F333972

General Info

Members Datasets Scaffolds Average Seq Length
221 75 442 314

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8056533031|8056537555
Length 360
Sequence KGQLGKTCLFPISSPQDTIELPAQQQAQFRKGEHNMEERATGFHTGRNQRKPIWIKPKQSTFRNRLIRDRHLYLMLLPVIGFYLLFKYAPMVGEIIAFKDYRFADGIFGSNWVGFKHFTSLFQSIDFWRVLRNTLLLNVYSLVLGFPIPILLALLLNEVRKEWYKRTVQNLLYLPHFISWVVLGGIFIAMLSPSTGVVNLVLTKVFGIEPIYFMASSGWWPIAYTLSGIWREAGWGTILYLAAMASIDPQQYEAAKMDGASKLRQIWHITLPGIRSTIAILLVLRMGHMMDVGLEQTLVLQNMSVLDVADVISTYVYRVGLQNMNYSYTTALGLFQSAVGLILVVGVNRLTRVFGERGLW

Samples

Sample ID Description Type Environment
1 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
2 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
5 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
6 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
7 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
8 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
9 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
10 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
11 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
12 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
13 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
14 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
15 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
16 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
17 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
18 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
19 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
20 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
21 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
22 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
23 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
24 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
25 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
26 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
27 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
28 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
29 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
30 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
31 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
32 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
33 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
34 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
35 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
36 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
37 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
38 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
39 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
40 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
41 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
42 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
43 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
44 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
45 2671180694 Paenibacillus sp. A3 Isolate Unclassified
46 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
47 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
48 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
49 2818991459 Paenibacillus sp. 597 Isolate Unclassified
50 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
51 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
52 2857472729 Cohnella sp. R-74144 Isolate Unclassified
53 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
54 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
55 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
56 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
57 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
58 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
59 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
60 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
61 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
62 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
63 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
64 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
65 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
66 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
67 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
68 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
69 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
70 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
71 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
72 8054280661 Metabacillus kandeliae GX 13764 Isolate Rhizosphere
73 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
74 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
75 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 36.65
Metatranscriptomes 0.9
Isolates 62.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.24
Nodule 5.43
Rhizoplane 0.45
Rhizosphere 29.86
Stem 0
Stem Tuber 0
Unclassified 2.26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055541_1001025 3300003841 Bacteria 6514
2 Ga0055541_1001804 3300003841 Bacteria 4471
3 Ga0055541_1003049 3300003841 Bacteria 3217
4 Ga0055541_1004842 3300003841 Bacteria 2406
5 Ga0065165_1027635 3300005262 Bacteria 1845
6 Ga0070658_10141910 3300005327 Bacteria 2007
7 Ga0157371_10081021 3300013102 Bacteria 2298
8 Ga0157369_10036063 3300013105 Bacteria 5421
9 Ga0209784_100278 3300025224 Bacteria 29264
10 Ga0209566_100022 3300025225 Bacteria 403259
11 Ga0209566_100087 3300025225 Bacteria 144946
12 Ga0209566_100111 3300025225 Bacteria 111965
13 Ga0209566_100158 3300025225 Bacteria 76076
14 Ga0209566_100301 3300025225 Bacteria 44922
15 Ga0209566_103157 3300025225 Bacteria 2644
16 Ga0209675_1008745 3300025291 Bacteria 3670
17 Ga0209675_1008900 3300025291 Bacteria 3612
18 Ga0209025_1013644 3300025294 Bacteria 5083
19 Ga0209025_1020521 3300025294 Bacteria 3609
20 Ga0395899_0063150 3300037312 Bacteria 2725
21 Ga0439436_0002419 3300041404 Bacteria 5603
22 Ga0439439_0000186 3300041406 Bacteria 9395
23 Ga0439433_0002685 3300041999 Bacteria 3782
24 Ga0439433_0011556 3300041999 Bacteria 1935
25 Ga0439449_0000707 3300042007 Bacteria 12758
26 Ga0439449_0002185 3300042007 Bacteria 7688
27 Ga0439462_0012934 3300042015 Bacteria 2136
28 Ga0466969_0000574 3300044656 Bacteria 20045
29 Ga0451576_0197303 3300045051 Unclassified 2102
30 Ga0495590_0018665 3300046457 Bacteria 2482
31 Ga0495661_0068067 3300046665 Bacteria 2090
32 Ga0495660_0013728 3300046810 Bacteria 4694
33 Ga0495660_0032946 3300046810 Bacteria 2908
34 Ga0495660_0147668 3300046810 Bacteria 1164
35 Ga0495681_0085961 3300047470 Bacteria 1396
36 Ga0495626_0032462 3300048091 Bacteria 2507
37 Ga0496116_0001046 3300048919 Bacteria 33700
38 Ga0496116_0005153 3300048919 Bacteria 12270
39 Ga0496116_0011128 3300048919 Bacteria 7479
40 Ga0496116_0022891 3300048919 Bacteria 4665
41 Ga0496116_0029432 3300048919 Unclassified 3960
42 Ga0496116_0047475 3300048919 Bacteria 2890
43 Ga0496116_0051792 3300048919 Bacteria 2724
44 Ga0496116_0067672 3300048919 Bacteria 2280
45 Ga0496116_0089588 3300048919 Bacteria 1876
46 Ga0496116_0093280 3300048919 Bacteria 1823
47 Ga0496116_0147820 3300048919 Unclassified 1310
48 Ga0496116_0166740 3300048919 Bacteria 1200
49 Ga0496116_0168029 3300048919 Bacteria 1193
50 Ga0496117_0000611 3300048920 Bacteria 58053
51 Ga0496119_0000593 3300048922 Bacteria 49079
52 Ga0496119_0010549 3300048922 Bacteria 7757
53 Ga0496120_0000071 3300048923 Bacteria 164824
54 Ga0496120_0000118 3300048923 Bacteria 133435
55 Ga0496120_0006678 3300048923 Bacteria 8795
56 Ga0496120_0006849 3300048923 Bacteria 8622
57 Ga0496120_0078440 3300048923 Bacteria 1795
58 Ga0496121_0011896 3300048924 Bacteria 9581
59 Ga0496122_0000012 3300048925 Bacteria 526837
60 Ga0496122_0004532 3300048925 Bacteria 17138
61 Ga0496122_0004997 3300048925 Bacteria 16045
62 Ga0496122_0006959 3300048925 Bacteria 12741
63 Ga0496122_0008668 3300048925 Bacteria 10907
64 Ga0496122_0014884 3300048925 Bacteria 7490
65 Ga0496122_0018667 3300048925 Bacteria 6387
66 Ga0496122_0023912 3300048925 Bacteria 5365
67 Ga0496122_0050460 3300048925 Bacteria 3173
68 Ga0496122_0138604 3300048925 Unclassified 1527
69 Ga0496122_0188354 3300048925 Bacteria 1221
70 Ga0496123_0000611 3300048926 Bacteria 60146
71 Ga0496123_0003592 3300048926 Bacteria 17176
72 Ga0496123_0009185 3300048926 Bacteria 8936
73 Ga0496123_0097310 3300048926 Bacteria 1725
74 Ga0496124_0000839 3300048927 Bacteria 50125
75 Ga0496124_0162652 3300048927 Bacteria 1738
76 Ga0496125_0000365 3300048928 Bacteria 85350
77 Ga0496125_0002223 3300048928 Bacteria 25848
78 Ga0496125_0033504 3300048928 Unclassified 4545
79 Ga0496126_0000008 3300048929 Bacteria 781752
80 Ga0496126_0000353 3300048929 Bacteria 96361
81 Ga0501306_000134 3300049127 Bacteria 4517
82 Ga0501266_006021 3300049763 Bacteria 1507
83 Ga0587082_003453 3300059504 Bacteria 1900
84 8056537555 8056533031 Bacteria 8964429
85 2512729718 2512564039 Bacteria 8739048
86 2524187717 2524023129 Bacteria 6762600
87 2550899682 2548877040 Bacteria 7507281
88 2550901404 2548877040 Bacteria 7507281
89 2550903562 2548877040 Bacteria 7507281
90 2571533059 2571042143 Bacteria 6986194
91 2587739411 2585428059 Bacteria 8696589
92 2587741579 2585428059 Bacteria 8696589
93 2587742891 2585428059 Bacteria 8696589
94 2587743689 2585428059 Bacteria 8696589
95 2587744148 2585428059 Bacteria 8696589
96 2587745006 2585428059 Bacteria 8696589
97 2595316163 2593339198 Bacteria 7267884
98 2595317023 2593339198 Bacteria 7267884
99 2595318279 2593339198 Bacteria 7267884
100 2595318322 2593339198 Bacteria 7267884
101 2595318432 2593339198 Bacteria 7267884
102 2595318686 2593339198 Bacteria 7267884
103 2595318807 2593339198 Bacteria 7267884
104 2595320449 2593339198 Bacteria 7267884
105 2601637570 2600255286 Bacteria 5390125
106 2644424184 2643221676 Bacteria 8119172
107 2644424194 2643221676 Bacteria 8119172
108 2644424327 2643221676 Bacteria 8119172
109 2644425014 2643221676 Bacteria 8119172
110 2644425496 2643221676 Bacteria 8119172
111 2644426186 2643221676 Bacteria 8119172
112 2644426302 2643221676 Bacteria 8119172
113 2673820663 2671180694 Bacteria 7506943
114 2673822709 2671180694 Bacteria 7506943
115 2673822953 2671180694 Bacteria 7506943
116 2728532073 2728368933 Bacteria 7044283
117 2728533225 2728368933 Bacteria 7044283
118 2793183809 2791355222 Bacteria 5898266
119 2808892642 2808606370 Bacteria 4942454
120 2819669724 2818991459 Bacteria 8736032
121 2819669943 2818991459 Bacteria 8736032
122 2819670033 2818991459 Bacteria 8736032
123 2819671534 2818991459 Bacteria 8736032
124 2819671638 2818991459 Bacteria 8736032
125 2819674005 2818991459 Bacteria 8736032
126 2819675714 2818991459 Bacteria 8736032
127 2821117983 2821111986 Bacteria 6894338
128 2857453356 2857453340 Bacteria 8090534
129 2857454902 2857453340 Bacteria 8090534
130 2857456135 2857453340 Bacteria 8090534
131 2857456433 2857453340 Bacteria 8090534
132 2857457282 2857453340 Bacteria 8090534
133 2857457717 2857453340 Bacteria 8090534
134 2857457922 2857453340 Bacteria 8090534
135 2857459271 2857453340 Bacteria 8090534
136 2857459973 2857453340 Bacteria 8090534
137 2857476719 2857472729 Bacteria 6568124
138 2885529082 2885526491 Bacteria 7164189
139 2888583150 2888578766 Bacteria 6743310
140 2888583829 2888578766 Bacteria 6743310
141 2889053721 2889049205 Bacteria 7524325
142 2904115792 2904113452 Bacteria 7796941
143 2904117664 2904113452 Bacteria 7796941
144 2904118344 2904113452 Bacteria 7796941
145 2904167199 2904162308 Bacteria 7086713
146 2904755521 2904755435 Bacteria 7986759
147 2904756735 2904755435 Bacteria 7986759
148 2904758519 2904755435 Bacteria 7986759
149 2904760909 2904755435 Bacteria 7986759
150 2904761004 2904755435 Bacteria 7986759
151 2919426284 2919425241 Bacteria 8055701
152 2919426568 2919425241 Bacteria 8055701
153 2919427813 2919425241 Bacteria 8055701
154 2919427865 2919425241 Bacteria 8055701
155 2919428012 2919425241 Bacteria 8055701
156 2919428094 2919425241 Bacteria 8055701
157 2919428220 2919425241 Bacteria 8055701
158 2919430680 2919425241 Bacteria 8055701
159 2919432320 2919425241 Bacteria 8055701
160 2925330062 2925326138 Bacteria 9652120
161 2925330236 2925326138 Bacteria 9652120
162 2925331948 2925326138 Bacteria 9652120
163 2938654140 2938649242 Bacteria 7118381
164 2939684632 2939679117 Bacteria 6921672
165 2945991978 2945991243 Bacteria 7008369
166 2968563814 2968558590 Bacteria 6956864
167 2971408707 2971403814 Bacteria 7370929
168 2971408808 2971403814 Bacteria 7370929
169 2971410018 2971403814 Bacteria 7370929
170 2971410581 2971410472 Bacteria 8311090
171 2971410984 2971410472 Bacteria 8311090
172 2971411106 2971410472 Bacteria 8311090
173 2971411965 2971410472 Bacteria 8311090
174 2971413079 2971410472 Bacteria 8311090
175 2971414558 2971410472 Bacteria 8311090
176 2971416077 2971410472 Bacteria 8311090
177 2971416492 2971410472 Bacteria 8311090
178 2980183484 2980182181 Bacteria 9454109
179 2980183786 2980182181 Bacteria 9454109
180 2980185009 2980182181 Bacteria 9454109
181 2980185142 2980182181 Bacteria 9454109
182 2980185755 2980182181 Bacteria 9454109
183 2980185960 2980182181 Bacteria 9454109
184 2980186074 2980182181 Bacteria 9454109
185 2980186651 2980182181 Bacteria 9454109
186 2980186674 2980182181 Bacteria 9454109
187 2980188174 2980182181 Bacteria 9454109
188 2980188344 2980182181 Bacteria 9454109
189 2980188585 2980182181 Bacteria 9454109
190 2988226018 2988225383 Bacteria 7221625
191 2988226093 2988225383 Bacteria 7221625
192 2988226845 2988225383 Bacteria 7221625
193 2996633931 2996632988 Bacteria 6921523
194 8002322382 8002317523 Bacteria 8051857
195 8046992303 8046991243 Bacteria 8497463
196 8054281060 8054280661 Bacteria 4232245
197 8054465806 8054465665 Bacteria 7323556
198 8054470796 8054465665 Bacteria 7323556
199 8054795553 8054795415 Bacteria 9785225
200 8054795674 8054795415 Bacteria 9785225
201 8054797814 8054795415 Bacteria 9785225
202 8054798001 8054795415 Bacteria 9785225
203 8054798436 8054795415 Bacteria 9785225
204 8054798498 8054795415 Bacteria 9785225
205 8054800855 8054795415 Bacteria 9785225
206 8054800915 8054795415 Bacteria 9785225
207 8054800933 8054795415 Bacteria 9785225
208 8054802365 8054795415 Bacteria 9785225
209 8054802768 8054795415 Bacteria 9785225
210 8054804104 8054795415 Bacteria 9785225
211 8056533603 8056533031 Bacteria 8964429
212 8056533723 8056533031 Bacteria 8964429
213 8056534524 8056533031 Bacteria 8964429
214 8056535439 8056533031 Bacteria 8964429
215 8056537375 8056533031 Bacteria 8964429
216 8056537688 8056533031 Bacteria 8964429
217 8056537798 8056533031 Bacteria 8964429
218 8056537992 8056533031 Bacteria 8964429
219 8056538327 8056533031 Bacteria 8964429
220 8057475199 8057473075 Bacteria 5892720
221 8057475337 8057473075 Bacteria 5892720
222 Ga0055541_1001025
223 Ga0055541_1001804
224 Ga0055541_1003049
225 Ga0055541_1004842
226 Ga0065165_1027635
227 Ga0070658_10141910
228 Ga0157371_10081021
229 Ga0157369_10036063
230 Ga0209784_100278
231 Ga0209566_100022
232 Ga0209566_100087
233 Ga0209566_100111
234 Ga0209566_100158
235 Ga0209566_100301
236 Ga0209566_103157
237 Ga0209675_1008745
238 Ga0209675_1008900
239 Ga0209025_1013644
240 Ga0209025_1020521
241 Ga0395899_0063150
242 Ga0439436_0002419
243 Ga0439439_0000186
244 Ga0439433_0002685
245 Ga0439433_0011556
246 Ga0439449_0000707
247 Ga0439449_0002185
248 Ga0439462_0012934
249 Ga0466969_0000574
250 Ga0451576_0197303
251 Ga0495590_0018665
252 Ga0495661_0068067
253 Ga0495660_0013728
254 Ga0495660_0032946
255 Ga0495660_0147668
256 Ga0495681_0085961
257 Ga0495626_0032462
258 Ga0496116_0001046
259 Ga0496116_0005153
260 Ga0496116_0011128
261 Ga0496116_0022891
262 Ga0496116_0029432
263 Ga0496116_0047475
264 Ga0496116_0051792
265 Ga0496116_0067672
266 Ga0496116_0089588
267 Ga0496116_0093280
268 Ga0496116_0147820
269 Ga0496116_0166740
270 Ga0496116_0168029
271 Ga0496117_0000611
272 Ga0496119_0000593
273 Ga0496119_0010549
274 Ga0496120_0000071
275 Ga0496120_0000118
276 Ga0496120_0006678
277 Ga0496120_0006849
278 Ga0496120_0078440
279 Ga0496121_0011896
280 Ga0496122_0000012
281 Ga0496122_0004532
282 Ga0496122_0004997
283 Ga0496122_0006959
284 Ga0496122_0008668
285 Ga0496122_0014884
286 Ga0496122_0018667
287 Ga0496122_0023912
288 Ga0496122_0050460
289 Ga0496122_0138604
290 Ga0496122_0188354
291 Ga0496123_0000611
292 Ga0496123_0003592
293 Ga0496123_0009185
294 Ga0496123_0097310
295 Ga0496124_0000839
296 Ga0496124_0162652
297 Ga0496125_0000365
298 Ga0496125_0002223
299 Ga0496125_0033504
300 Ga0496126_0000008
301 Ga0496126_0000353
302 Ga0501306_000134
303 Ga0501266_006021
304 Ga0587082_003453
305 8056537555
306 2512729718
307 2524187717
308 2550899682
309 2550901404
310 2550903562
311 2571533059
312 2587739411
313 2587741579
314 2587742891
315 2587743689
316 2587744148
317 2587745006
318 2595316163
319 2595317023
320 2595318279
321 2595318322
322 2595318432
323 2595318686
324 2595318807
325 2595320449
326 2601637570
327 2644424184
328 2644424194
329 2644424327
330 2644425014
331 2644425496
332 2644426186
333 2644426302
334 2673820663
335 2673822709
336 2673822953
337 2728532073
338 2728533225
339 2793183809
340 2808892642
341 2819669724
342 2819669943
343 2819670033
344 2819671534
345 2819671638
346 2819674005
347 2819675714
348 2821117983
349 2857453356
350 2857454902
351 2857456135
352 2857456433
353 2857457282
354 2857457717
355 2857457922
356 2857459271
357 2857459973
358 2857476719
359 2885529082
360 2888583150
361 2888583829
362 2889053721
363 2904115792
364 2904117664
365 2904118344
366 2904167199
367 2904755521
368 2904756735
369 2904758519
370 2904760909
371 2904761004
372 2919426284
373 2919426568
374 2919427813
375 2919427865
376 2919428012
377 2919428094
378 2919428220
379 2919430680
380 2919432320
381 2925330062
382 2925330236
383 2925331948
384 2938654140
385 2939684632
386 2945991978
387 2968563814
388 2971408707
389 2971408808
390 2971410018
391 2971410581
392 2971410984
393 2971411106
394 2971411965
395 2971413079
396 2971414558
397 2971416077
398 2971416492
399 2980183484
400 2980183786
401 2980185009
402 2980185142
403 2980185755
404 2980185960
405 2980186074
406 2980186651
407 2980186674
408 2980188174
409 2980188344
410 2980188585
411 2988226018
412 2988226093
413 2988226845
414 2996633931
415 8002322382
416 8046992303
417 8054281060
418 8054465806
419 8054470796
420 8054795553
421 8054795674
422 8054797814
423 8054798001
424 8054798436
425 8054798498
426 8054800855
427 8054800915
428 8054800933
429 8054802365
430 8054802768
431 8054804104
432 8056533603
433 8056533723
434 8056534524
435 8056535439
436 8056537375
437 8056537688
438 8056537798
439 8056537992
440 8056538327
441 8057475199
442 8057475337

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

145

357

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9412 12 305
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.9411 15 309
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9367 12 305
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9317 12 305
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9276 12 305
ID Description Score Start End Superfamily
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9556 62 305 1.10.3720.10
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9481 62 305 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9101 63 307 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.903 63 307 1.10.3720.10
af_I6XFF3_60_302_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9005 63 303 1.10.3720.10
ID Description Score Start End GO Terms
AF-U4TTI9-F1-model_v4 YteP 0.9852 48 310 GO:0005886
GO:0055085
AF-A0A430JHP1-F1-model_v4 Sugar ABC transporter permease 0.9846 27 310 GO:0005886
GO:0055085
AF-A0A357M256-F1-model_v4 Protein lplB 0.9843 75 310 GO:0005886
GO:0055085
AF-A0A2V5K2Y4-F1-model_v4 Protein lplB 0.9813 27 310 GO:0005886
GO:0055085
AF-A0A2V2DX47-F1-model_v4 Protein lplB 0.9809 17 310 GO:0005886
GO:0055085

Map