F329999
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 218 | 197 | 108 | 633 |
Family's Representative Sequence
| Representative Sequence | 3300021384|Ga0213876_10000350|Ga0213876_1000035010 |
| Length | 681 |
| Sequence | VPGRKEDDRAERAASLEAARTDIEALRAYADLLADDIADEHERRALAKTWGDGPGFWGWLASTNHKTVGRRFIYTAFGFFILAGILAVLMRVQLARPESRFLNPDLYNQIFTMHGTTMMFLFAVPVMEAVAVYVLPLMLGARNIAFPRLNAFSYWVYLFGGVMLWVAFVLNVGPDAGWFSYVPLSGPEYGAGKRVDFWAQMITFTEVSALCVATEIITTFFKMRAPGMSLNRVPVYCWSVLVMAFMVFFAMPTIAWASACLMMDRLIGTHFFNPAEGGDPILWQHLFWFFGHPEVYIIFIPGTGFVSTILSTFSRRPIFGYTALVLALVSTGFIGFGLWVHHMFATGLPRMGESFFTGATIMIAIPAGVQIFCWIATLWGGRPVFKSPMMFVLGFFFIFVIGGMTGVMQGAVPVDLQVHDTYFVVAHFHYVLIGGAVFPLFGAFHYWFPKVTGRLLSEKLGHATFWVMFVGFNLTFFPMHILGLRGMPRRVYTYQPNLGWGDLNMLASAGGVLLTLGVLLFIVNALRSLRAGALAGDNPWGAATLEWATSSPPPAYNFLRPPTVDSRDTLWTQPADQPVVIGLRSDVREVLVTRALDAEPDLKTEFPDSSIWPLLAALATTAMFIGTIFTPWALPVGMLPVFVTLTGWFWPKKKRLAEERPPEEVKEKHGERWLKLQEQES |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2508501128 | Bradyrhizobium sp. ARR65 | Isolate | Nodule |
| 2 | 2513237088 | Rhizobium mesoamericanum STM6155 | Isolate | Nodule |
| 3 | 2513237092 | Bradyrhizobium sp. WSM1743 | Isolate | Nodule |
| 4 | 2513237098 | Bradyrhizobium elkanii WSM2783 | Isolate | Nodule |
| 5 | 2516653077 | Rhizobium acaciae WSM1481 | Isolate | Nodule |
| 6 | 2517093000 | Rhizobium leguminosarum bv. trifolii SRDI943 | Isolate | Nodule |
| 7 | 2524023209 | Rhizobium leucaenae USDA 9039 | Isolate | Nodule |
| 8 | 2585427526 | Rhizobium leguminosarum OV152 | Isolate | Rhizosphere |
| 9 | 2585427633 | Neorhizobium galegae bv. officinalis HAMBI 1141 | Isolate | Nodule |
| 10 | 2718217882 | Rhizobium sp. N741 | Isolate | Nodule |
| 11 | 2718217997 | Rhizobium phaseoli sv. phaseoli R723 | Isolate | Nodule |
| 12 | 2718218009 | Rhizobium sp. N561 | Isolate | Nodule |
| 13 | 2718218199 | Rhizobium phaseoli sv. phaseoli N261 | Isolate | Nodule |
| 14 | 2718218232 | Rhizobium phaseoli sv. phaseoli N161 | Isolate | Nodule |
| 15 | 2718218233 | Rhizobium phaseoli sv. phaseoli R744 | Isolate | Nodule |
| 16 | 2718218235 | Rhizobium phaseoli sv. phaseoli R620 | Isolate | Nodule |
| 17 | 2718218269 | Rhizobium phaseoli sv. phaseoli N671 | Isolate | Nodule |
| 18 | 2718218363 | Rhizobium sp. N113 | Isolate | Nodule |
| 19 | 2718218365 | Rhizobium sp. N731 | Isolate | Nodule |
| 20 | 2718218366 | Rhizobium sp. N621 | Isolate | Nodule |
| 21 | 2721755514 | Rhizobium sp. N6212 | Isolate | Nodule |
| 22 | 2721755556 | Rhizobium phaseoli sv. phaseoli N931 | Isolate | Nodule |
| 23 | 2721755684 | Rhizobium phaseoli sv. phaseoli N841 | Isolate | Nodule |
| 24 | 2721755685 | Rhizobium phaseoli sv. phaseoli R611 | Isolate | Nodule |
| 25 | 2721755810 | Rhizobium sp. N871 | Isolate | Nodule |
| 26 | 2721755819 | Rhizobium phaseoli sv. phaseoli N771 | Isolate | Nodule |
| 27 | 2721755822 | Rhizobium phaseoli sv. phaseoli R650 | Isolate | Nodule |
| 28 | 2721755823 | Rhizobium phaseoli sv. phaseoli R630 | Isolate | Nodule |
| 29 | 2728369352 | Rhizobium phaseoli sv. phaseoli N831 | Isolate | Nodule |
| 30 | 2728369365 | Rhizobium sp. N1341 | Isolate | Nodule |
| 31 | 2728369397 | Rhizobium sp. N1314 | Isolate | Nodule |
| 32 | 2791355259 | Rhizobium hidalgonense FH14 | Isolate | Nodule |
| 33 | 2791355264 | Rhizobium sp. S9 | Isolate | Nodule |
| 34 | 2818991439 | Agrobacterium tumefaciens 1187 | Isolate | Unclassified |
| 35 | 2818991448 | Rhizobium miluonense 1234 | Isolate | Unclassified |
| 36 | 2838016132 | Rhizobium phaseoli SEMIA 4071 | Isolate | Nodule |
| 37 | 2838022645 | Rhizobium aethiopicum SEMIA 4074 | Isolate | Nodule |
| 38 | 2838048938 | Rhizobium pisi 27/80 | Isolate | Nodule |
| 39 | 2838061910 | Rhizobium phaseoli L15 | Isolate | Nodule |
| 40 | 2838068647 | Rhizobium esperanzae VC28 | Isolate | Nodule |
| 41 | 2838074704 | Sinorhizobium terangae SEMIA 6460 | Isolate | Unclassified |
| 42 | 2842198810 | Rhizobium aethiopicum SEMIA 470 | Isolate | Nodule |
| 43 | 2842264693 | Rhizobium phaseoli SEMIA 487 | Isolate | Nodule |
| 44 | 2842285085 | Rhizobium lentis SEMIA 490 | Isolate | Nodule |
| 45 | 2842298080 | Rhizobium leucaenae SEMIA 492 | Isolate | Nodule |
| 46 | 2842311132 | Rhizobium phaseoli SEMIA 4002 | Isolate | Nodule |
| 47 | 2842357229 | Rhizobium leucaenae SEMIA 4015 | Isolate | Nodule |
| 48 | 2842402390 | Rhizobium lentis SEMIA 4033 | Isolate | Nodule |
| 49 | 2842409023 | Rhizobium lentis SEMIA 4034 | Isolate | Nodule |
| 50 | 2842415677 | Rhizobium lentis SEMIA 4036 | Isolate | Nodule |
| 51 | 2842422224 | Rhizobium esperanzae SEMIA 4042 | Isolate | Nodule |
| 52 | 2842428310 | Rhizobium phaseoli SEMIA 4050 | Isolate | Nodule |
| 53 | 2842434925 | Rhizobium esperanzae SEMIA 4051 | Isolate | Nodule |
| 54 | 2842441272 | Rhizobium esperanzae SEMIA 4053 | Isolate | Nodule |
| 55 | 2842447887 | Rhizobium esperanzae SEMIA 4055 | Isolate | Nodule |
| 56 | 2842462802 | Rhizobium phaseoli SEMIA 4057 | Isolate | Nodule |
| 57 | 2842469257 | Rhizobium phaseoli SEMIA 4058 | Isolate | Nodule |
| 58 | 2842775625 | Roseomonas sp. R-71825 | Isolate | Unclassified |
| 59 | 2847939898 | Bradyrhizobium ottawaense OO99 | Isolate | Unclassified |
| 60 | 2856320880 | Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 | Isolate | Nodule |
| 61 | 2857516855 | Rhizobium sp. R-72456 | Isolate | Unclassified |
| 62 | 2869278585 | Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 | Isolate | Nodule |
| 63 | 2874139085 | Mesorhizobium sp. M8A.F.Ca.ET.207.01.1.1 | Isolate | Nodule |
| 64 | 2878738818 | Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 | Isolate | Nodule |
| 65 | 2881364244 | Bradyrhizobium sp. RP6 | Isolate | Unclassified |
| 66 | 2881665667 | Bradyrhizobium vignae LMG 28791 | Isolate | Unclassified |
| 67 | 2888337043 | Mesorhizobium sp. M8A.F.Ca.ET.057.01.1.1 | Isolate | Nodule |
| 68 | 2903768456 | Bradyrhizobium sp. Leo121 | Isolate | Unclassified |
| 69 | 2922361189 | Bradyrhizobium australiense WSM 1791 | Isolate | Nodule |
| 70 | 2924718760 | Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 | Isolate | Nodule |
| 71 | 2924762789 | Mesorhizobium sp. WSM4303 | Isolate | Unclassified |
| 72 | 2924776078 | Mesorhizobium sp. M8A.F.Ca.ET.213.01.1.1 | Isolate | Nodule |
| 73 | 2929199973 | Roseomonas sp. R-73070 Hybrid assembly | Isolate | Unclassified |
| 74 | 2933599457 | Rhizobium phaseoli M3 | Isolate | Nodule |
| 75 | 2937822353 | Mesorhizobium neociceri CCANP35 | Isolate | Nodule |
| 76 | 2937877337 | Mesorhizobium sp. M8A.F.Ca.ET.161.01.1.1 | Isolate | Nodule |
| 77 | 2937972304 | Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 | Isolate | Nodule |
| 78 | 2958034702 | Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 | Isolate | Nodule |
| 79 | 2958041894 | Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 | Isolate | Nodule |
| 80 | 2958084443 | Mesorhizobium sp. M8A.F.Ca.ET.142.01.1.1 | Isolate | Nodule |
| 81 | 2958144490 | Mesorhizobium sp. M8A.F.Ca.ET.021.01.1.1 | Isolate | Nodule |
| 82 | 2968016561 | Mesorhizobium sp. M8A.F.Ca.ET.182.01.1.1 | Isolate | Nodule |
| 83 | 2970469710 | Mesorhizobium sp. M8A.F.Ca.ET.181.01.1.1 | Isolate | Nodule |
| 84 | 2970593180 | Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 | Isolate | Nodule |
| 85 | 2984509177 | Agrobacterium pusense SORGH_AS260 | Isolate | Aerial Root |
| 86 | 2984518228 | Agrobacterium pusense SORGH_AS285 | Isolate | Aerial Root |
| 87 | 2984537506 | Agrobacterium sp. SORGH_AS440 | Isolate | Aerial Root |
| 88 | 2984601300 | Rhizobium pusense SORGH_AS1083 | Isolate | Aerial Root |
| 89 | 2996348954 | Mesorhizobium sp. M8A.F.Ca.ET.167.01.1.1 | Isolate | Nodule |
| 90 | 2996887358 | Rhizobium sp. R711 | Isolate | Nodule |
| 91 | 3000135777 | Unclassified bacterium M00.F.Ca.ET.205.01.1.1 | Isolate | Unclassified |
| 92 | 3004275668 | Mesorhizobium sp. M8A.F.Ca.ET.208.01.1.1 | Isolate | Nodule |
| 93 | 3004289098 | Mesorhizobium sp. M8A.F.Ca.ET.023.02.2.1 | Isolate | Nodule |
| 94 | 3005409236 | Rhizobium sp. P32RR-XVIII | Isolate | Rhizosphere |
| 95 | 3005483717 | Bradyrhizobium agreste CNPSo 4010 | Isolate | Unclassified |
| 96 | 3005587118 | Bradyrhizobium glycinis CNPSo 4016 | Isolate | Unclassified |
| 97 | 3300002739 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA | Metagenome | Endosphere |
| 98 | 3300002773 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS | Metagenome | Endosphere |
| 99 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 100 | 3300003374 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF | Metagenome | Endosphere |
| 101 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 102 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 103 | 3300003792 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 | Metagenome | Endosphere |
| 104 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 105 | 3300004625 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 | Metagenome | Endosphere |
| 106 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 107 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 108 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 109 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 110 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 111 | 3300006946 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG | Metagenome | Nodule |
| 112 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 113 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 114 | 3300009765 | Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule | Metagenome | Nodule |
| 115 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 116 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 117 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 118 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 119 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 120 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 121 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 122 | 3300025208 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 123 | 3300025245 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) | Metagenome | Endosphere |
| 124 | 3300025258 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) | Metagenome | Endosphere |
| 125 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 126 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 127 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 128 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 129 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 130 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 131 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 132 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 133 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 134 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 135 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 136 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 137 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 138 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 139 | 3300027111 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) | Metagenome | Nodule |
| 140 | 3300027296 | Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) | Metagenome | Nodule |
| 141 | 3300027312 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 142 | 3300027357 | Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) | Metagenome | Nodule |
| 143 | 3300027361 | Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) | Metagenome | Nodule |
| 144 | 3300027363 | Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) | Metagenome | Nodule |
| 145 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 146 | 3300030500 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) | Metagenome | Rhizosphere |
| 147 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 148 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 149 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 150 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 151 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 152 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 153 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 154 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 155 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 156 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 157 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 158 | 3300041413 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 | Metagenome | Rhizosphere |
| 159 | 3300041494 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG | Metagenome | Unclassified |
| 160 | 3300041509 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG | Metagenome | Unclassified |
| 161 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 162 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 163 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 164 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 165 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 166 | 3300046542 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere | Metagenome | Rhizosphere |
| 167 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 168 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 169 | 3300046694 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere | Metagenome | Rhizosphere |
| 170 | 3300046810 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere | Metagenome | Rhizosphere |
| 171 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 172 | 3300048091 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere | Metagenome | Rhizosphere |
| 173 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 174 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 175 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 176 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 177 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 178 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 179 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 180 | 3300053134 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere | Metagenome | Endosphere |
| 181 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 182 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 183 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 184 | 8005282627 | Rhizobium phaseoli NC1 | Isolate | Nodule |
| 185 | 8005314921 | Rhizobium sp. P28RR-XV | Isolate | Rhizosphere |
| 186 | 8005321885 | Rhizobium sp. R72 | Isolate | Nodule |
| 187 | 8005382845 | Rhizobium sp. R634 | Isolate | Nodule |
| 188 | 8005395548 | Rhizobium sp. R339 | Isolate | Nodule |
| 189 | 8005430974 | Rhizobium phaseoli Y20 | Isolate | Nodule |
| 190 | 8005497431 | Rhizobium phaseoli CCGM8 | Isolate | Unclassified |
| 191 | 8005619151 | Rhizobium phaseoli CCGM2 | Isolate | Unclassified |
| 192 | 8005626139 | Rhizobium phaseoli Y18 | Isolate | Nodule |
| 193 | 8005645114 | Rhizobium tropici IGFRI Rhizo-19 | Isolate | Rhizosphere |
| 194 | 8005668836 | Rhizobium phaseoli CCGM9 | Isolate | Unclassified |
| 195 | 8006994254 | Bradyrhizobium sp. sGM-13 | Isolate | Nodule |
| 196 | 8056375014 | Rhizobium redzepovicii 18T | Isolate | Nodule |
| 197 | 8056673599 | Bradyrhizobium hereditatis WSM 1738 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 49.54 |
| Metatranscriptomes | 0 |
| Isolates | 50.46 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 1.83 |
| Bulb | 0 |
| Endosphere | 11.47 |
| Nodule | 44.04 |
| Rhizoplane | 0.92 |
| Rhizosphere | 26.61 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 15.14 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25158J39367_1000201 | 3300002739 | Bacteria | 14219 |
| 2 | JGI25152J39213_1005785 | 3300002773 | Bacteria | 3515 |
| 3 | JGI25153J46596_10000135 | 3300003215 | Bacteria | 79035 |
| 4 | JGI25161J50226_1000029 | 3300003374 | Bacteria | 144998 |
| 5 | Ga0055526_1008376 | 3300003771 | Bacteria | 5174 |
| 6 | Ga0055524_1005617 | 3300003775 | Bacteria | 5568 |
| 7 | Ga0055540_1000273 | 3300003792 | Bacteria | 46613 |
| 8 | Ga0055531_10000106 | 3300003794 | Bacteria | 91868 |
| 9 | Ga0055543_1000016 | 3300004625 | Bacteria | 176117 |
| 10 | Ga0070713_100024035 | 3300005436 | Bacteria | 4740 |
| 11 | Ga0070681_10036013 | 3300005458 | Bacteria | 4971 |
| 12 | Ga0070665_100000770 | 3300005548 | Bacteria | 42271 |
| 13 | Ga0070717_10019325 | 3300006028 | Bacteria | 5341 |
| 14 | Ga0075434_100000641 | 3300006871 | Bacteria | 27050 |
| 15 | Ga0079104_1000373 | 3300006946 | Bacteria | 52808 |
| 16 | Ga0105240_10044225 | 3300009093 | Bacteria | 5662 |
| 17 | Ga0105240_10241522 | 3300009093 | Bacteria | 2094 |
| 18 | Ga0105237_10135093 | 3300009545 | Bacteria | 2461 |
| 19 | Ga0123341_1000010 | 3300009765 | Bacteria | 118450 |
| 20 | Ga0105246_10080857 | 3300011119 | Bacteria | 2314 |
| 21 | Ga0157369_10054929 | 3300013105 | Bacteria | 4300 |
| 22 | Ga0182008_10000308 | 3300014497 | Bacteria | 38376 |
| 23 | Ga0182006_1017752 | 3300015261 | Bacteria | 3018 |
| 24 | Ga0182007_10000192 | 3300015262 | Bacteria | 41119 |
| 25 | Ga0213876_10000006 | 3300021384 | Bacteria | 700803 |
| 26 | Ga0213876_10000350 | 3300021384 | Bacteria | 39862 |
| 27 | Ga0213876_10033542 | 3300021384 | Bacteria | 2707 |
| 28 | Ga0213875_10000015 | 3300021388 | Bacteria | 280499 |
| 29 | Ga0213875_10011415 | 3300021388 | Bacteria | 4419 |
| 30 | Ga0209436_100015 | 3300025208 | Bacteria | 126026 |
| 31 | Ga0207425_1004792 | 3300025245 | Bacteria | 3979 |
| 32 | Ga0209129_1001214 | 3300025258 | Bacteria | 14807 |
| 33 | Ga0209233_1001741 | 3300025261 | Bacteria | 8404 |
| 34 | Ga0209673_1005474 | 3300025273 | Bacteria | 6365 |
| 35 | Ga0209130_1000051 | 3300025284 | Bacteria | 220482 |
| 36 | Ga0209025_1000496 | 3300025294 | Bacteria | 75601 |
| 37 | Ga0209564_1001417 | 3300025295 | Bacteria | 24719 |
| 38 | Ga0209758_1000154 | 3300025297 | Bacteria | 161260 |
| 39 | Ga0209256_1011207 | 3300025299 | Bacteria | 3619 |
| 40 | Ga0207426_1000043 | 3300025302 | Bacteria | 432827 |
| 41 | Ga0209051_1000192 | 3300025303 | Bacteria | 108667 |
| 42 | Ga0209257_1000300 | 3300025304 | Bacteria | 108786 |
| 43 | Ga0207707_10016368 | 3300025912 | Bacteria | 6467 |
| 44 | Ga0207707_10028005 | 3300025912 | Bacteria | 4926 |
| 45 | Ga0207660_10076251 | 3300025917 | Bacteria | 2451 |
| 46 | Ga0207652_10035232 | 3300025921 | Bacteria | 4223 |
| 47 | Ga0207652_10041645 | 3300025921 | Bacteria | 3906 |
| 48 | Ga0207700_10052449 | 3300025928 | Bacteria | 3050 |
| 49 | Ga0209281_1000108 | 3300027111 | Bacteria | 217582 |
| 50 | Ga0209389_1000189 | 3300027296 | Bacteria | 46457 |
| 51 | Ga0209389_1000216 | 3300027296 | Bacteria | 40414 |
| 52 | Ga0209371_1000012 | 3300027312 | Bacteria | 748304 |
| 53 | Ga0209589_1000002 | 3300027357 | Bacteria | 708598 |
| 54 | Ga0209589_1000845 | 3300027357 | Bacteria | 46457 |
| 55 | Ga0209489_100002 | 3300027361 | Bacteria | 708609 |
| 56 | Ga0209489_101612 | 3300027361 | Bacteria | 46456 |
| 57 | Ga0209489_102145 | 3300027361 | Bacteria | 40414 |
| 58 | Ga0209700_100002 | 3300027363 | Bacteria | 708598 |
| 59 | Ga0268266_10006506 | 3300028379 | Bacteria | 10689 |
| 60 | Ga0268256_1000013 | 3300030500 | Bacteria | 752103 |
| 61 | Ga0268256_1003477 | 3300030500 | Bacteria | 7071 |
| 62 | Ga0265314_10000093 | 3300031711 | Bacteria | 136857 |
| 63 | Ga0307416_100008533 | 3300032002 | Bacteria | 6622 |
| 64 | Ga0307416_100065194 | 3300032002 | Bacteria | 2992 |
| 65 | Ga0395899_0015119 | 3300037312 | Bacteria | 5884 |
| 66 | Ga0395900_0060325 | 3300037418 | Bacteria | 3904 |
| 67 | Ga0395905_0020409 | 3300037471 | Bacteria | 6276 |
| 68 | Ga0395905_0037982 | 3300037471 | Bacteria | 4518 |
| 69 | Ga0436364_0576881 | 3300037853 | Bacteria | 6263 |
| 70 | Ga0436364_0814498 | 3300037853 | Bacteria | 116488 |
| 71 | Ga0436364_1111470 | 3300037853 | Bacteria | 15960 |
| 72 | Ga0395901_0014156 | 3300038443 | Bacteria | 8121 |
| 73 | Ga0395901_0050219 | 3300038443 | Bacteria | 4334 |
| 74 | Ga0395901_0132902 | 3300038443 | Bacteria | 2615 |
| 75 | Ga0436365_0619646 | 3300039437 | Bacteria | 30514 |
| 76 | Ga0436365_0695157 | 3300039437 | Bacteria | 511493 |
| 77 | Ga0436365_1343781 | 3300039437 | Bacteria | 2754 |
| 78 | Ga0436365_1600837 | 3300039437 | Bacteria | 192134 |
| 79 | Ga0436360_0312597 | 3300039438 | Bacteria | 4734 |
| 80 | Ga0436363_0418212 | 3300039450 | Bacteria | 12853 |
| 81 | Ga0436362_0298033 | 3300039453 | Bacteria | 2502 |
| 82 | Ga0439465_0002068 | 3300041413 | Bacteria | 6582 |
| 83 | Ga0451837_0445130 | 3300041494 | Bacteria | 3510 |
| 84 | Ga0451843_0469306 | 3300041509 | Bacteria | 13712 |
| 85 | Ga0451853_0229999 | 3300041512 | Bacteria | 22413 |
| 86 | Ga0466959_0086789 | 3300045049 | Bacteria | 2251 |
| 87 | Ga0495606_0003383 | 3300046507 | Bacteria | 16964 |
| 88 | Ga0495632_0005772 | 3300046519 | Bacteria | 8123 |
| 89 | Ga0495643_0005400 | 3300046522 | Bacteria | 8652 |
| 90 | Ga0495597_0002207 | 3300046542 | Bacteria | 12762 |
| 91 | Ga0495668_0001913 | 3300046616 | Bacteria | 18551 |
| 92 | Ga0495625_0004703 | 3300046660 | Bacteria | 12784 |
| 93 | Ga0495649_0000467 | 3300046694 | Bacteria | 34802 |
| 94 | Ga0495660_0001315 | 3300046810 | Bacteria | 17181 |
| 95 | Ga0495686_0002883 | 3300047472 | Bacteria | 15439 |
| 96 | Ga0495626_0023192 | 3300048091 | Bacteria | 3059 |
| 97 | Ga0496112_0021336 | 3300048915 | Bacteria | 6159 |
| 98 | Ga0496112_0134281 | 3300048915 | Bacteria | 2445 |
| 99 | Ga0501034_0027467 | 3300049571 | Bacteria | 5789 |
| 100 | Ga0501047_0009415 | 3300049581 | Bacteria | 9229 |
| 101 | Ga0501070_0006675 | 3300049586 | Bacteria | 9829 |
| 102 | Ga0501080_0104107 | 3300049742 | Bacteria | 2632 |
| 103 | Ga0501044_0050619 | 3300049823 | Bacteria | 4285 |
| 104 | nmdc:mga0n895_19880_c1 | 3300050512 | Bacteria | 6252 |
| 105 | Ga0500658_0004858 | 3300053134 | Bacteria | 5014 |
| 106 | Ga0500616_0000432 | 3300053153 | Bacteria | 55714 |
| 107 | Ga0500622_0000064 | 3300053156 | Bacteria | 127531 |
| 108 | Ga0501082_0000272 | 3300060353 | Bacteria | 45665 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300037853 | Ga0436364_0576881 | Ga0436364_0576881_4360_6069 | 556 |
| 2 | iso_pu_bacteria | 8056673599 | 8056676609 | 562 |
| 3 | iso_pu_bacteria | 2924762789 | 2924763204 | 570 |
| 4 | 3300014497 | Ga0182008_10000308 | Ga0182008_1000030826 | 597 |
| 5 | 3300015261 | Ga0182006_1017752 | Ga0182006_10177522 | 597 |
| 6 | 3300015262 | Ga0182007_10000192 | Ga0182007_1000019212 | 597 |
| 7 | 3300032002 | Ga0307416_100008533 | Ga0307416_1000085335 | 612 |
| 8 | 3300037471 | Ga0395905_0037982 | Ga0395905_0037982_1117_3000 | 613 |
| 9 | 3300038443 | Ga0395901_0050219 | Ga0395901_0050219_1672_3555 | 613 |
| 10 | 3300025921 | Ga0207652_10035232 | Ga0207652_100352325 | 617 |
| 11 | 3300060353 | Ga0501082_0000272 | Ga0501082_0000272_16969_18882 | 621 |
| 12 | 3300006871 | Ga0075434_100000641 | Ga0075434_1000006412 | 623 |
| 13 | 3300037418 | Ga0395900_0060325 | Ga0395900_0060325_1126_3081 | 623 |
| 14 | 3300037471 | Ga0395905_0020409 | Ga0395905_0020409_3763_5658 | 623 |
| 15 | 3300038443 | Ga0395901_0132902 | Ga0395901_0132902_257_2212 | 623 |
| 16 | 3300050512 | nmdc:mga0n895_19880_c1 | nmdc:mga0n895_19880_c1_126_2036 | 623 |
| 17 | 3300039437 | Ga0436365_0619646 | Ga0436365_0619646_22638_24551 | 625 |
| 18 | 3300039450 | Ga0436363_0418212 | Ga0436363_0418212_1777_3690 | 625 |
| 19 | iso_pu_bacteria | 2585427633 | 2585996001 | 625 |
| 20 | 3300021384 | Ga0213876_10000006 | Ga0213876_10000006169 | 626 |
| 21 | 3300037312 | Ga0395899_0015119 | Ga0395899_0015119_3057_4970 | 626 |
| 22 | 3300039437 | Ga0436365_0695157 | Ga0436365_0695157_480656_482647 | 626 |
| 23 | 3300009545 | Ga0105237_10135093 | Ga0105237_101350931 | 628 |
| 24 | 3300005548 | Ga0070665_100000770 | Ga0070665_10000077026 | 630 |
| 25 | 3300028379 | Ga0268266_10006506 | Ga0268266_100065069 | 630 |
| 26 | 3300032002 | Ga0307416_100065194 | Ga0307416_1000651942 | 630 |
| 27 | 3300038443 | Ga0395901_0014156 | Ga0395901_0014156_2266_4179 | 630 |
| 28 | 3300021384 | Ga0213876_10033542 | Ga0213876_100335422 | 631 |
| 29 | 3300021388 | Ga0213875_10000015 | Ga0213875_1000001579 | 631 |
| 30 | 3300037853 | Ga0436364_0814498 | Ga0436364_0814498_93407_95314 | 631 |
| 31 | 3300039437 | Ga0436365_1343781 | Ga0436365_1343781_42_1946 | 631 |
| 32 | iso_pu_bacteria | 2513237092 | 2513626599 | 631 |
| 33 | iso_pu_bacteria | 2517093000 | 2517099868 | 631 |
| 34 | iso_pu_bacteria | 2856320880 | 2856324906 | 631 |
| 35 | iso_pu_bacteria | 2857516855 | 2857521286 | 631 |
| 36 | iso_pu_bacteria | 2869278585 | 2869281041 | 631 |
| 37 | iso_pu_bacteria | 2874139085 | 2874141292 | 631 |
| 38 | iso_pu_bacteria | 2878738818 | 2878743017 | 631 |
| 39 | iso_pu_bacteria | 2888337043 | 2888338757 | 631 |
| 40 | iso_pu_bacteria | 2922361189 | 2922367170 | 631 |
| 41 | iso_pu_bacteria | 2924718760 | 2924719163 | 631 |
| 42 | iso_pu_bacteria | 2924776078 | 2924780816 | 631 |
| 43 | iso_pu_bacteria | 2937877337 | 2937879551 | 631 |
| 44 | iso_pu_bacteria | 2937972304 | 2937974806 | 631 |
| 45 | iso_pu_bacteria | 2958034702 | 2958037004 | 631 |
| 46 | iso_pu_bacteria | 2958041894 | 2958050627 | 631 |
| 47 | iso_pu_bacteria | 2958084443 | 2958086726 | 631 |
| 48 | iso_pu_bacteria | 2958144490 | 2958148759 | 631 |
| 49 | iso_pu_bacteria | 2968016561 | 2968020169 | 631 |
| 50 | iso_pu_bacteria | 2970469710 | 2970473491 | 631 |
| 51 | iso_pu_bacteria | 2970593180 | 2970595645 | 631 |
| 52 | iso_pu_bacteria | 2996348954 | 2996351373 | 631 |
| 53 | iso_pu_bacteria | 3000135777 | 3000138199 | 631 |
| 54 | iso_pu_bacteria | 3004275668 | 3004278071 | 631 |
| 55 | iso_pu_bacteria | 3004289098 | 3004294574 | 631 |
| 56 | iso_pu_bacteria | 3005409236 | 3005416588 | 631 |
| 57 | iso_pu_bacteria | 8006994254 | 8007001233 | 631 |
| 58 | iso_pu_bacteria | 2791355259 | 2793317074 | 632 |
| 59 | iso_pu_bacteria | 2818991439 | 2819561997 | 632 |
| 60 | iso_pu_bacteria | 2838022645 | 2838024693 | 632 |
| 61 | iso_pu_bacteria | 2842198810 | 2842200202 | 632 |
| 62 | iso_pu_bacteria | 2842775625 | 2842776725 | 632 |
| 63 | iso_pu_bacteria | 2937822353 | 2937825619 | 632 |
| 64 | iso_pu_bacteria | 2984509177 | 2984510979 | 632 |
| 65 | iso_pu_bacteria | 2984518228 | 2984518319 | 632 |
| 66 | iso_pu_bacteria | 2984537506 | 2984539330 | 632 |
| 67 | iso_pu_bacteria | 2984601300 | 2984606036 | 632 |
| 68 | iso_pu_bacteria | 2508501128 | 2509152037 | 633 |
| 69 | iso_pu_bacteria | 2513237088 | 2513597790 | 633 |
| 70 | iso_pu_bacteria | 2513237098 | 2513671291 | 633 |
| 71 | iso_pu_bacteria | 2516653077 | 2517042816 | 633 |
| 72 | iso_pu_bacteria | 2524023209 | 2524457403 | 633 |
| 73 | iso_pu_bacteria | 2585427526 | 2585530157 | 633 |
| 74 | iso_pu_bacteria | 2718217882 | 2719184584 | 633 |
| 75 | iso_pu_bacteria | 2718217997 | 2719668566 | 633 |
| 76 | iso_pu_bacteria | 2718218009 | 2719728604 | 633 |
| 77 | iso_pu_bacteria | 2718218199 | 2720489259 | 633 |
| 78 | iso_pu_bacteria | 2718218232 | 2720609940 | 633 |
| 79 | iso_pu_bacteria | 2718218233 | 2720617364 | 633 |
| 80 | iso_pu_bacteria | 2718218235 | 2720628510 | 633 |
| 81 | iso_pu_bacteria | 2718218269 | 2720772459 | 633 |
| 82 | iso_pu_bacteria | 2718218363 | 2721144295 | 633 |
| 83 | iso_pu_bacteria | 2718218365 | 2721161088 | 633 |
| 84 | iso_pu_bacteria | 2718218366 | 2721161665 | 633 |
| 85 | iso_pu_bacteria | 2721755514 | 2722842810 | 633 |
| 86 | iso_pu_bacteria | 2721755556 | 2723029895 | 633 |
| 87 | iso_pu_bacteria | 2721755684 | 2723564304 | 633 |
| 88 | iso_pu_bacteria | 2721755685 | 2723570055 | 633 |
| 89 | iso_pu_bacteria | 2721755810 | 2724041629 | 633 |
| 90 | iso_pu_bacteria | 2721755819 | 2724092488 | 633 |
| 91 | iso_pu_bacteria | 2721755822 | 2724101602 | 633 |
| 92 | iso_pu_bacteria | 2721755823 | 2724112865 | 633 |
| 93 | iso_pu_bacteria | 2728369352 | 2730110428 | 633 |
| 94 | iso_pu_bacteria | 2728369365 | 2730160699 | 633 |
| 95 | iso_pu_bacteria | 2728369397 | 2730301196 | 633 |
| 96 | iso_pu_bacteria | 2791355264 | 2793345474 | 633 |
| 97 | iso_pu_bacteria | 2818991448 | 2819610815 | 633 |
| 98 | iso_pu_bacteria | 2838016132 | 2838016229 | 633 |
| 99 | iso_pu_bacteria | 2838048938 | 2838049681 | 633 |
| 100 | iso_pu_bacteria | 2838061910 | 2838061948 | 633 |
| 101 | iso_pu_bacteria | 2838068647 | 2838068762 | 633 |
| 102 | iso_pu_bacteria | 2838074704 | 2838078406 | 633 |
| 103 | iso_pu_bacteria | 2842264693 | 2842265099 | 633 |
| 104 | iso_pu_bacteria | 2842285085 | 2842288190 | 633 |
| 105 | iso_pu_bacteria | 2842298080 | 2842299040 | 633 |
| 106 | iso_pu_bacteria | 2842311132 | 2842315718 | 633 |
| 107 | iso_pu_bacteria | 2842357229 | 2842358505 | 633 |
| 108 | iso_pu_bacteria | 2842402390 | 2842405456 | 633 |
| 109 | iso_pu_bacteria | 2842409023 | 2842411787 | 633 |
| 110 | iso_pu_bacteria | 2842415677 | 2842418686 | 633 |
| 111 | iso_pu_bacteria | 2842422224 | 2842422908 | 633 |
| 112 | iso_pu_bacteria | 2842428310 | 2842428847 | 633 |
| 113 | iso_pu_bacteria | 2842434925 | 2842435460 | 633 |
| 114 | iso_pu_bacteria | 2842441272 | 2842441677 | 633 |
| 115 | iso_pu_bacteria | 2842447887 | 2842448281 | 633 |
| 116 | iso_pu_bacteria | 2842462802 | 2842463271 | 633 |
| 117 | iso_pu_bacteria | 2842469257 | 2842469791 | 633 |
| 118 | iso_pu_bacteria | 2847939898 | 2847942520 | 633 |
| 119 | iso_pu_bacteria | 2881364244 | 2881366447 | 633 |
| 120 | iso_pu_bacteria | 2881665667 | 2881673001 | 633 |
| 121 | iso_pu_bacteria | 2903768456 | 2903768706 | 633 |
| 122 | iso_pu_bacteria | 2929199973 | 2929206197 | 633 |
| 123 | iso_pu_bacteria | 2933599457 | 2933600380 | 633 |
| 124 | iso_pu_bacteria | 2996887358 | 2996893187 | 633 |
| 125 | iso_pu_bacteria | 3005483717 | 3005489967 | 633 |
| 126 | iso_pu_bacteria | 3005587118 | 3005590341 | 633 |
| 127 | iso_pu_bacteria | 8005282627 | 8005288604 | 633 |
| 128 | iso_pu_bacteria | 8005314921 | 8005320201 | 633 |
| 129 | iso_pu_bacteria | 8005321885 | 8005327714 | 633 |
| 130 | iso_pu_bacteria | 8005382845 | 8005384289 | 633 |
| 131 | iso_pu_bacteria | 8005395548 | 8005401640 | 633 |
| 132 | iso_pu_bacteria | 8005430974 | 8005431523 | 633 |
| 133 | iso_pu_bacteria | 8005497431 | 8005502815 | 633 |
| 134 | iso_pu_bacteria | 8005619151 | 8005623963 | 633 |
| 135 | iso_pu_bacteria | 8005626139 | 8005629228 | 633 |
| 136 | iso_pu_bacteria | 8005645114 | 8005651462 | 633 |
| 137 | iso_pu_bacteria | 8005668836 | 8005674245 | 633 |
| 138 | iso_pu_bacteria | 8056375014 | 8056378735 | 633 |
| 139 | 3300013105 | Ga0157369_10054929 | Ga0157369_100549292 | 634 |
| 140 | 3300009765 | Ga0123341_1000010 | Ga0123341_100001046 | 635 |
| 141 | 3300011119 | Ga0105246_10080857 | Ga0105246_100808572 | 635 |
| 142 | 3300027312 | Ga0209371_1000012 | Ga0209371_1000012535 | 635 |
| 143 | 3300027357 | Ga0209589_1000002 | Ga0209589_1000002355 | 635 |
| 144 | 3300027361 | Ga0209489_100002 | Ga0209489_100002355 | 635 |
| 145 | 3300027363 | Ga0209700_100002 | Ga0209700_100002355 | 635 |
| 146 | 3300030500 | Ga0268256_1000013 | Ga0268256_1000013536 | 635 |
| 147 | 3300041494 | Ga0451837_0445130 | Ga0451837_0445130_815_2722 | 635 |
| 148 | 3300041509 | Ga0451843_0469306 | Ga0451843_0469306_7710_9617 | 635 |
| 149 | 3300041512 | Ga0451853_0229999 | Ga0451853_0229999_7678_9585 | 635 |
| 150 | 3300048915 | Ga0496112_0134281 | Ga0496112_0134281_212_2140 | 635 |
| 151 | 3300002739 | JGI25158J39367_1000201 | JGI25158J39367_10002014 | 636 |
| 152 | 3300002773 | JGI25152J39213_1005785 | JGI25152J39213_10057853 | 636 |
| 153 | 3300003215 | JGI25153J46596_10000135 | JGI25153J46596_1000013548 | 636 |
| 154 | 3300003374 | JGI25161J50226_1000029 | JGI25161J50226_1000029153 | 636 |
| 155 | 3300003771 | Ga0055526_1008376 | Ga0055526_10083764 | 636 |
| 156 | 3300003775 | Ga0055524_1005617 | Ga0055524_10056176 | 636 |
| 157 | 3300003792 | Ga0055540_1000273 | Ga0055540_100027340 | 636 |
| 158 | 3300003794 | Ga0055531_10000106 | Ga0055531_1000010616 | 636 |
| 159 | 3300004625 | Ga0055543_1000016 | Ga0055543_100001694 | 636 |
| 160 | 3300005436 | Ga0070713_100024035 | Ga0070713_1000240355 | 636 |
| 161 | 3300005458 | Ga0070681_10036013 | Ga0070681_100360135 | 636 |
| 162 | 3300006028 | Ga0070717_10019325 | Ga0070717_100193253 | 636 |
| 163 | 3300006946 | Ga0079104_1000373 | Ga0079104_100037319 | 636 |
| 164 | 3300009093 | Ga0105240_10044225 | Ga0105240_100442254 | 636 |
| 165 | 3300009093 | Ga0105240_10241522 | Ga0105240_102415222 | 636 |
| 166 | 3300021384 | Ga0213876_10000350 | Ga0213876_1000035010 | 636 |
| 167 | 3300021388 | Ga0213875_10011415 | Ga0213875_100114152 | 636 |
| 168 | 3300025208 | Ga0209436_100015 | Ga0209436_100015136 | 636 |
| 169 | 3300025245 | Ga0207425_1004792 | Ga0207425_10047922 | 636 |
| 170 | 3300025258 | Ga0209129_1001214 | Ga0209129_100121418 | 636 |
| 171 | 3300025261 | Ga0209233_1001741 | Ga0209233_10017416 | 636 |
| 172 | 3300025273 | Ga0209673_1005474 | Ga0209673_10054747 | 636 |
| 173 | 3300025284 | Ga0209130_1000051 | Ga0209130_1000051117 | 636 |
| 174 | 3300025294 | Ga0209025_1000496 | Ga0209025_100049673 | 636 |
| 175 | 3300025295 | Ga0209564_1001417 | Ga0209564_100141727 | 636 |
| 176 | 3300025297 | Ga0209758_1000154 | Ga0209758_100015463 | 636 |
| 177 | 3300025299 | Ga0209256_1011207 | Ga0209256_10112073 | 636 |
| 178 | 3300025302 | Ga0207426_1000043 | Ga0207426_1000043335 | 636 |
| 179 | 3300025303 | Ga0209051_1000192 | Ga0209051_1000192101 | 636 |
| 180 | 3300025304 | Ga0209257_1000300 | Ga0209257_100030016 | 636 |
| 181 | 3300025912 | Ga0207707_10016368 | Ga0207707_100163684 | 636 |
| 182 | 3300025912 | Ga0207707_10028005 | Ga0207707_100280052 | 636 |
| 183 | 3300025917 | Ga0207660_10076251 | Ga0207660_100762512 | 636 |
| 184 | 3300025921 | Ga0207652_10041645 | Ga0207652_100416452 | 636 |
| 185 | 3300025928 | Ga0207700_10052449 | Ga0207700_100524492 | 636 |
| 186 | 3300027111 | Ga0209281_1000108 | Ga0209281_1000108203 | 636 |
| 187 | 3300027296 | Ga0209389_1000189 | Ga0209389_100018932 | 636 |
| 188 | 3300027296 | Ga0209389_1000216 | Ga0209389_100021626 | 636 |
| 189 | 3300027357 | Ga0209589_1000845 | Ga0209589_100084532 | 636 |
| 190 | 3300027361 | Ga0209489_101612 | Ga0209489_10161232 | 636 |
| 191 | 3300027361 | Ga0209489_102145 | Ga0209489_10214526 | 636 |
| 192 | 3300030500 | Ga0268256_1003477 | Ga0268256_10034773 | 636 |
| 193 | 3300031711 | Ga0265314_10000093 | Ga0265314_1000009385 | 636 |
| 194 | 3300037853 | Ga0436364_1111470 | Ga0436364_1111470_1961_3874 | 636 |
| 195 | 3300039437 | Ga0436365_1600837 | Ga0436365_1600837_161480_163552 | 636 |
| 196 | 3300039438 | Ga0436360_0312597 | Ga0436360_0312597_1382_3295 | 636 |
| 197 | 3300039453 | Ga0436362_0298033 | Ga0436362_0298033_491_2404 | 636 |
| 198 | 3300041413 | Ga0439465_0002068 | Ga0439465_0002068_1363_3273 | 636 |
| 199 | 3300045049 | Ga0466959_0086789 | Ga0466959_0086789_124_2037 | 636 |
| 200 | 3300046507 | Ga0495606_0003383 | Ga0495606_0003383_7143_9056 | 636 |
| 201 | 3300046519 | Ga0495632_0005772 | Ga0495632_0005772_595_2508 | 636 |
| 202 | 3300046522 | Ga0495643_0005400 | Ga0495643_0005400_6390_8303 | 636 |
| 203 | 3300046542 | Ga0495597_0002207 | Ga0495597_0002207_5564_7477 | 636 |
| 204 | 3300046616 | Ga0495668_0001913 | Ga0495668_0001913_4564_6477 | 636 |
| 205 | 3300046660 | Ga0495625_0004703 | Ga0495625_0004703_4475_6388 | 636 |
| 206 | 3300046694 | Ga0495649_0000467 | Ga0495649_0000467_25487_27400 | 636 |
| 207 | 3300046810 | Ga0495660_0001315 | Ga0495660_0001315_7927_9840 | 636 |
| 208 | 3300047472 | Ga0495686_0002883 | Ga0495686_0002883_6819_8732 | 636 |
| 209 | 3300048091 | Ga0495626_0023192 | Ga0495626_0023192_790_2703 | 636 |
| 210 | 3300048915 | Ga0496112_0021336 | Ga0496112_0021336_3911_5824 | 636 |
| 211 | 3300049571 | Ga0501034_0027467 | Ga0501034_0027467_632_2545 | 636 |
| 212 | 3300049581 | Ga0501047_0009415 | Ga0501047_0009415_3143_5056 | 636 |
| 213 | 3300049586 | Ga0501070_0006675 | Ga0501070_0006675_2946_4859 | 636 |
| 214 | 3300049742 | Ga0501080_0104107 | Ga0501080_0104107_26_1939 | 636 |
| 215 | 3300049823 | Ga0501044_0050619 | Ga0501044_0050619_944_2857 | 636 |
| 216 | 3300053134 | Ga0500658_0004858 | Ga0500658_0004858_136_2049 | 636 |
| 217 | 3300053153 | Ga0500616_0000432 | Ga0500616_0000432_35123_37036 | 636 |
| 218 | 3300053156 | Ga0500622_0000064 | Ga0500622_0000064_106941_108854 | 636 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3abk-assembly1.cif.gz_A | bovine heart cytochrome c oxidase at the no-bound fully reduced state (50k) | 0.9513 | 37 | 541 |
| 8d4t-assembly1.cif.gz_N | mammalian civ with gdn bound | 0.9512 | 37 | 541 |
| 1fft-assembly2.cif.gz_F | the structure of ubiquinol oxidase from escherichia coli | 0.9507 | 41 | 535 |
| 7jrp-assembly1.cif.gz_a | plant mitochondrial complex sc iii2+iv from vigna radiata | 0.9494 | 37 | 543 |
| 7vuw-assembly2.cif.gz_N | bovine heart cytochrome c oxidase in the cyanide-bound fully oxidized state at 50 k | 0.9453 | 37 | 541 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q2FZK0_30_556_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9595 | 37 | 539 | 1.20.210.10 |
| af_P9WP71_20_544_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9571 | 30 | 549 | 1.20.210.10 |
| af_Q9ZZX1_1_342_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.95 | 40 | 359 | 1.20.210.10 |
| 2yevD01 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9489 | 33 | 549 | 1.20.210.10 |
| af_Q7HP04_41_512_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9476 | 34 | 498 | 1.20.210.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A2V7WMY2-F1-model_v4 | Cytochrome c oxidase subunit 1 (EC 7.1.1.9) | 0.9763 | 15 | 636 |
GO:0004129
GO:0005886 GO:0006119 GO:0015990 GO:0020037 GO:0022904 GO:0046872 |
| AF-A0A2V7WMY2-F1-model_v4 | Cytochrome c oxidase subunit 1 (EC 7.1.1.9) | 0.9716 | 15 | 636 |
GO:0004129
GO:0005886 GO:0006119 GO:0015990 GO:0020037 GO:0022904 GO:0046872 |
| AF-A0A538FF23-F1-model_v4 | Cytochrome c oxidase subunit 1 (EC 7.1.1.9) | 0.9648 | 16 | 553 |
GO:0004129
GO:0005886 GO:0006119 GO:0015990 GO:0020037 GO:0022904 GO:0046872 |
| AF-A0A3D0MK67-F1-model_v4 | deleted | 0.9621 | 150 | 548 |
|
| AF-A0A2H6B1A9-F1-model_v4 | Cytochrome c oxidase subunit 1 (EC 7.1.1.9) | 0.961 | 28 | 541 |
GO:0004129
GO:0005886 GO:0006119 GO:0015990 GO:0020037 GO:0022904 GO:0045277 GO:0046872 |
Predicted Structure (AlphaFold2)
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