F335647

General Info

Members Datasets Scaffolds Average Seq Length
223 162 447 553

Family's Representative Sequence

Representative Sequence 3300025294|Ga0209025_1006662|Ga0209025_10066627
Length 582
Sequence MDIINLNPLSTVGLSIKTNDKKRRGFTMNQTNDRLWVAALGGVNEIGKNMYVLQYGNDIVVIDCGSKFPDESLLGIDLIIPDISYLLSNQDKVRAIIVTHGHEDHIGGIPYLLKQLQIPVYASRLTLGLIEIKLREHAILNETHMVRIDANSKLEFGAIQCSFFNTNHSIPDCLGIVFDTPEGTVVHTGDFKFDMTPVNKQYPDLHRMSDIGKKGVLMLLSESTNAERPGFTPSERLVGAHIEEAFNKADRRVFISTFASNVYRLQQVVDAAISTNRKLTLLGRSMLNVVSVAQELGYLNIPSGMLVDTDEAKKLPPDKIAVLCTGSQGEPMAALARLASSTQRQMKVEAGDLVIIAANPIPGNERNVARIVDNLFALGAKIIYGSRSELHVSGHGSQEELKLMLTLMKPKYFVPIHGEFRMLHQHRELAEAVGVRHENIFILNNGDVVETDNGVTRQSGRIPAGQILVDGLGIGDIGNIVLRDRRQLSADGILIVVVTLSKIEGQLLSRPDTISRGFVYVRNSEELIQDINQLVIETVEKMKHEQISQWNTMKKTLKDSLGQYLYARTKRRPIILPIIIEV

Samples

Sample ID Description Type Environment
1 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
6 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
7 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
8 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
9 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
10 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
11 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
12 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
13 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
14 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
15 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
16 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
17 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
18 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
19 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
20 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
21 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
26 3300030083 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JPPOOL-T1 Metagenome Unclassified
27 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
28 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
29 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
30 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
31 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
32 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
33 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
34 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
35 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
36 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
37 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
38 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
39 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
40 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
41 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
42 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
43 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
44 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
45 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
46 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
47 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
48 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
49 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
50 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
51 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
52 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
53 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
54 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
55 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
56 2551306519 Bacillus sp. WBUNB004 Isolate Rhizosphere
57 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
58 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
59 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
60 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
61 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
62 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
63 2643221731 Bacillus sp. Root147 Isolate Unclassified
64 2643221732 Bacillus sp. Root239 Isolate Unclassified
65 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
66 2671180694 Paenibacillus sp. A3 Isolate Unclassified
67 2684622632 Bacillus cereus 905 Isolate Unclassified
68 2695420987 Bacillus thuringiensis KNU-07 Isolate Unclassified
69 2703719227 Bacillus mycoides GOE6 Isolate Rhizosphere
70 2718218445 Bacillus sp. B25(2016b) Isolate Rhizosphere
71 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
72 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
73 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
74 2738541295 Bacillus sp. OK085 Isolate Unclassified
75 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
76 2738543010 Bacillus sp. YR335 Isolate Unclassified
77 2738543017 Bacillus sp. OV186 Isolate Unclassified
78 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
79 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
80 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
81 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
82 2788500588 Lysinibacillus sp. YS11 Isolate Unclassified
83 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
84 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
85 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
86 2818991441 Niallia circulans 3243 Isolate Rhizosphere
87 2818991451 Lysinibacillus fusiformis 3193 Isolate Unclassified
88 2818991459 Paenibacillus sp. 597 Isolate Unclassified
89 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
90 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
91 2842682962 Bacillus sp. R-72492 Isolate Unclassified
92 2842882022 Bacillus sp. R-71893 Isolate Unclassified
93 2849139964 Bacillus sp. R-71875 Isolate Unclassified
94 2852673933 Sporosarcina sp. JAI121 Isolate Rhizosphere
95 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
96 2857472729 Cohnella sp. R-74144 Isolate Unclassified
97 2857581216 Bacillus sp. R-71922 Isolate Unclassified
98 2857586860 Bacillus sp. R-71935 Isolate Unclassified
99 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
100 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
101 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
102 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
103 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
104 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
105 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
106 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
107 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
108 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
109 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
110 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
111 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
112 2904606771 Lysinibacillus macroides 1284 Isolate Rhizosphere
113 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
114 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
115 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
116 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
117 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
118 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
119 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
120 2919720352 Priestia megaterium 4340 Isolate Unclassified
121 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
122 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
123 2929004312 Priestia megaterium 1104 Isolate Unclassified
124 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
125 2929233124 Bacillus sp. R-74298 Hybrid assembly Isolate Unclassified
126 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
127 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
128 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
129 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
130 2938917290 Bacillus sp. CR71 Isolate Unclassified
131 2939593269 Lysinibacillus parviboronicapiens 736 Isolate Rhizosphere
132 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
133 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
134 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
135 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
136 2947426588 Bacillus sp. RZ2MS9 Isolate Rhizosphere
137 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
138 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
139 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
140 2965761152 Bacillus sp. COPE52 Isolate Unclassified
141 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
142 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
143 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
144 2977254563 Bacillus sp. SORGH_AS 510 Isolate Unclassified
145 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
146 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
147 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
148 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
149 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
150 3006826541 Bacillus haikouensis CrR16 Isolate Unclassified
151 3006978542 Bacillus sp. FJAT-49705 Isolate Rhizosphere
152 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
153 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
154 8022792930 Bacillus sp. Xin Isolate Rhizosphere
155 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
156 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
157 8023438354 Bacillus sp. BH2 Isolate Unclassified
158 8023444577 Bacillus sp. BH32 Isolate Unclassified
159 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
160 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
161 8055531788 Lysinibacillus pakistanensis LY1 Isolate Rhizosphere
162 8057582654 Bacillus arachidis YX15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 46.64
Metatranscriptomes 0
Isolates 53.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.28
Nodule 0.9
Rhizoplane 7.17
Rhizosphere 32.29
Stem 0
Stem Tuber 0
Unclassified 0.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209025_1006662 3300025294 Bacteria 8873
2 JGI25151J46595_10001097 3300003187 Bacteria 19962
3 JGI25151J46595_10001551 3300003187 Bacteria 15328
4 JGI25151J46595_10001823 3300003187 Bacteria 13745
5 JGI25151J46595_10002631 3300003187 Bacteria 10571
6 JGI25151J46595_10005850 3300003187 Bacteria 6290
7 JGI25151J46595_10015181 3300003187 Bacteria 3407
8 JGI25151J46595_10019038 3300003187 Bacteria 2930
9 JGI25151J46595_10030995 3300003187 Bacteria 2094
10 JGI25151J46595_10032193 3300003187 Bacteria 2036
11 rootH1_10003224 3300003316 Bacteria 26416
12 rootH1_10003224 3300003323 Bacteria 5855
13 rootL2_10108196 3300003322 Bacteria 10157
14 Ga0055538_1000116 3300003751 Bacteria 61220
15 Ga0055532_1000004 3300003758 Bacteria 471824
16 Ga0055532_1000100 3300003758 Bacteria 92894
17 Ga0055528_1011594 3300003790 Bacteria 3486
18 Ga0055541_1001394 3300003841 Bacteria 5242
19 Ga0105244_10046765 3300009036 Bacteria 2222
20 Ga0105250_10001674 3300009092 Bacteria 11733
21 Ga0105243_10089628 3300009148 Bacteria 2529
22 Ga0157371_10021235 3300013102 Bacteria 4768
23 Ga0157377_10013484 3300014745 Bacteria 4137
24 Ga0209784_100159 3300025224 Bacteria 61283
25 Ga0209784_100488 3300025224 Bacteria 15865
26 Ga0209566_100122 3300025225 Bacteria 101406
27 Ga0209147_100010 3300025229 Bacteria 741391
28 Ga0209147_100058 3300025229 Bacteria 252750
29 Ga0209437_100647 3300025233 Bacteria 20285
30 Ga0209673_1002219 3300025273 Bacteria 14134
31 Ga0209130_1002036 3300025284 Bacteria 11004
32 Ga0209130_1003177 3300025284 Bacteria 7253
33 Ga0209130_1005635 3300025284 Bacteria 4288
34 Ga0209130_1005965 3300025284 Bacteria 4074
35 Ga0209675_1000755 3300025291 Bacteria 21747
36 Ga0209676_1000663 3300025292 Bacteria 49326
37 Ga0209676_1000898 3300025292 Bacteria 37630
38 Ga0209025_1000273 3300025294 Bacteria 119753
39 Ga0209025_1000698 3300025294 Bacteria 57275
40 Ga0209025_1000774 3300025294 Bacteria 52999
41 Ga0209025_1000931 3300025294 Bacteria 44624
42 Ga0209025_1001536 3300025294 Bacteria 29449
43 Ga0209025_1003156 3300025294 Bacteria 16066
44 Ga0209025_1003227 3300025294 Bacteria 15784
45 Ga0209025_1003279 3300025294 Bacteria 15579
46 Ga0209025_1003317 3300025294 Bacteria 15473
47 Ga0209025_1003565 3300025294 Bacteria 14576
48 Ga0209025_1004497 3300025294 Bacteria 12062
49 Ga0209025_1005713 3300025294 Bacteria 10000
50 Ga0209025_1007292 3300025294 Bacteria 8295
51 Ga0209025_1009098 3300025294 Bacteria 6999
52 Ga0207696_1004430 3300025711 Bacteria 6053
53 Ga0207696_1008845 3300025711 Bacteria 3806
54 Ga0207696_1010300 3300025711 Bacteria 3434
55 Ga0207655_1004913 3300025728 Bacteria 9275
56 Ga0207713_1004887 3300025735 Bacteria 8583
57 Ga0207713_1016053 3300025735 Bacteria 3817
58 Ga0210000_1003017 3300027462 Bacteria 2410
59 Ga0237817_10013 3300030083 Bacteria 75922
60 Ga0237817_10055 3300030083 Bacteria 38602
61 Ga0439433_0000862 3300041999 Bacteria 6027
62 Ga0451576_0001053 3300045051 Bacteria 50755
63 Ga0466967_0110515 3300045976 Bacteria 2525
64 Ga0495603_0014881 3300046455 Bacteria 4706
65 Ga0495603_0027858 3300046455 Bacteria 3407
66 Ga0495649_0042362 3300046694 Bacteria 2488
67 Ga0495683_0058584 3300047323 Bacteria 1913
68 Ga0496100_0000416 3300048903 Bacteria 20605
69 Ga0496101_0001563 3300048904 Bacteria 13721
70 Ga0496102_0020338 3300048905 Bacteria 5866
71 Ga0496102_0037311 3300048905 Bacteria 4383
72 Ga0496103_0004693 3300048906 Bacteria 8269
73 Ga0496103_0011311 3300048906 Bacteria 5283
74 Ga0496104_0012987 3300048907 Bacteria 7497
75 Ga0496107_0026913 3300048910 Bacteria 4081
76 Ga0496109_0001286 3300048912 Bacteria 20824
77 Ga0496110_0013888 3300048913 Bacteria 6671
78 Ga0496111_0006817 3300048914 Bacteria 7449
79 Ga0496112_0001302 3300048915 Bacteria 18950
80 Ga0496113_0023724 3300048916 Bacteria 4352
81 Ga0496116_0029708 3300048919 Bacteria 3935
82 Ga0496116_0045853 3300048919 Bacteria 2955
83 Ga0496116_0050985 3300048919 Unclassified 2752
84 Ga0496116_0093022 3300048919 Bacteria 1827
85 Ga0496119_0005014 3300048922 Bacteria 12907
86 Ga0496119_0012295 3300048922 Bacteria 6973
87 Ga0496119_0068135 3300048922 Bacteria 2096
88 Ga0496120_0001765 3300048923 Bacteria 24369
89 Ga0496121_0041520 3300048924 Bacteria 4018
90 Ga0496122_0002431 3300048925 Bacteria 26488
91 Ga0496122_0008755 3300048925 Bacteria 10827
92 Ga0496122_0025892 3300048925 Bacteria 5078
93 Ga0496122_0058477 3300048925 Unclassified 2853
94 Ga0496122_0062246 3300048925 Bacteria 2733
95 Ga0496123_0019427 3300048926 Bacteria 5355
96 Ga0496124_0000207 3300048927 Bacteria 116491
97 Ga0496124_0000826 3300048927 Bacteria 50478
98 Ga0496124_0065828 3300048927 Bacteria 3020
99 Ga0496125_0001122 3300048928 Bacteria 40904
100 Ga0496125_0001304 3300048928 Bacteria 36984
101 Ga0496125_0094054 3300048928 Bacteria 2235
102 Ga0496126_0002760 3300048929 Bacteria 23162
103 Ga0496126_0004419 3300048929 Bacteria 16826
104 Ga0496126_0020313 3300048929 Bacteria 6517
105 Ga0501208_000123 3300049655 Bacteria 4849
106 2512639691 2512564013 Bacteria 6286191
107 2512732271 2512564039 Bacteria 8739048
108 2553391523 2551306519 Bacteria 5465154
109 2571527164 2571042143 Bacteria 6986194
110 2587744119 2585428059 Bacteria 8696589
111 2595089218 2593339131 Bacteria 5116855
112 2595090836 2593339131 Bacteria 5116855
113 2601637962 2600255286 Bacteria 5390125
114 2643736391 2643221543 Bacteria 6628015
115 2644424154 2643221676 Bacteria 8119172
116 2644719206 2643221731 Bacteria 5623886
117 2644722387 2643221732 Bacteria 5756404
118 2672337645 2671180330 Bacteria 5521719
119 2673821326 2671180694 Bacteria 7506943
120 2685149540 2684622632 Bacteria 5380049
121 2698323640 2695420987 Bacteria 6152737
122 2705997507 2703719227 Bacteria 5631989
123 2721506325 2718218445 Bacteria 5113413
124 2723602113 2721755693 Bacteria 6126117
125 2728535071 2728368933 Bacteria 7044283
126 2730138179 2728369359 Bacteria 5621728
127 2738813283 2738541295 Bacteria 5730091
128 2738839900 2738541299 Bacteria 4020721
129 2739232895 2738543010 Bacteria 5583595
130 2739268520 2738543017 Bacteria 4271950
131 2739270617 2738543017 Bacteria 4271950
132 2753812353 2751185905 Bacteria 6142767
133 2757564973 2757320391 Bacteria 4746095
134 2757568579 2757320391 Bacteria 4746095
135 2777763580 2775507177 Bacteria 4384303
136 2777764054 2775507177 Bacteria 4384303
137 2777835795 2775507192 Bacteria 4622234
138 2777839618 2775507192 Bacteria 4622234
139 2791215389 2788500588 Bacteria 4584915
140 2793185454 2791355222 Bacteria 5898266
141 2802439918 2802428803 Bacteria 5806948
142 2816861969 2816332186 Bacteria 5331395
143 2819571106 2818991441 Bacteria 5062707
144 2819629102 2818991451 Bacteria 4697364
145 2819671661 2818991459 Bacteria 8736032
146 2819673721 2818991459 Bacteria 8736032
147 2819707889 2818991465 Bacteria 5388835
148 2821113220 2821111986 Bacteria 6894338
149 2842686753 2842682962 Bacteria 5589973
150 2842885145 2842882022 Bacteria 6158489
151 2849141701 2849139964 Bacteria 5613304
152 2852675199 2852673933 Bacteria 3347676
153 2857456003 2857453340 Bacteria 8090534
154 2857476023 2857472729 Bacteria 6568124
155 2857583847 2857581216 Bacteria 5522813
156 2857588548 2857586860 Bacteria 4354574
157 2857589233 2857586860 Bacteria 4354574
158 2857592398 2857591370 Bacteria 6569758
159 2857605781 2857604169 Bacteria 5111450
160 2857612173 2857609550 Bacteria 3753890
161 2864738995 2864733723 Bacteria 6770668
162 2865003069 2865002811 Bacteria 6333767
163 2885529740 2885526491 Bacteria 7164189
164 2889045276 2889042446 Bacteria 7618936
165 2889050091 2889049205 Bacteria 7524325
166 2889278182 2889276214 Bacteria 5979355
167 2904165016 2904162308 Bacteria 7086713
168 2904492150 2904490793 Bacteria 7046938
169 2904527583 2904524088 Bacteria 5887454
170 2904598111 2904595352 Bacteria 6124848
171 2904610612 2904606771 Bacteria 4684500
172 2904756716 2904755435 Bacteria 7986759
173 2915600909 2915597211 Bacteria 6475886
174 2919143772 2919143609 Bacteria 6219228
175 2919161379 2919160200 Bacteria 6929020
176 2919416444 2919414237 Bacteria 5429133
177 2919416619 2919414237 Bacteria 5429133
178 2919428240 2919425241 Bacteria 8055701
179 2919520692 2919517244 Bacteria 5858162
180 2919724586 2919720352 Bacteria 5986006
181 2928097381 2928093941 Bacteria 5965005
182 2928512046 2928510474 Bacteria 4815308
183 2929004527 2929004312 Bacteria 5678476
184 2929186054 2929183550 Bacteria 6377511
185 2929234817 2929233124 Bacteria 5948380
186 2931388709 2931384279 Bacteria 7299545
187 2936342089 2936340661 Bacteria 5139038
188 2936343578 2936340661 Bacteria 5139038
189 2936364061 2936361878 Bacteria 5632809
190 2938649262 2938649242 Bacteria 7118381
191 2938918990 2938917290 Bacteria 5914775
192 2939596413 2939593269 Bacteria 4798695
193 2939682805 2939679117 Bacteria 6921672
194 2939707339 2939702853 Bacteria 5139229
195 2945992714 2945991243 Bacteria 7008369
196 2946055466 2946053406 Bacteria 6978655
197 2947428361 2947426588 Bacteria 5357194
198 2956897359 2956897341 Bacteria 5447711
199 2960319411 2960319331 Bacteria 5502575
200 2960381671 2960375949 Bacteria 5361395
201 2965764324 2965761152 Bacteria 5806513
202 2968562179 2968558590 Bacteria 6956864
203 2971406576 2971403814 Bacteria 7370929
204 2971416334 2971410472 Bacteria 8311090
205 2977259507 2977254563 Bacteria 4828420
206 2988228064 2988225383 Bacteria 7221625
207 2990275372 2990275345 Bacteria 4887158
208 2996633503 2996632988 Bacteria 6921523
209 2996706910 2996706504 Bacteria 5757485
210 3001892910 3001892409 Bacteria 6328293
211 3006829174 3006826541 Bacteria 4678913
212 3006979812 3006978542 Bacteria 5328100
213 3006984720 3006984091 Bacteria 4207523
214 648168617 648028048 Bacteria 5394884
215 8022794605 8022792930 Bacteria 5693794
216 8022794991 8022792930 Bacteria 5693794
217 8022893706 8022893055 Bacteria 5300455
218 8022915973 8022914991 Bacteria 5584517
219 8023442328 8023438354 Bacteria 5779374
220 8023448077 8023444577 Bacteria 5661597
221 8054468485 8054465665 Bacteria 7323556
222 8054801693 8054795415 Bacteria 9785225
223 8055536550 8055531788 Bacteria 5249694
224 8057584447 8057582654 Bacteria 5218944
225 Ga0209025_1006662
226 JGI25151J46595_10001097
227 JGI25151J46595_10001551
228 JGI25151J46595_10001823
229 JGI25151J46595_10002631
230 JGI25151J46595_10005850
231 JGI25151J46595_10015181
232 JGI25151J46595_10019038
233 JGI25151J46595_10030995
234 JGI25151J46595_10032193
235 rootH1_10003224
236 rootL2_10108196
237 Ga0055538_1000116
238 Ga0055532_1000004
239 Ga0055532_1000100
240 Ga0055528_1011594
241 Ga0055541_1001394
242 Ga0105244_10046765
243 Ga0105250_10001674
244 Ga0105243_10089628
245 Ga0157371_10021235
246 Ga0157377_10013484
247 Ga0209784_100159
248 Ga0209784_100488
249 Ga0209566_100122
250 Ga0209147_100010
251 Ga0209147_100058
252 Ga0209437_100647
253 Ga0209673_1002219
254 Ga0209130_1002036
255 Ga0209130_1003177
256 Ga0209130_1005635
257 Ga0209130_1005965
258 Ga0209675_1000755
259 Ga0209676_1000663
260 Ga0209676_1000898
261 Ga0209025_1000273
262 Ga0209025_1000698
263 Ga0209025_1000774
264 Ga0209025_1000931
265 Ga0209025_1001536
266 Ga0209025_1003156
267 Ga0209025_1003227
268 Ga0209025_1003279
269 Ga0209025_1003317
270 Ga0209025_1003565
271 Ga0209025_1004497
272 Ga0209025_1005713
273 Ga0209025_1007292
274 Ga0209025_1009098
275 Ga0207696_1004430
276 Ga0207696_1008845
277 Ga0207696_1010300
278 Ga0207655_1004913
279 Ga0207713_1004887
280 Ga0207713_1016053
281 Ga0210000_1003017
282 Ga0237817_10013
283 Ga0237817_10055
284 Ga0439433_0000862
285 Ga0451576_0001053
286 Ga0466967_0110515
287 Ga0495603_0014881
288 Ga0495603_0027858
289 Ga0495649_0042362
290 Ga0495683_0058584
291 Ga0496100_0000416
292 Ga0496101_0001563
293 Ga0496102_0020338
294 Ga0496102_0037311
295 Ga0496103_0004693
296 Ga0496103_0011311
297 Ga0496104_0012987
298 Ga0496107_0026913
299 Ga0496109_0001286
300 Ga0496110_0013888
301 Ga0496111_0006817
302 Ga0496112_0001302
303 Ga0496113_0023724
304 Ga0496116_0029708
305 Ga0496116_0045853
306 Ga0496116_0050985
307 Ga0496116_0093022
308 Ga0496119_0005014
309 Ga0496119_0012295
310 Ga0496119_0068135
311 Ga0496120_0001765
312 Ga0496121_0041520
313 Ga0496122_0002431
314 Ga0496122_0008755
315 Ga0496122_0025892
316 Ga0496122_0058477
317 Ga0496122_0062246
318 Ga0496123_0019427
319 Ga0496124_0000207
320 Ga0496124_0000826
321 Ga0496124_0065828
322 Ga0496125_0001122
323 Ga0496125_0001304
324 Ga0496125_0094054
325 Ga0496126_0002760
326 Ga0496126_0004419
327 Ga0496126_0020313
328 Ga0501208_000123
329 2512639691
330 2512732271
331 2553391523
332 2571527164
333 2587744119
334 2595089218
335 2595090836
336 2601637962
337 2643736391
338 2644424154
339 2644719206
340 2644722387
341 2672337645
342 2673821326
343 2685149540
344 2698323640
345 2705997507
346 2721506325
347 2723602113
348 2728535071
349 2730138179
350 2738813283
351 2738839900
352 2739232895
353 2739268520
354 2739270617
355 2753812353
356 2757564973
357 2757568579
358 2777763580
359 2777764054
360 2777835795
361 2777839618
362 2791215389
363 2793185454
364 2802439918
365 2816861969
366 2819571106
367 2819629102
368 2819671661
369 2819673721
370 2819707889
371 2821113220
372 2842686753
373 2842885145
374 2849141701
375 2852675199
376 2857456003
377 2857476023
378 2857583847
379 2857588548
380 2857589233
381 2857592398
382 2857605781
383 2857612173
384 2864738995
385 2865003069
386 2885529740
387 2889045276
388 2889050091
389 2889278182
390 2904165016
391 2904492150
392 2904527583
393 2904598111
394 2904610612
395 2904756716
396 2915600909
397 2919143772
398 2919161379
399 2919416444
400 2919416619
401 2919428240
402 2919520692
403 2919724586
404 2928097381
405 2928512046
406 2929004527
407 2929186054
408 2929234817
409 2931388709
410 2936342089
411 2936343578
412 2936364061
413 2938649262
414 2938918990
415 2939596413
416 2939682805
417 2939707339
418 2945992714
419 2946055466
420 2947428361
421 2956897359
422 2960319411
423 2960381671
424 2965764324
425 2968562179
426 2971406576
427 2971416334
428 2977259507
429 2988228064
430 2990275372
431 2996633503
432 2996706910
433 3001892910
434 3006829174
435 3006979812
436 3006984720
437 648168617
438 8022794605
439 8022794991
440 8022893706
441 8022915973
442 8023442328
443 8023448077
444 8054468485
445 8054801693
446 8055536550
447 8057584447

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17770

RNase_J_C

Ribonuclease J C-terminal domain

481

582

0.99

PF22505

RNase_J_b_CASP

Ribonuclease J, beta-CASP domain

250

375

0.99

PF07521

RMMBL

Zn-dependent metallo-hydrolase RNA specificity domain

383

443

0.89

PF12706

Lactamase_B_2

Beta-lactamase superfamily domain

58

210

0.83

PF00753

Lactamase_B

Metallo-beta-lactamase superfamily

43

217

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
5a0v-assembly2.cif.gz_B catalysis and 5' end sensing by ribonuclease rnase j of the metallo- beta-lactamase family 0.9731 6 444
6k6s-assembly1.cif.gz_B structure of rnase j1 from staphylococcus epidermidis 0.9729 5 445
6k6s-assembly1.cif.gz_B structure of rnase j1 from staphylococcus epidermidis 0.9642 5 445
6k6w-assembly1.cif.gz_A structure of rnase j2 from staphylococcus epidermidis 0.9446 4 443
5a0v-assembly2.cif.gz_B catalysis and 5' end sensing by ribonuclease rnase j of the metallo- beta-lactamase family 0.937 6 444
ID Description Score Start End Superfamily
3zq4C02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Metallo-hydrolase/oxidoreductase 0.9827 206 356 3.40.50.10710
5a0tB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Metallo-hydrolase/oxidoreductase 0.9779 207 355 3.40.50.10710
3zq4C02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Metallo-hydrolase/oxidoreductase 0.9763 206 356 3.40.50.10710
5a0tB01 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9638 6 444 3.60.15.10
3zq4E01 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9636 5 449 3.60.15.10
ID Description Score Start End GO Terms
AF-A0A4U3B2E3-F1-model_v4 Ribonuclease J 0.9926 46 359 GO:0003723
GO:0004527
AF-A0A6I4XKH1-F1-model_v4 MBL fold metallo-hydrolase 0.99 53 180 GO:0016787
AF-A0A7C4IMC6-F1-model_v4 MBL fold metallo-hydrolase 0.9867 24 117 GO:0016787
AF-A0A4U3B2E3-F1-model_v4 Ribonuclease J 0.9864 46 359 GO:0003723
GO:0004527
AF-A0A2G0E6H4-F1-model_v4 Ribonuclease J 0.9855 37 200

Map