F335575

General Info

Members Datasets Scaffolds Average Seq Length
223 170 175 282

Family's Representative Sequence

Representative Sequence 3300009553|Ga0105249_10079485|Ga0105249_100794852
Length 336
Sequence MSVAYLNGRFVPLAEAQISVLDRGFLFADGIYEVAAVIEGKLIDSGAHLARLERSTDAIGISLPLSLAQIEAAQKELVARNDLTEGLVYLQITRGADVTRDFLPSPDIQPTLVMFVQAKPFLDAPAARNGIAVATVPDLRWARRDIKSIGLLAQAIAKRAAADAGAQEAWMVEDGHVTEGASSTAFILTDEGIITRPYSQAVLAGCTGAALTALAEESGIAVIRRPFTVAEALTAREAFITSASTLCQSVVRIDGQPIRDGTPGPVAMRLRALYIDFARRTVVGRFANAQNPIHFGWIVTSPLFPPFRRLRTLHFVIADGQASILTGCKRKFASTG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
3 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
4 2534681786 Brucella suis 92/29 Isolate Unclassified
5 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
6 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
7 2643221558 Rhizobium sp. Root149 Isolate Unclassified
8 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
9 2738541317 Rhizobium halophytocola DSM 21600 Isolate Unclassified
10 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
11 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
12 2775507255 Sphingobium indicum B90A Isolate Rhizosphere
13 2791355262 Rhizobium sp. M1 Isolate Nodule
14 2808606401 Sphingobium sp. AEW010 Isolate Rhizosphere
15 2808606404 Sphingobium sp. AEW013 Isolate Rhizosphere
16 2808606405 Sphingobium sp. AEW001 Isolate Rhizosphere
17 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
18 2847686936 Mesorhizobium sp. M1A.F.Ca.IN.022.06.1.1 Isolate Nodule
19 2854911287 Brucella lupini LUP21 Isolate Unclassified
20 2871444079 Mesorhizobium sp. M1A.F.Ca.IN.020.06.1.1 Isolate Nodule
21 2874102143 Mesorhizobium sp. M1A.F.Ca.IN.022.04.1.1 Isolate Nodule
22 2880518877 Sphingobium sp. JAI105 Isolate Rhizosphere
23 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
24 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
25 2902330777 Methylobacterium sp. 2A Isolate Unclassified
26 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
27 2906328253 Mesorhizobium sp. M1A.T.Ca.IN.004.03.1.1 Isolate Nodule
28 2913308742 Rhizobium halophytocola DSM 21600 Isolate Unclassified
29 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
30 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
31 2924726620 Mesorhizobium sp. M1A.F.Ca.IN.020.03.2.1 Isolate Nodule
32 2924754689 Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1 Isolate Nodule
33 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
34 2937891427 Mesorhizobium sp. M1A.F.Ca.IN.022.07.1.1 Isolate Nodule
35 2958115193 Mesorhizobium sp. M00.F.Ca.ET.217.01.1.1 Isolate Nodule
36 2968091066 Mesorhizobium sp. AA23 Isolate Unclassified
37 2968097103 Mesorhizobium sp. M1A.F.Ca.IN.020.30.1.1 Isolate Nodule
38 2977858184 Mesorhizobium sp. M1A.F.Ca.IN.020.03.1.1 Isolate Nodule
39 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
40 2979779861 Mesorhizobium sp. M1A.F.Ca.IN.022.02.1.1 Isolate Nodule
41 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
42 2996341866 Mesorhizobium sp. M1A.F.Ca.IN.020.32.1.1 Isolate Nodule
43 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
44 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
45 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
46 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
47 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
48 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
49 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
50 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
51 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
52 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
53 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
54 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
55 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
56 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
57 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
58 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
59 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
60 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
61 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
62 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
63 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
64 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
65 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
66 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
67 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
68 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
69 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
70 3300009978 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG Metagenome Rhizosphere
71 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
72 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
73 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
74 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
75 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
94 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
95 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
96 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
97 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
98 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
101 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
102 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
103 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
104 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
105 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
106 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
107 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
108 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
109 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
110 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
111 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
112 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
113 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
114 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
115 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
116 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
117 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
118 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
119 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
120 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
121 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
122 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
123 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
124 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
125 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
126 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
127 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
128 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
129 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
130 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
131 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
132 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
133 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
134 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
135 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
136 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
137 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
138 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
139 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
140 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
141 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
142 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
143 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
144 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
145 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
146 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
147 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
148 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
149 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
150 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
151 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
152 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
153 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
154 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
155 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
156 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
157 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
158 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
159 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
160 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
161 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
162 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
163 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
164 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
165 641522639 Methylobacterium sp. 4-46 Isolate Nodule
166 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
167 8004445564 Mesorhizobium sp. M1A.F.Ca.IN.020.04.1.1 Isolate Nodule
168 8004703790 Mesorhizobium sp. M00.F.Ca.ET.158.01.1.1 Isolate Nodule
169 8054558443 Rhizobium alarense TRM95111 Isolate Nodule
170 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.48
Metatranscriptomes 0
Isolates 21.52

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.07
Nodule 8.97
Rhizoplane 3.59
Rhizosphere 58.74
Stem 0
Stem Tuber 0
Unclassified 20.63

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1219216 2162886007 Bacteria 1218
2 JGI24741J21665_1000106 3300001915 Bacteria 22073
3 JGI24740J21852_10002061 3300001979 Bacteria 9192
4 JGI24739J22299_10008798 3300001989 Bacteria 3765
5 JGI24737J22298_10005414 3300001990 Bacteria 4410
6 JGI24735J21928_10004390 3300002067 Bacteria 4746
7 JGI24738J21930_10006388 3300002075 Bacteria 2768
8 Ga0055532_1003905 3300003758 Bacteria 2389
9 Ga0058692_1000083 3300003856 Bacteria 66222
10 Ga0065704_10004656 3300005289 Bacteria 7648
11 Ga0070670_100074743 3300005331 Bacteria 2911
12 Ga0070668_100006150 3300005347 Bacteria 8894
13 Ga0070669_100073309 3300005353 Bacteria 2536
14 Ga0070671_100123024 3300005355 Bacteria 2184
15 Ga0070659_100017330 3300005366 Bacteria 5418
16 Ga0070663_100176976 3300005455 Bacteria 1652
17 Ga0070665_100051648 3300005548 Bacteria 4123
18 Ga0070664_100107310 3300005564 Bacteria 2434
19 Ga0068856_100006686 3300005614 Bacteria 11305
20 Ga0068852_100255486 3300005616 Bacteria 1680
21 Ga0075368_10026970 3300006042 Bacteria 2212
22 Ga0075363_100000900 3300006048 Bacteria 10469
23 Ga0075364_10000079 3300006051 Bacteria 38046
24 Ga0075367_10000265 3300006178 Bacteria 17990
25 Ga0105251_10003069 3300009011 Bacteria 12415
26 Ga0105237_10000615 3300009545 Bacteria 49660
27 Ga0105249_10079485 3300009553 Bacteria 3044
28 Ga0105148_100080 3300009978 Bacteria 14853
29 Ga0105239_10283371 3300010375 Bacteria 1866
30 Ga0157373_10030812 3300013100 Bacteria 3859
31 Ga0157369_10464985 3300013105 Bacteria 1310
32 Ga0157372_10414289 3300013307 Bacteria 1570
33 Ga0209147_102011 3300025229 Bacteria 5874
34 Ga0207713_1040196 3300025735 Bacteria 1965
35 Ga0207647_10003870 3300025904 Bacteria 11195
36 Ga0207654_10402676 3300025911 Bacteria 952
37 Ga0207671_10144281 3300025914 Bacteria 1836
38 Ga0207657_10015730 3300025919 Bacteria 7316
39 Ga0207681_10053535 3300025923 Bacteria 2740
40 Ga0207694_10003284 3300025924 Bacteria 12878
41 Ga0207690_10107205 3300025932 Bacteria 2006
42 Ga0207706_10005092 3300025933 Bacteria 12272
43 Ga0207679_10255301 3300025945 Bacteria 1492
44 Ga0207667_10318159 3300025949 Bacteria 1589
45 Ga0207668_10010846 3300025972 Bacteria 5520
46 Ga0207639_10000760 3300026041 Bacteria 21963
47 Ga0207678_10000083 3300026067 Bacteria 77023
48 Ga0207702_10004856 3300026078 Bacteria 11839
49 Ga0207674_10021779 3300026116 Bacteria 6898
50 Ga0207674_10240655 3300026116 Bacteria 1757
51 Ga0207698_10012824 3300026142 Bacteria 5505
52 Ga0209813_10000011 3300027866 Bacteria 93114
53 Ga0307413_10066006 3300031824 Bacteria 2256
54 Ga0307410_10031435 3300031852 Bacteria 3406
55 Ga0307412_10084244 3300031911 Bacteria 2206
56 Ga0307409_100575566 3300031995 Bacteria 1109
57 Ga0307416_100048587 3300032002 Bacteria 3367
58 Ga0307411_10131727 3300032005 Bacteria 1828
59 Ga0395900_0274367 3300037418 Bacteria 1680
60 Ga0400483_043849 3300039062 Bacteria 1477
61 Ga0400483_074041 3300039062 Bacteria 2335
62 Ga0400483_102734 3300039062 Bacteria 2093
63 Ga0400483_223311 3300039062 Bacteria 3181
64 Ga0451833_0680379 3300041491 Bacteria 2277
65 Ga0451837_0054548 3300041494 Bacteria 1279
66 Ga0451839_0014399 3300041496 Bacteria 2240
67 Ga0451841_1222541 3300041498 Bacteria 1289
68 Ga0451849_0784190 3300041505 Bacteria 1405
69 Ga0451843_0031628 3300041509 Bacteria 4339
70 Ga0451853_1592986 3300041512 Bacteria 2505
71 Ga0466960_0026922 3300044901 Bacteria 2617
72 Ga0495617_006905 3300046452 Bacteria 3964
73 Ga0495617_014404 3300046452 Bacteria 2688
74 Ga0495627_000024 3300046453 Bacteria 250480
75 Ga0495627_000032 3300046453 Bacteria 224665
76 Ga0495627_000164 3300046453 Bacteria 75744
77 Ga0495627_010376 3300046453 Bacteria 3389
78 Ga0495591_000018 3300046458 Bacteria 232216
79 Ga0495605_0000052 3300046474 Bacteria 162723
80 Ga0495605_0000522 3300046474 Bacteria 32534
81 Ga0495605_0122775 3300046474 Bacteria 1176
82 Ga0495584_0009468 3300046491 Bacteria 5017
83 Ga0495585_0205392 3300046492 Bacteria 1001
84 Ga0495607_0000013 3300046501 Bacteria 189755
85 Ga0495607_0000032 3300046501 Bacteria 153288
86 Ga0495607_0007812 3300046501 Bacteria 7364
87 Ga0495607_0065765 3300046501 Bacteria 2043
88 Ga0495583_0000218 3300046506 Bacteria 96349
89 Ga0495583_0000747 3300046506 Bacteria 41311
90 Ga0495606_0090773 3300046507 Bacteria 1880
91 Ga0495610_0000053 3300046512 Bacteria 142545
92 Ga0495610_0011440 3300046512 Bacteria 5426
93 Ga0495620_0000634 3300046515 Bacteria 21859
94 Ga0495631_0000912 3300046518 Bacteria 18377
95 Ga0495632_0000006 3300046519 Bacteria 345883
96 Ga0495632_0000158 3300046519 Bacteria 70148
97 Ga0495632_0005661 3300046519 Bacteria 8215
98 Ga0495632_0025564 3300046519 Bacteria 3121
99 Ga0495632_0034359 3300046519 Bacteria 2596
100 Ga0495637_0000143 3300046520 Bacteria 53795
101 Ga0495637_0000180 3300046520 Bacteria 49040
102 Ga0495637_0005555 3300046520 Bacteria 6401
103 Ga0495637_0005673 3300046520 Bacteria 6331
104 Ga0495637_0029731 3300046520 Bacteria 2429
105 Ga0495643_0000031 3300046522 Bacteria 257820
106 Ga0495648_0015887 3300046524 Bacteria 5442
107 Ga0495648_0052595 3300046524 Bacteria 2473
108 Ga0495663_0000008 3300046525 Bacteria 260614
109 Ga0495654_0000664 3300046530 Bacteria 27101
110 Ga0495654_0019118 3300046530 Bacteria 3583
111 Ga0495609_0000033 3300046538 Bacteria 208889
112 Ga0495597_0000013 3300046542 Bacteria 203829
113 Ga0495633_0000190 3300046558 Bacteria 79967
114 Ga0495633_0003296 3300046558 Bacteria 10852
115 Ga0495633_0024745 3300046558 Bacteria 2963
116 Ga0495668_0023552 3300046616 Bacteria 3509
117 Ga0495625_0060786 3300046660 Bacteria 2676
118 Ga0495661_0001793 3300046665 Bacteria 17257
119 Ga0495671_0000021 3300046692 Bacteria 257820
120 Ga0495671_0015756 3300046692 Bacteria 4044
121 Ga0495671_0029121 3300046692 Bacteria 2838
122 Ga0495660_0000703 3300046810 Bacteria 25661
123 Ga0495660_0001989 3300046810 Bacteria 13316
124 Ga0495660_0005143 3300046810 Bacteria 7861
125 Ga0495672_0001914 3300047320 Bacteria 19737
126 Ga0495672_0075403 3300047320 Bacteria 1897
127 Ga0495672_0079624 3300047320 Bacteria 1829
128 Ga0495673_0000490 3300047469 Bacteria 42198
129 Ga0495673_0000538 3300047469 Bacteria 39158
130 Ga0495673_0012223 3300047469 Bacteria 4567
131 Ga0495681_0000015 3300047470 Bacteria 183538
132 Ga0495681_0013221 3300047470 Bacteria 4803
133 Ga0495686_0000445 3300047472 Bacteria 62655
134 Ga0496108_0001497 3300048911 Bacteria 18476
135 Ga0496108_0018166 3300048911 Bacteria 5756
136 Ga0496109_0116450 3300048912 Bacteria 2487
137 Ga0496109_0266521 3300048912 Bacteria 1614
138 Ga0496110_0021169 3300048913 Bacteria 5499
139 Ga0496110_0026959 3300048913 Bacteria 4922
140 Ga0496110_0445651 3300048913 Bacteria 1180
141 Ga0496111_0227541 3300048914 Bacteria 1385
142 Ga0496117_0042750 3300048920 Bacteria 3304
143 Ga0496117_0058347 3300048920 Bacteria 2674
144 Ga0496118_0018327 3300048921 Bacteria 6321
145 Ga0496118_0065190 3300048921 Bacteria 2667
146 Ga0496121_0001604 3300048924 Bacteria 37523
147 Ga0496121_0008215 3300048924 Bacteria 12368
148 Ga0496121_0058341 3300048924 Bacteria 3192
149 Ga0496121_0153335 3300048924 Bacteria 1693
150 Ga0496122_0031627 3300048925 Bacteria 4398
151 Ga0496123_0016912 3300048926 Bacteria 5893
152 Ga0496124_0055311 3300048927 Bacteria 3354
153 Ga0496124_0074364 3300048927 Bacteria 2809
154 Ga0496124_0100349 3300048927 Bacteria 2346
155 Ga0496124_0134203 3300048927 Bacteria 1962
156 Ga0496125_0021511 3300048928 Bacteria 6015
157 Ga0496125_0066453 3300048928 Bacteria 2849
158 Ga0496125_0104181 3300048928 Bacteria 2079
159 Ga0496126_0010403 3300048929 Bacteria 9755
160 Ga0495678_000382 3300049459 Bacteria 44896
161 Ga0495678_021981 3300049459 Bacteria 2798
162 Ga0501223_000041 3300049663 Bacteria 44520
163 Ga0501225_0000056 3300049705 Bacteria 38609
164 Ga0501225_0010536 3300049705 Bacteria 2618
165 nmdc:mga03n38_11246_c1 3300050490 Bacteria 3326
166 nmdc:mga00v17_440_c1 3300050491 Bacteria 22734
167 nmdc:mga06z11_35_c1 3300050494 Bacteria 55939
168 nmdc:mga04h51_25_c1 3300050495 Bacteria 58532
169 Ga0500555_000446 3300053103 Bacteria 17119
170 Ga0500562_001550 3300053108 Bacteria 5691
171 Ga0500608_027395 3300053122 Bacteria 2686
172 Ga0500618_000749 3300053125 Bacteria 18445
173 Ga0500618_022295 3300053125 Bacteria 1539
174 Ga0500573_0026785 3300053140 Bacteria 3314
175 Ga0500624_000028 3300053157 Bacteria 106675

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037418 Ga0395900_0274367 Ga0395900_0274367_766_1623 255
2 3300048928 Ga0496125_0104181 Ga0496125_0104181_793_1656 271
3 3300006051 Ga0075364_10000079 Ga0075364_100000791 273
4 3300050491 nmdc:mga00v17_440_c1 nmdc:mga00v17_440_c1_11637_12497 273
5 3300005366 Ga0070659_100017330 Ga0070659_1000173302 274
6 3300031824 Ga0307413_10066006 Ga0307413_100660061 274
7 3300032002 Ga0307416_100048587 Ga0307416_1000485872 274
8 3300039062 Ga0400483_074041 Ga0400483_074041_1106_1963 274
9 3300046515 Ga0495620_0000634 Ga0495620_0000634_18592_19446 274
10 3300046520 Ga0495637_0005555 Ga0495637_0005555_4341_5195 274
11 3300047469 Ga0495673_0000490 Ga0495673_0000490_3251_4105 274
12 3300001915 JGI24741J21665_1000106 JGI24741J21665_10001063 275
13 3300001979 JGI24740J21852_10002061 JGI24740J21852_100020616 275
14 3300001989 JGI24739J22299_10008798 JGI24739J22299_100087982 275
15 3300001990 JGI24737J22298_10005414 JGI24737J22298_100054143 275
16 3300002067 JGI24735J21928_10004390 JGI24735J21928_100043902 275
17 3300002075 JGI24738J21930_10006388 JGI24738J21930_100063881 275
18 3300005455 Ga0070663_100176976 Ga0070663_1001769761 275
19 3300005564 Ga0070664_100107310 Ga0070664_1001073102 275
20 3300005616 Ga0068852_100255486 Ga0068852_1002554861 275
21 3300010375 Ga0105239_10283371 Ga0105239_102833712 275
22 3300013100 Ga0157373_10030812 Ga0157373_100308123 275
23 3300013307 Ga0157372_10414289 Ga0157372_104142891 275
24 3300025904 Ga0207647_10003870 Ga0207647_100038703 275
25 3300025911 Ga0207654_10402676 Ga0207654_104026761 275
26 3300025914 Ga0207671_10144281 Ga0207671_101442811 275
27 3300025919 Ga0207657_10015730 Ga0207657_100157303 275
28 3300025924 Ga0207694_10003284 Ga0207694_100032849 275
29 3300025932 Ga0207690_10107205 Ga0207690_101072052 275
30 3300025933 Ga0207706_10005092 Ga0207706_100050924 275
31 3300025945 Ga0207679_10255301 Ga0207679_102553011 275
32 3300026041 Ga0207639_10000760 Ga0207639_100007606 275
33 3300026067 Ga0207678_10000083 Ga0207678_1000008364 275
34 3300026116 Ga0207674_10021779 Ga0207674_100217794 275
35 3300026142 Ga0207698_10012824 Ga0207698_100128241 275
36 3300031852 Ga0307410_10031435 Ga0307410_100314352 275
37 3300031911 Ga0307412_10084244 Ga0307412_100842441 275
38 3300031995 Ga0307409_100575566 Ga0307409_1005755661 275
39 3300032005 Ga0307411_10131727 Ga0307411_101317272 275
40 iso_pu_bacteria 2842698319 2842701124 275
41 3300048924 Ga0496121_0008215 Ga0496121_0008215_1451_2365 276
42 iso_pu_bacteria 2545555834 2545677665 276
43 iso_pu_bacteria 641522639 641646924 276
44 iso_pu_bacteria 643348564 643605133 276
45 iso_pu_bacteria 3003665799 3003666841 277
46 iso_pu_bacteria 2791355262 2793337125 278
47 iso_pu_bacteria 2847686936 2847688448 278
48 iso_pu_bacteria 2871444079 2871445429 278
49 iso_pu_bacteria 2874102143 2874102225 278
50 iso_pu_bacteria 2906328253 2906331611 278
51 iso_pu_bacteria 2924726620 2924728504 278
52 iso_pu_bacteria 2924754689 2924760648 278
53 iso_pu_bacteria 2937891427 2937895022 278
54 iso_pu_bacteria 2958115193 2958115776 278
55 iso_pu_bacteria 2968091066 2968095591 278
56 iso_pu_bacteria 2968097103 2968100174 278
57 iso_pu_bacteria 2977858184 2977860158 278
58 iso_pu_bacteria 2979779861 2979782115 278
59 iso_pu_bacteria 2996341866 2996347462 278
60 iso_pu_bacteria 8004445564 8004449533 278
61 iso_pu_bacteria 8004703790 8004704015 278
62 iso_pu_bacteria 8054558443 8054560406 278
63 iso_pu_bacteria 2512564014 2512643695 279
64 iso_pu_bacteria 2513237144 2513909320 279
65 iso_pu_bacteria 2595698237 2596373881 279
66 iso_pu_bacteria 2643221558 2643814542 279
67 iso_pu_bacteria 2738541317 2738946875 279
68 iso_pu_bacteria 2775507255 2778125291 279
69 iso_pu_bacteria 2808606401 2809062651 279
70 iso_pu_bacteria 2808606404 2809078665 279
71 iso_pu_bacteria 2808606405 2809083040 279
72 iso_pu_bacteria 2880518877 2880521543 279
73 iso_pu_bacteria 2889306138 2889307977 279
74 iso_pu_bacteria 2902330777 2902335965 279
75 iso_pu_bacteria 2902405164 2902407798 279
76 iso_pu_bacteria 2913308742 2913311765 279
77 iso_pu_bacteria 2919709256 2919709326 279
78 iso_pu_bacteria 2928125067 2928129519 279
79 iso_pu_bacteria 2978969890 2978970047 279
80 iso_pu_bacteria 8056875544 8056879077 279
81 3300026116 Ga0207674_10240655 Ga0207674_102406552 280
82 3300046506 Ga0495583_0000218 Ga0495583_0000218_59483_60337 280
83 3300046507 Ga0495606_0090773 Ga0495606_0090773_776_1630 280
84 3300047472 Ga0495686_0000445 Ga0495686_0000445_21235_22089 280
85 3300048920 Ga0496117_0042750 Ga0496117_0042750_1534_2388 280
86 3300048921 Ga0496118_0018327 Ga0496118_0018327_289_1143 280
87 3300053103 Ga0500555_000446 Ga0500555_000446_9862_10716 280
88 3300053125 Ga0500618_022295 Ga0500618_022295_252_1106 280
89 iso_pu_bacteria 2738541281 2738745341 280
90 iso_pu_bacteria 2738543032 2739354571 280
91 iso_pu_bacteria 2891048133 2891048363 280
92 iso_pu_bacteria 2995392953 2995394204 280
93 3300003856 Ga0058692_1000083 Ga0058692_100008330 282
94 3300009545 Ga0105237_10000615 Ga0105237_1000061527 282
95 3300039062 Ga0400483_043849 Ga0400483_043849_183_1037 282
96 3300039062 Ga0400483_102734 Ga0400483_102734_1029_1883 282
97 3300039062 Ga0400483_223311 Ga0400483_223311_1912_2766 282
98 3300041491 Ga0451833_0680379 Ga0451833_0680379_162_1016 282
99 3300041494 Ga0451837_0054548 Ga0451837_0054548_206_1060 282
100 3300041496 Ga0451839_0014399 Ga0451839_0014399_244_1098 282
101 3300041498 Ga0451841_1222541 Ga0451841_1222541_155_1009 282
102 3300041505 Ga0451849_0784190 Ga0451849_0784190_378_1232 282
103 3300041509 Ga0451843_0031628 Ga0451843_0031628_2170_3024 282
104 3300041512 Ga0451853_1592986 Ga0451853_1592986_1410_2264 282
105 3300044901 Ga0466960_0026922 Ga0466960_0026922_1584_2447 282
106 3300046452 Ga0495617_014404 Ga0495617_014404_1739_2593 282
107 3300046453 Ga0495627_000032 Ga0495627_000032_64913_65767 282
108 3300046453 Ga0495627_000164 Ga0495627_000164_49438_50292 282
109 3300046458 Ga0495591_000018 Ga0495591_000018_79928_80782 282
110 3300046474 Ga0495605_0000052 Ga0495605_0000052_63601_64455 282
111 3300046474 Ga0495605_0000522 Ga0495605_0000522_23883_24737 282
112 3300046474 Ga0495605_0122775 Ga0495605_0122775_55_909 282
113 3300046492 Ga0495585_0205392 Ga0495585_0205392_53_907 282
114 3300046501 Ga0495607_0000013 Ga0495607_0000013_124385_125239 282
115 3300046501 Ga0495607_0000032 Ga0495607_0000032_62446_63300 282
116 3300046501 Ga0495607_0007812 Ga0495607_0007812_4405_5259 282
117 3300046501 Ga0495607_0065765 Ga0495607_0065765_1008_1862 282
118 3300046506 Ga0495583_0000747 Ga0495583_0000747_13450_14304 282
119 3300046518 Ga0495631_0000912 Ga0495631_0000912_8299_9153 282
120 3300046519 Ga0495632_0000158 Ga0495632_0000158_53455_54309 282
121 3300046519 Ga0495632_0005661 Ga0495632_0005661_6869_7723 282
122 3300046519 Ga0495632_0025564 Ga0495632_0025564_355_1209 282
123 3300046520 Ga0495637_0000143 Ga0495637_0000143_17237_18091 282
124 3300046520 Ga0495637_0029731 Ga0495637_0029731_571_1425 282
125 3300046530 Ga0495654_0000664 Ga0495654_0000664_43_897 282
126 3300046530 Ga0495654_0019118 Ga0495654_0019118_948_1802 282
127 3300046538 Ga0495609_0000033 Ga0495609_0000033_156797_157651 282
128 3300046542 Ga0495597_0000013 Ga0495597_0000013_69679_70533 282
129 3300046616 Ga0495668_0023552 Ga0495668_0023552_825_1679 282
130 3300046665 Ga0495661_0001793 Ga0495661_0001793_15945_16799 282
131 3300046692 Ga0495671_0015756 Ga0495671_0015756_154_1008 282
132 3300046692 Ga0495671_0029121 Ga0495671_0029121_1622_2476 282
133 3300046810 Ga0495660_0000703 Ga0495660_0000703_13969_14823 282
134 3300046810 Ga0495660_0001989 Ga0495660_0001989_10808_11662 282
135 3300046810 Ga0495660_0005143 Ga0495660_0005143_77_931 282
136 3300047320 Ga0495672_0001914 Ga0495672_0001914_14467_15321 282
137 3300047320 Ga0495672_0079624 Ga0495672_0079624_63_917 282
138 3300047469 Ga0495673_0000538 Ga0495673_0000538_23338_24192 282
139 3300047469 Ga0495673_0012223 Ga0495673_0012223_1559_2413 282
140 3300048924 Ga0496121_0153335 Ga0496121_0153335_110_964 282
141 3300049459 Ga0495678_000382 Ga0495678_000382_26933_27787 282
142 3300053122 Ga0500608_027395 Ga0500608_027395_1065_1919 282
143 3300053125 Ga0500618_000749 Ga0500618_000749_8539_9393 282
144 3300053140 Ga0500573_0026785 Ga0500573_0026785_1009_1863 282
145 2162886007 SwRhRL2b_contig_1219216 SwRhRL2b_0571.00006490 283
146 3300003758 Ga0055532_1003905 Ga0055532_10039052 283
147 3300005289 Ga0065704_10004656 Ga0065704_100046564 283
148 3300005331 Ga0070670_100074743 Ga0070670_1000747432 283
149 3300005347 Ga0070668_100006150 Ga0070668_1000061507 283
150 3300005353 Ga0070669_100073309 Ga0070669_1000733092 283
151 3300005355 Ga0070671_100123024 Ga0070671_1001230241 283
152 3300005548 Ga0070665_100051648 Ga0070665_1000516482 283
153 3300005614 Ga0068856_100006686 Ga0068856_1000066865 283
154 3300006042 Ga0075368_10026970 Ga0075368_100269701 283
155 3300006048 Ga0075363_100000900 Ga0075363_1000009008 283
156 3300006178 Ga0075367_10000265 Ga0075367_1000026519 283
157 3300009011 Ga0105251_10003069 Ga0105251_100030692 283
158 3300009553 Ga0105249_10079485 Ga0105249_100794852 283
159 3300009978 Ga0105148_100080 Ga0105148_1000804 283
160 3300013105 Ga0157369_10464985 Ga0157369_104649852 283
161 3300025229 Ga0209147_102011 Ga0209147_1020115 283
162 3300025735 Ga0207713_1040196 Ga0207713_10401962 283
163 3300025923 Ga0207681_10053535 Ga0207681_100535352 283
164 3300025949 Ga0207667_10318159 Ga0207667_103181591 283
165 3300025972 Ga0207668_10010846 Ga0207668_100108462 283
166 3300026078 Ga0207702_10004856 Ga0207702_100048567 283
167 3300027866 Ga0209813_10000011 Ga0209813_100000116 283
168 3300046452 Ga0495617_006905 Ga0495617_006905_1768_2622 283
169 3300046453 Ga0495627_000024 Ga0495627_000024_195890_196744 283
170 3300046453 Ga0495627_010376 Ga0495627_010376_1590_2444 283
171 3300046491 Ga0495584_0009468 Ga0495584_0009468_2318_3169 283
172 3300046512 Ga0495610_0000053 Ga0495610_0000053_3051_3905 283
173 3300046512 Ga0495610_0011440 Ga0495610_0011440_2686_3549 283
174 3300046519 Ga0495632_0000006 Ga0495632_0000006_1885_2736 283
175 3300046519 Ga0495632_0034359 Ga0495632_0034359_691_1542 283
176 3300046520 Ga0495637_0000180 Ga0495637_0000180_5526_6377 283
177 3300046520 Ga0495637_0005673 Ga0495637_0005673_4248_5099 283
178 3300046522 Ga0495643_0000031 Ga0495643_0000031_36165_37016 283
179 3300046524 Ga0495648_0015887 Ga0495648_0015887_4219_5073 283
180 3300046524 Ga0495648_0052595 Ga0495648_0052595_1573_2424 283
181 3300046525 Ga0495663_0000008 Ga0495663_0000008_257879_258730 283
182 3300046558 Ga0495633_0000190 Ga0495633_0000190_47965_48816 283
183 3300046558 Ga0495633_0003296 Ga0495633_0003296_8117_8968 283
184 3300046558 Ga0495633_0024745 Ga0495633_0024745_687_1538 283
185 3300046660 Ga0495625_0060786 Ga0495625_0060786_58_909 283
186 3300046692 Ga0495671_0000021 Ga0495671_0000021_220805_221656 283
187 3300047320 Ga0495672_0075403 Ga0495672_0075403_388_1239 283
188 3300047470 Ga0495681_0000015 Ga0495681_0000015_86920_87771 283
189 3300047470 Ga0495681_0013221 Ga0495681_0013221_3194_4045 283
190 3300048911 Ga0496108_0001497 Ga0496108_0001497_13191_14042 283
191 3300048911 Ga0496108_0018166 Ga0496108_0018166_2846_3766 283
192 3300048912 Ga0496109_0116450 Ga0496109_0116450_1431_2351 283
193 3300048912 Ga0496109_0266521 Ga0496109_0266521_606_1457 283
194 3300048913 Ga0496110_0021169 Ga0496110_0021169_2519_3439 283
195 3300048913 Ga0496110_0026959 Ga0496110_0026959_1289_2140 283
196 3300048913 Ga0496110_0445651 Ga0496110_0445651_78_929 283
197 3300048914 Ga0496111_0227541 Ga0496111_0227541_148_999 283
198 3300048920 Ga0496117_0058347 Ga0496117_0058347_1337_2188 283
199 3300048921 Ga0496118_0065190 Ga0496118_0065190_1111_1962 283
200 3300048924 Ga0496121_0001604 Ga0496121_0001604_12040_12891 283
201 3300048924 Ga0496121_0058341 Ga0496121_0058341_1488_2339 283
202 3300048925 Ga0496122_0031627 Ga0496122_0031627_1416_2267 283
203 3300048926 Ga0496123_0016912 Ga0496123_0016912_679_1530 283
204 3300048927 Ga0496124_0055311 Ga0496124_0055311_41_961 283
205 3300048927 Ga0496124_0074364 Ga0496124_0074364_710_1573 283
206 3300048927 Ga0496124_0100349 Ga0496124_0100349_588_1439 283
207 3300048927 Ga0496124_0134203 Ga0496124_0134203_658_1542 283
208 3300048928 Ga0496125_0021511 Ga0496125_0021511_1981_2832 283
209 3300048928 Ga0496125_0066453 Ga0496125_0066453_703_1554 283
210 3300048929 Ga0496126_0010403 Ga0496126_0010403_2131_2982 283
211 3300049459 Ga0495678_021981 Ga0495678_021981_1450_2301 283
212 3300049663 Ga0501223_000041 Ga0501223_000041_24395_25246 283
213 3300049705 Ga0501225_0000056 Ga0501225_0000056_24579_25430 283
214 3300049705 Ga0501225_0010536 Ga0501225_0010536_348_1199 283
215 3300050490 nmdc:mga03n38_11246_c1 nmdc:mga03n38_11246_c1_242_1093 283
216 3300050494 nmdc:mga06z11_35_c1 nmdc:mga06z11_35_c1_7446_8297 283
217 3300050495 nmdc:mga04h51_25_c1 nmdc:mga04h51_25_c1_52619_53470 283
218 3300053108 Ga0500562_001550 Ga0500562_001550_4356_5207 283
219 3300053157 Ga0500624_000028 Ga0500624_000028_60333_61184 283
220 iso_pu_bacteria 2534681786 2535486878 283
221 iso_pu_bacteria 2758568016 2758642305 283
222 iso_pu_bacteria 2854911287 2854912651 283
223 iso_pu_bacteria 2915650412 2915653371 283

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01063

Aminotran_4

Amino-transferase class IV

30

253

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5daa-assembly1.cif.gz_B e177k mutant of d-amino acid aminotransferase complexed with pyridoxamine-5'-phosphate 0.9616 3 276
2dab-assembly1.cif.gz_A l201a mutant of d-amino acid aminotransferase complexed with pyridoxal-5'-phosphate 0.9557 3 278
4daa-assembly1.cif.gz_A crystallographic structure of d-amino acid aminotransferase in pyridoxal-5'-phosphate (plp) form 0.9552 3 278
1g2w-assembly1.cif.gz_B e177s mutant of the pyridoxal-5'-phosphate enzyme d-amino acid aminotransferase 0.9531 3 278
4tm5-assembly1.cif.gz_A-2 x-ray crystal structure of a d-amino acid aminotransferase from burkholderia thailandensis e264 bound to the co-factor pyridoxal phosphate 0.9484 2 283
ID Description Score Start End Superfamily
3lqsA02 Alpha Beta;Alpha-Beta Barrel;D-amino Acid Aminotransferase; Chain A, domain 2;D-amino Acid Aminotransferase, subunit A, domain 2 0.9774 126 276 3.20.10.10
1a0gA01 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.9621 3 119 3.30.470.10
af_Q2FXI0_1_119_3.30.470.10 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.9573 1 119 3.30.470.10
4pbcB02 Alpha Beta;Alpha-Beta Barrel;D-amino Acid Aminotransferase; Chain A, domain 2;D-amino Acid Aminotransferase, subunit A, domain 2 0.9562 150 280 3.20.10.10
af_Q2FXI0_1_119_3.30.470.10 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.9495 1 119 3.30.470.10
ID Description Score Start End GO Terms
AF-A0A2N3BSV1-F1-model_v4 Probable branched-chain-amino-acid aminotransferase (EC 2.6.1.42) 0.9878 2 283 GO:0005829
GO:0008483
GO:0046394
AF-A0A4R3Z065-F1-model_v4 branched-chain-amino-acid transaminase (EC 2.6.1.42) 0.986 3 280 GO:0003824
GO:0005829
GO:0046394
AF-A0A424W4A8-F1-model_v4 branched-chain-amino-acid transaminase (EC 2.6.1.42) 0.9853 2 283 GO:0005829
GO:0046394
GO:0047810
AF-C4WKW4-F1-model_v4 Probable branched-chain-amino-acid aminotransferase (EC 2.6.1.42) 0.9845 3 283 GO:0005829
GO:0008483
GO:0046394
AF-A0A521LLH7-F1-model_v4 branched-chain-amino-acid transaminase (EC 2.6.1.42) 0.984 134 280 GO:0005829
GO:0046394
GO:0047810

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pLDDT pTM Quality
94.39 0.89 High
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Predicted Structure (AlphaFold2)

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