_100000041347 310
159 3300028381 Ga0268264_10181913 Ga0268264_101819132 310
160 3300031911 Ga0307412_10004615 Ga0307412_100046156 310
161 3300033180 Ga0307510_10002029 Ga0307510_100020298 310
162 3300033180 Ga0307510_10060814 Ga0307510_100608142 310
163 3300041404 Ga0439436_0000001 Ga0439436_0000001_252988_253920 310
164 3300041413 Ga0439465_0003143 Ga0439465_0003143_499_1431 310
165 3300042004 Ga0439445_0037853 Ga0439445_0037853_226_1158 310
166 3300042184 Ga0450908_000247 Ga0450908_000247_1462_2394 310
167 3300046452 Ga0495617_004375 Ga0495617_004375_2001_2996 310
168 3300046460 Ga0495638_0000495 Ga0495638_0000495_367_1362 310
169 3300046471 Ga0495650_0000027 Ga0495650_0000027_70651_71586 310
170 3300046492 Ga0495585_0000168 Ga0495585_0000168_15958_16953 310
171 3300046501 Ga0495607_0000003 Ga0495607_0000003_273700_274635 310
172 3300046501 Ga0495607_0000046 Ga0495607_0000046_44543_45538 310
173 3300046501 Ga0495607_0021383 Ga0495607_0021383_1380_2315 310
174 3300046507 Ga0495606_0040935 Ga0495606_0040935_536_1471 310
175 3300046512 Ga0495610_0010881 Ga0495610_0010881_2311_3243 310
176 3300046518 Ga0495631_0000354 Ga0495631_0000354_6155_7150 310
177 3300046520 Ga0495637_0023591 Ga0495637_0023591_1712_2707 310
178 3300046524 Ga0495648_0000685 Ga0495648_0000685_4908_5903 310
179 3300046648 Ga0495611_0000001 Ga0495611_0000001_780083_781078 310
180 3300046660 Ga0495625_0000001 Ga0495625_0000001_1134969_1135964 310
181 3300046665 Ga0495661_0000697 Ga0495661_0000697_27546_28541 310
182 3300046691 Ga0495670_0000418 Ga0495670_0000418_17093_18025 310
183 3300046692 Ga0495671_0000112 Ga0495671_0000112_30332_31327 310
184 3300046694 Ga0495649_0023214 Ga0495649_0023214_579_1511 310
185 3300046794 Ga0495589_0000066 Ga0495589_0000066_38388_39383 310
186 3300046810 Ga0495660_0000097 Ga0495660_0000097_17344_18339 310
187 3300046810 Ga0495660_0000367 Ga0495660_0000367_26369_27301 310
188 3300047446 Ga0495679_000001 Ga0495679_000001_807518_808513 310
189 3300047469 Ga0495673_0000001 Ga0495673_0000001_1186665_1187597 310
190 3300047469 Ga0495673_0005612 Ga0495673_0005612_57_1052 310
191 3300047472 Ga0495686_0000026 Ga0495686_0000026_216188_217165 310
192 3300048909 Ga0496106_0120406 Ga0496106_0120406_399_1331 310
193 3300048921 Ga0496118_0001618 Ga0496118_0001618_5011_5943 310
194 3300048921 Ga0496118_0008863 Ga0496118_0008863_1819_2796 310
195 3300048923 Ga0496120_0026504 Ga0496120_0026504_1118_2050 310
196 3300048924 Ga0496121_0000044 Ga0496121_0000044_146908_147840 310
197 3300048924 Ga0496121_0000979 Ga0496121_0000979_13906_14838 310
198 3300048924 Ga0496121_0187076 Ga0496121_0187076_540_1475 310
199 3300048925 Ga0496122_0041651 Ga0496122_0041651_2168_3100 310
200 3300048925 Ga0496122_0089188 Ga0496122_0089188_284_1219 310
201 3300048925 Ga0496122_0098220 Ga0496122_0098220_678_1610 310
202 3300048926 Ga0496123_0003751 Ga0496123_0003751_3737_4672 310
203 3300048926 Ga0496123_0008419 Ga0496123_0008419_2511_3443 310
204 3300048929 Ga0496126_0045582 Ga0496126_0045582_890_1822 310
205 3300049459 Ga0495678_000719 Ga0495678_000719_10605_11600 310
206 3300049460 Ga0495682_0003661 Ga0495682_0003661_595_1590 310
207 3300050516 nmdc:mga0sz30_16916_c1 nmdc:mga0sz30_16916_c1_1272_2204 310
208 3300053087 Ga0500643_000002 Ga0500643_000002_1043898_1044893 310
209 3300053090 Ga0500646_0009369 Ga0500646_0009369_454_1389 310
210 3300053103 Ga0500555_000213 Ga0500555_000213_9168_10163 310
211 3300053730 Ga0500645_001827 Ga0500645_001827_2040_3035 310
212 iso_pu_bacteria 2593339239 2595452461 310
213 iso_pu_bacteria 2734482264 2735836661 310
214 iso_pu_bacteria 2738543009 2739228577 310
215 iso_pu_bacteria 2818991440 2819562626 310
216 iso_pu_bacteria 2842914999 2842916410 310
217 iso_pu_bacteria 2842918807 2842919313 310
218 iso_pu_bacteria 2884338543 2884340779 310
219 iso_pu_bacteria 2904463128 2904463231 310
220 iso_pu_bacteria 2919085039 2919085454 310
221 iso_pu_bacteria 2919404418 2919405368 310
222 iso_pu_bacteria 2941471342 2941471500 310
223 iso_pu_bacteria 2953994433 2953998241 310

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

9

257

0.94

PF04321

RmlD_sub_bind

RmlD substrate binding domain

5

170

0.9

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

10

320

0.85

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

9

186

0.82

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

10

256

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wok-assembly1.cif.gz_A crystal structure of udp-glucose 4-epimerase from brucella ovis in complex with nad 0.9723 2 302
2c20-assembly3.cif.gz_F crystal structure of udp-glucose 4-epimerase 0.97 2 310
7xpq-assembly1.cif.gz_A crystal structure of udp-glc/glcnac 4-epimerase with nad/udp-glcnac 0.9643 5 307
2udp-assembly1.cif.gz_A udp-galactose 4-epimerase complexed with udp-phenol 0.9638 5 310
2c20-assembly3.cif.gz_F crystal structure of udp-glucose 4-epimerase 0.9638 2 310
ID Description Score Start End Superfamily
2c20A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.961 2 237 3.40.50.720
4wokA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9585 2 237 3.40.50.720
af_Q4DN47_4_373_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9534 2 303 3.40.50.720
af_E9AHP8_1_313_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9393 2 237 3.40.50.720
af_A0A1D6K005_288_418_3.90.25.10 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9385 181 306 3.90.25.10
ID Description Score Start End GO Terms
AF-A0A6P3BM00-F1-model_v4 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.9869 2 307 GO:0003978
GO:0033499
AF-G6C3G9-F1-model_v4 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) 0.9866 2 165 GO:0016853
GO:0033499
AF-A0A1W9LJM9-F1-model_v4 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) 0.986 2 147 GO:0016853
GO:0033499
AF-A0A2V8WCR2-F1-model_v4 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) 0.9853 2 163 GO:0016853
GO:0033499
AF-A0A2W0BNE1-F1-model_v4 UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase) 0.985 35 306 GO:0003978
GO:0006012

Feature Viewer

pLDDT pTM Quality
93.18 0.91 High
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Predicted Structure (AlphaFold2)

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