F330519

General Info

Members Datasets Scaffolds Average Seq Length
218 200 436 190

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2554235005|2554257992
Length 215
Sequence HAVLAALLDEELSGYQLAKAFGLGVANFWHAQPQQLYAELARLEKDGLVTGREVVQENRPNKRLFKVTDAGLGELEAFAAASAKPSFIRDDLLVKVHAADHVDTDTLIAQLTERADFARAKAELLGKLLRSLRGEGRDEDEYLRHGERIGPYLTCLRGLAFEEGNRDWCERTAQVLRERQKRQAQHGQQEHQKRPQQERQQQRGARERRDVHARR

Samples

Sample ID Description Type Environment
1 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
15 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
41 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
42 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
43 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
71 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
73 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
74 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
75 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
76 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
79 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
82 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
83 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
86 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
87 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
88 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
89 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
90 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
91 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
92 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
93 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
94 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
95 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
96 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
97 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
98 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
99 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
100 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
101 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
102 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
103 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
104 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
105 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
106 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
107 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
108 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
109 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
110 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
111 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
112 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
113 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
114 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
115 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
116 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
117 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
118 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
119 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
120 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
121 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
122 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
123 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
124 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
125 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
126 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
127 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
128 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
129 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
130 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
131 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
132 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
133 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
134 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
138 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
139 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
140 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
141 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
142 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
143 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
144 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
145 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
146 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
147 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
148 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
149 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
150 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
151 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
152 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
153 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
154 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
155 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
156 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
157 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
158 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
159 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
160 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
161 2643221548 Streptomyces sp. Root55 Isolate Unclassified
162 2643221578 Streptomyces sp. Root63 Isolate Unclassified
163 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
164 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
165 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
166 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
167 2643221714 Streptomyces sp. Root264 Isolate Unclassified
168 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
169 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
170 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
171 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
172 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
173 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
174 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
175 2867475112 Streptomyces sp. TM32 Isolate Unclassified
176 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
177 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
178 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
179 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
180 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
181 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
182 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
183 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
184 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
185 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
186 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
187 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
188 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
189 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
190 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
191 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
192 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
193 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
194 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
195 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
196 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
197 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
198 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere
199 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
200 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.28
Metatranscriptomes 0
Isolates 19.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.63
Nodule 0
Rhizoplane 0.46
Rhizosphere 76.15
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25160J50197_1012802 3300003354 Bacteria 2890
2 Ga0070658_10510207 3300005327 Bacteria 1039
3 Ga0070683_100005309 3300005329 Bacteria 10737
4 Ga0070670_100251360 3300005331 Bacteria 1540
5 Ga0068869_100061957 3300005334 Bacteria 2744
6 Ga0068869_100131778 3300005334 Bacteria 1922
7 Ga0068868_100735447 3300005338 Bacteria 885
8 Ga0070660_100305777 3300005339 Bacteria 1304
9 Ga0070661_100012287 3300005344 Bacteria 5987
10 Ga0070692_10010527 3300005345 Bacteria 4214
11 Ga0070668_100105786 3300005347 Bacteria 2235
12 Ga0070669_100101079 3300005353 Bacteria 2175
13 Ga0070675_100006536 3300005354 Bacteria 8957
14 Ga0070673_100521144 3300005364 Bacteria 1077
15 Ga0070710_10165768 3300005437 Bacteria 1373
16 Ga0070701_10125632 3300005438 Bacteria 1451
17 Ga0070700_100002128 3300005441 Bacteria 10044
18 Ga0070663_100004098 3300005455 Bacteria 8512
19 Ga0068867_100573730 3300005459 Bacteria 980
20 Ga0070684_100035010 3300005535 Bacteria 4296
21 Ga0070672_101055059 3300005543 Bacteria 721
22 Ga0068855_100614263 3300005563 Bacteria 1171
23 Ga0070664_100048759 3300005564 Bacteria 3579
24 Ga0068857_100016648 3300005577 Bacteria 6440
25 Ga0070702_100517706 3300005615 Bacteria 879
26 Ga0068852_100325761 3300005616 Bacteria 1493
27 Ga0068866_10164748 3300005718 Bacteria 1296
28 Ga0068862_100057353 3300005844 Bacteria 3340
29 Ga0081539_10004755 3300005985 Bacteria 14661
30 Ga0081539_10024218 3300005985 Bacteria 3946
31 Ga0075429_100505435 3300006880 Bacteria 1059
32 Ga0068865_100168095 3300006881 Bacteria 1679
33 Ga0111539_10002197 3300009094 Bacteria 26053
34 Ga0105245_10019940 3300009098 Bacteria 5879
35 Ga0105243_10014985 3300009148 Bacteria 5869
36 Ga0105243_10098624 3300009148 Bacteria 2421
37 Ga0105237_10084694 3300009545 Bacteria 3160
38 Ga0105238_10288994 3300009551 Bacteria 1621
39 Ga0105249_10241623 3300009553 Bacteria 1786
40 Ga0105239_10016656 3300010375 Bacteria 8124
41 Ga0105239_10095823 3300010375 Bacteria 3278
42 Ga0157377_10031333 3300014745 Bacteria 2888
43 Ga0157376_10481766 3300014969 Bacteria 1216
44 Ga0213875_10005802 3300021388 Bacteria 6571
45 Ga0209758_1001828 3300025297 Bacteria 23445
46 Ga0207426_1001729 3300025302 Bacteria 16693
47 Ga0207426_1003251 3300025302 Bacteria 9098
48 Ga0207426_1003462 3300025302 Bacteria 8543
49 Ga0207426_1019502 3300025302 Bacteria 2369
50 Ga0207692_10004450 3300025898 Bacteria 5549
51 Ga0207643_10203565 3300025908 Bacteria 1206
52 Ga0207705_10360662 3300025909 Bacteria 1121
53 Ga0207671_10048443 3300025914 Bacteria 3145
54 Ga0207671_10300429 3300025914 Bacteria 1268
55 Ga0207649_10074266 3300025920 Bacteria 2181
56 Ga0207681_10168536 3300025923 Bacteria 1658
57 Ga0207694_10533292 3300025924 Bacteria 984
58 Ga0207650_10348915 3300025925 Bacteria 1217
59 Ga0207659_10038032 3300025926 Bacteria 3344
60 Ga0207687_10060219 3300025927 Bacteria 2677
61 Ga0207709_10010333 3300025935 Bacteria 5141
62 Ga0207709_10040249 3300025935 Bacteria 2797
63 Ga0207704_10255729 3300025938 Bacteria 1318
64 Ga0207691_10628492 3300025940 Bacteria 908
65 Ga0207689_10004771 3300025942 Bacteria 12227
66 Ga0207689_10061226 3300025942 Bacteria 3095
67 Ga0207689_10139166 3300025942 Bacteria 1999
68 Ga0207661_10333142 3300025944 Bacteria 1366
69 Ga0207679_10012252 3300025945 Bacteria 5586
70 Ga0207651_10858424 3300025960 Bacteria 807
71 Ga0207712_10160051 3300025961 Bacteria 1749
72 Ga0207668_10083380 3300025972 Bacteria 2326
73 Ga0207640_10146349 3300025981 Bacteria 1729
74 Ga0207677_10264238 3300026023 Bacteria 1404
75 Ga0207678_10005683 3300026067 Bacteria 11142
76 Ga0207708_10007945 3300026075 Bacteria 7863
77 Ga0207641_10452608 3300026088 Bacteria 1241
78 Ga0207674_10142517 3300026116 Bacteria 2356
79 Ga0207683_10267373 3300026121 Bacteria 1562
80 Ga0207698_10175264 3300026142 Bacteria 1893
81 Ga0207428_10110174 3300027907 Bacteria 2120
82 Ga0268265_10240431 3300028380 Bacteria 1597
83 Ga0307517_10016360 3300028786 Bacteria 9756
84 Ga0307511_10186846 3300030521 Bacteria 1104
85 Ga0307511_10201466 3300030521 Bacteria 1033
86 Ga0307509_10592501 3300031507 Bacteria 782
87 Ga0307508_10098038 3300031616 Bacteria 2523
88 Ga0307514_10123297 3300031649 Bacteria 1802
89 Ga0307405_10199857 3300031731 Bacteria 1451
90 Ga0307413_10734571 3300031824 Bacteria 824
91 Ga0307407_10297405 3300031903 Bacteria 1124
92 Ga0307409_100280919 3300031995 Bacteria 1539
93 Ga0307409_100829851 3300031995 Bacteria 934
94 Ga0307416_100635633 3300032002 Bacteria 1151
95 Ga0307415_100015673 3300032126 Bacteria 4496
96 Ga0307507_10223032 3300033179 Bacteria 1264
97 Ga0395900_0768033 3300037418 Bacteria 893
98 Ga0436364_1067854 3300037853 Bacteria 29581
99 Ga0439449_0006989 3300042007 Bacteria 4300
100 Ga0466972_0148242 3300044658 Bacteria 1103
101 Ga0466965_0045091 3300044683 Bacteria 2180
102 Ga0466957_0270702 3300044842 Bacteria 1134
103 Ga0466967_0988766 3300045976 Bacteria 838
104 Ga0495592_0026059 3300046454 Bacteria 4435
105 Ga0495603_0001743 3300046455 Bacteria 12814
106 Ga0495629_0000764 3300046459 Bacteria 25911
107 Ga0495629_0222670 3300046459 Bacteria 1301
108 Ga0495629_0271846 3300046459 Bacteria 1164
109 Ga0495638_0103192 3300046460 Bacteria 1703
110 Ga0495651_0185445 3300046462 Bacteria 1468
111 Ga0495653_0040908 3300046463 Bacteria 3620
112 Ga0495580_0012778 3300046472 Bacteria 6435
113 Ga0495662_0001148 3300046476 Bacteria 13045
114 Ga0495664_0001817 3300046477 Bacteria 11328
115 Ga0495585_0009324 3300046492 Bacteria 5895
116 Ga0495594_0010315 3300046499 Bacteria 4843
117 Ga0495594_0191247 3300046499 Bacteria 1166
118 Ga0495608_0001228 3300046511 Bacteria 18173
119 Ga0495618_0056373 3300046514 Bacteria 2488
120 Ga0495628_0056009 3300046516 Bacteria 3104
121 Ga0495643_0005791 3300046522 Bacteria 8271
122 Ga0495666_0006666 3300046526 Bacteria 5805
123 Ga0495652_0189168 3300046529 Bacteria 1572
124 Ga0495665_0008229 3300046531 Bacteria 5654
125 Ga0495586_0020087 3300046535 Bacteria 3558
126 Ga0495587_0051004 3300046536 Bacteria 2447
127 Ga0495645_0037358 3300046543 Bacteria 3539
128 Ga0495622_0022906 3300046557 Bacteria 2911
129 Ga0495634_0112612 3300046642 Bacteria 1748
130 Ga0495611_0270318 3300046648 Bacteria 786
131 Ga0495635_0180104 3300046663 Bacteria 1436
132 Ga0495588_0066413 3300046674 Bacteria 1872
133 Ga0495657_0141594 3300046675 Bacteria 1498
134 Ga0495623_0086061 3300046679 Bacteria 1937
135 Ga0495646_0112304 3300046680 Bacteria 1550
136 Ga0495624_0407060 3300046690 Bacteria 817
137 Ga0495670_0036208 3300046691 Bacteria 2459
138 Ga0495589_0081965 3300046794 Bacteria 1569
139 Ga0495581_0009912 3300047315 Bacteria 5512
140 Ga0495604_0020821 3300047317 Bacteria 5235
141 Ga0495636_0167738 3300047318 Bacteria 992
142 Ga0495674_0201333 3300047319 Bacteria 1651
143 Ga0495676_0029838 3300047321 Bacteria 4637
144 Ga0495676_0534425 3300047321 Bacteria 767
145 Ga0495687_084299 3300047443 Bacteria 1235
146 Ga0495675_0156625 3300047444 Bacteria 1404
147 Ga0495685_005258 3300047447 Bacteria 4215
148 Ga0495685_178132 3300047447 Bacteria 685
149 Ga0495681_0008725 3300047470 Bacteria 6324
150 Ga0495686_0060123 3300047472 Bacteria 2363
151 Ga0495593_0016510 3300047673 Bacteria 4163
152 Ga0501034_0410768 3300049571 Bacteria 1276
153 Ga0501046_0011694 3300049580 Bacteria 7496
154 Ga0501047_0154767 3300049581 Bacteria 2167
155 Ga0501257_057019 3300049686 Bacteria 982
156 Ga0501035_0102953 3300049822 Bacteria 2505
157 nmdc:mga09592_764194_c1 3300050508 Bacteria 819
158 nmdc:mga08y16_38735_c1 3300050511 Bacteria 5003
159 Ga0495601_0017025 3300053077 Bacteria 4410
160 Ga0500610_0198711 3300053079 Bacteria 968
161 Ga0495619_0017168 3300053085 Bacteria 4584
162 Ga0500578_0025378 3300053086 Bacteria 3803
163 Ga0500566_0038848 3300053094 Bacteria 2753
164 Ga0500654_031483 3300053099 Bacteria 3183
165 Ga0500560_022663 3300053107 Bacteria 1812
166 Ga0500614_034765 3300053123 Bacteria 1252
167 Ga0500628_001639 3300053129 Bacteria 3792
168 Ga0500652_002179 3300053131 Bacteria 5886
169 Ga0500658_0045074 3300053134 Bacteria 1781
170 Ga0500561_0007269 3300053137 Bacteria 2150
171 Ga0500579_040306 3300053143 Bacteria 2942
172 Ga0500600_0059319 3300053149 Bacteria 2139
173 Ga0500616_0083848 3300053153 Bacteria 1595
174 Ga0500633_0005718 3300053160 Bacteria 2983
175 Ga0500587_000549 3300053739 Bacteria 4614
176 2554257992 2554235005 Bacteria 6457341
177 2515757434 2515154137 Bacteria 5711575
178 2516088913 2515154203 Bacteria 5458536
179 2643765375 2643221548 Bacteria 8053412
180 2643898874 2643221578 Bacteria 9213798
181 2644019473 2643221601 Bacteria 7493239
182 2644180640 2643221631 Bacteria 8168043
183 2644403566 2643221673 Bacteria 9196637
184 2644462554 2643221682 Bacteria 6743283
185 2644627001 2643221714 Bacteria 9015452
186 2676494904 2675903060 Bacteria 10051191
187 2791910700 2791354901 Bacteria 8322202
188 2793983420 2791355406 Bacteria 11364898
189 2811843906 2808606982 Bacteria 7791042
190 2819699659 2818991463 Bacteria 7948711
191 2862180767 2862178590 Bacteria 8583590
192 2862297033 2862290372 Bacteria 7471434
193 2867477583 2867475112 Bacteria 6909112
194 2868089414 2868088558 Bacteria 7609351
195 2875392195 2875391855 Bacteria 7600475
196 2891401692 2891395885 Bacteria 9251614
197 2891560468 2891554331 Bacteria 8812224
198 2895428843 2895427314 Bacteria 13147766
199 2946052696 2946045630 Bacteria 8527308
200 2946076234 2946072368 Bacteria 8999607
201 2956939797 2956939328 Bacteria 3474458
202 2966605174 2966598605 Bacteria 7676064
203 2990089639 2990088156 Bacteria 6657676
204 2997603880 2997600082 Bacteria 9896405
205 3002998865 3002998708 Bacteria 11715108
206 3006322599 3006321560 Bacteria 8247479
207 3006397183 3006393351 Bacteria 6615579
208 3006492674 3006486233 Bacteria 8157040
209 8047896566 8047893842 Bacteria 11723082
210 8048134468 8048127548 Bacteria 11053136
211 8048362369 8048356638 Bacteria 11044339
212 8048373580 8048369669 Bacteria 11666822
213 8048384662 8048379754 Bacteria 11877923
214 8055066320 8055066027 Bacteria 9479577
215 8055179991 8055172936 Bacteria 9305943
216 8056210048 8056207758 Bacteria 8639239
217 8056454278 8056447290 Bacteria 7680491
218 8056672938 8056667051 Bacteria 6953971
219 JGI25160J50197_1012802
220 Ga0070658_10510207
221 Ga0070683_100005309
222 Ga0070670_100251360
223 Ga0068869_100061957
224 Ga0068869_100131778
225 Ga0068868_100735447
226 Ga0070660_100305777
227 Ga0070661_100012287
228 Ga0070692_10010527
229 Ga0070668_100105786
230 Ga0070669_100101079
231 Ga0070675_100006536
232 Ga0070673_100521144
233 Ga0070710_10165768
234 Ga0070701_10125632
235 Ga0070700_100002128
236 Ga0070663_100004098
237 Ga0068867_100573730
238 Ga0070684_100035010
239 Ga0070672_101055059
240 Ga0068855_100614263
241 Ga0070664_100048759
242 Ga0068857_100016648
243 Ga0070702_100517706
244 Ga0068852_100325761
245 Ga0068866_10164748
246 Ga0068862_100057353
247 Ga0081539_10004755
248 Ga0081539_10024218
249 Ga0075429_100505435
250 Ga0068865_100168095
251 Ga0111539_10002197
252 Ga0105245_10019940
253 Ga0105243_10014985
254 Ga0105243_10098624
255 Ga0105237_10084694
256 Ga0105238_10288994
257 Ga0105249_10241623
258 Ga0105239_10016656
259 Ga0105239_10095823
260 Ga0157377_10031333
261 Ga0157376_10481766
262 Ga0213875_10005802
263 Ga0209758_1001828
264 Ga0207426_1001729
265 Ga0207426_1003251
266 Ga0207426_1003462
267 Ga0207426_1019502
268 Ga0207692_10004450
269 Ga0207643_10203565
270 Ga0207705_10360662
271 Ga0207671_10048443
272 Ga0207671_10300429
273 Ga0207649_10074266
274 Ga0207681_10168536
275 Ga0207694_10533292
276 Ga0207650_10348915
277 Ga0207659_10038032
278 Ga0207687_10060219
279 Ga0207709_10010333
280 Ga0207709_10040249
281 Ga0207704_10255729
282 Ga0207691_10628492
283 Ga0207689_10004771
284 Ga0207689_10061226
285 Ga0207689_10139166
286 Ga0207661_10333142
287 Ga0207679_10012252
288 Ga0207651_10858424
289 Ga0207712_10160051
290 Ga0207668_10083380
291 Ga0207640_10146349
292 Ga0207677_10264238
293 Ga0207678_10005683
294 Ga0207708_10007945
295 Ga0207641_10452608
296 Ga0207674_10142517
297 Ga0207683_10267373
298 Ga0207698_10175264
299 Ga0207428_10110174
300 Ga0268265_10240431
301 Ga0307517_10016360
302 Ga0307511_10186846
303 Ga0307511_10201466
304 Ga0307509_10592501
305 Ga0307508_10098038
306 Ga0307514_10123297
307 Ga0307405_10199857
308 Ga0307413_10734571
309 Ga0307407_10297405
310 Ga0307409_100280919
311 Ga0307409_100829851
312 Ga0307416_100635633
313 Ga0307415_100015673
314 Ga0307507_10223032
315 Ga0395900_0768033
316 Ga0436364_1067854
317 Ga0439449_0006989
318 Ga0466972_0148242
319 Ga0466965_0045091
320 Ga0466957_0270702
321 Ga0466967_0988766
322 Ga0495592_0026059
323 Ga0495603_0001743
324 Ga0495629_0000764
325 Ga0495629_0222670
326 Ga0495629_0271846
327 Ga0495638_0103192
328 Ga0495651_0185445
329 Ga0495653_0040908
330 Ga0495580_0012778
331 Ga0495662_0001148
332 Ga0495664_0001817
333 Ga0495585_0009324
334 Ga0495594_0010315
335 Ga0495594_0191247
336 Ga0495608_0001228
337 Ga0495618_0056373
338 Ga0495628_0056009
339 Ga0495643_0005791
340 Ga0495666_0006666
341 Ga0495652_0189168
342 Ga0495665_0008229
343 Ga0495586_0020087
344 Ga0495587_0051004
345 Ga0495645_0037358
346 Ga0495622_0022906
347 Ga0495634_0112612
348 Ga0495611_0270318
349 Ga0495635_0180104
350 Ga0495588_0066413
351 Ga0495657_0141594
352 Ga0495623_0086061
353 Ga0495646_0112304
354 Ga0495624_0407060
355 Ga0495670_0036208
356 Ga0495589_0081965
357 Ga0495581_0009912
358 Ga0495604_0020821
359 Ga0495636_0167738
360 Ga0495674_0201333
361 Ga0495676_0029838
362 Ga0495676_0534425
363 Ga0495687_084299
364 Ga0495675_0156625
365 Ga0495685_005258
366 Ga0495685_178132
367 Ga0495681_0008725
368 Ga0495686_0060123
369 Ga0495593_0016510
370 Ga0501034_0410768
371 Ga0501046_0011694
372 Ga0501047_0154767
373 Ga0501257_057019
374 Ga0501035_0102953
375 nmdc:mga09592_764194_c1
376 nmdc:mga08y16_38735_c1
377 Ga0495601_0017025
378 Ga0500610_0198711
379 Ga0495619_0017168
380 Ga0500578_0025378
381 Ga0500566_0038848
382 Ga0500654_031483
383 Ga0500560_022663
384 Ga0500614_034765
385 Ga0500628_001639
386 Ga0500652_002179
387 Ga0500658_0045074
388 Ga0500561_0007269
389 Ga0500579_040306
390 Ga0500600_0059319
391 Ga0500616_0083848
392 Ga0500633_0005718
393 Ga0500587_000549
394 2554257992
395 2515757434
396 2516088913
397 2643765375
398 2643898874
399 2644019473
400 2644180640
401 2644403566
402 2644462554
403 2644627001
404 2676494904
405 2791910700
406 2793983420
407 2811843906
408 2819699659
409 2862180767
410 2862297033
411 2867477583
412 2868089414
413 2875392195
414 2891401692
415 2891560468
416 2895428843
417 2946052696
418 2946076234
419 2956939797
420 2966605174
421 2990089639
422 2997603880
423 3002998865
424 3006322599
425 3006397183
426 3006492674
427 8047896566
428 8048134468
429 8048362369
430 8048373580
431 8048384662
432 8055066320
433 8055179991
434 8056210048
435 8056454278
436 8056672938

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

3

77

0.96

PF10400

Vir_act_alpha_C

Virulence activator alpha C-term

88

177

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ejo-assembly1.cif.gz_A-2 crystal structure of padr family transcriptional regulator from eggerthella lenta dsm 2243 0.925 3 81
5h20-assembly1.cif.gz_A-2 x-ray structure of padr-like transcription factor from bacteroid fragilis 0.9189 3 84
5zhv-assembly1.cif.gz_B crystal structure of the padr-family transcriptional regulator rv3488 of mycobacterium tuberculosis h37rv in complex with zinc ion 0.8969 2 78
3hhh-assembly1.cif.gz_B crystal structure of transcriptional regulator, a member of padr family, from enterococcus faecalis v583 0.891 3 78
1xma-assembly1.cif.gz_B-2 structure of a transcriptional regulator from clostridium thermocellum cth-833 0.8909 3 78
ID Description Score Start End Superfamily
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9533 1 88 1.10.10.10
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9429 1 88 1.10.10.10
5h20A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9189 3 84 1.10.10.10
5x11A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9106 3 91 1.10.10.10
5x13A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9098 3 90 1.10.10.10
ID Description Score Start End GO Terms
AF-X1J3N0-F1-model_v4 Transcription regulator PadR N-terminal domain-containing protein 0.9369 1 75
AF-A0A4Q3VP43-F1-model_v4 PadR family transcriptional regulator 0.9246 2 81
AF-A0A7W0J895-F1-model_v4 PadR family transcriptional regulator 0.918 1 91
AF-A0A7V5CK62-F1-model_v4 PadR family transcriptional regulator 0.9179 3 83
AF-A0A652LG23-F1-model_v4 deleted 0.9127 1 93

Map