F325840

General Info

Members Datasets Scaffolds Average Seq Length
214 143 428 298

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2799112218|2799186737
Length 359
Sequence QRALRLGTRRSALALAQSGAVAAALTAATGRPVELVEVTTFGDVSRAALAQIGGTGVFVGALREALVSGQVDLAVHSLKDLPTAPARGVALAAVPEREDPRDALVARDGLTLAELPPGARIGSGSPRRAAQLAALGLGHEVVPIRGNVDTRLRLVTDGELDAVVLARAGLVRLGRADAVTEVLDPLQMLPAPGQGALALECRSDDAETAALCAALESAPTRLAVLAERSVLAALEAGCSAPVGALAEVGEGDDGVDELYLRALVAAPDGHVLRLPVTGPVPDAASAAALGRRLAADLLAAGAADLVPALSSALSPALASREPPAPPAPPLHPGASSTPLPDAPATHLPGMPGPLPGERV

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
59 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
86 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
87 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
88 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
89 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
90 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
91 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
92 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
93 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
94 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
95 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
96 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
97 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
98 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
99 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
100 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
101 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
102 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
103 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
104 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
105 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
106 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
107 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
108 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
109 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
110 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
111 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
112 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
113 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
114 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
115 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
116 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
117 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
118 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
119 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
120 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
129 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
130 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
132 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
138 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
139 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
140 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
141 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
142 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
143 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 97.2
Metatranscriptomes 0
Isolates 2.8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.93
Nodule 0.47
Rhizoplane 0.93
Rhizosphere 96.73
Stem 0
Stem Tuber 0
Unclassified 3.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100063154 3300005329 Bacteria 3444
2 Ga0070666_10007896 3300005335 Bacteria 6575
3 Ga0070666_10023267 3300005335 Bacteria 4033
4 Ga0070666_10229307 3300005335 Bacteria 1311
5 Ga0068868_100023825 3300005338 Bacteria 4636
6 Ga0070661_100182075 3300005344 Bacteria 1599
7 Ga0070675_100044394 3300005354 Bacteria 3635
8 Ga0070671_100023626 3300005355 Bacteria 5033
9 Ga0070674_100380548 3300005356 Bacteria 1148
10 Ga0070659_100107666 3300005366 Unclassified 2248
11 Ga0070659_100515727 3300005366 Unclassified 1020
12 Ga0070667_100005237 3300005367 Bacteria 10840
13 Ga0070667_100011293 3300005367 Bacteria 7388
14 Ga0070709_10092910 3300005434 Bacteria 1993
15 Ga0070709_10109843 3300005434 Bacteria 1852
16 Ga0070709_10173281 3300005434 Bacteria 1510
17 Ga0070714_100017856 3300005435 Bacteria 5753
18 Ga0070713_100008628 3300005436 Bacteria 7242
19 Ga0070678_100001593 3300005456 Bacteria 12143
20 Ga0070681_10034121 3300005458 Bacteria 5110
21 Ga0070681_10193372 3300005458 Bacteria 1954
22 Ga0068867_100143121 3300005459 Unclassified 1871
23 Ga0070706_100002659 3300005467 Bacteria 17910
24 Ga0070699_100001818 3300005518 Bacteria 19394
25 Ga0070699_100227251 3300005518 Bacteria 1664
26 Ga0070684_100032281 3300005535 Bacteria 4461
27 Ga0070684_100302005 3300005535 Bacteria 1469
28 Ga0070697_100113473 3300005536 Bacteria 2261
29 Ga0070697_100393850 3300005536 Bacteria 1201
30 Ga0070672_100009779 3300005543 Bacteria 6624
31 Ga0070693_100170954 3300005547 Bacteria 1392
32 Ga0070693_100265869 3300005547 Bacteria 1143
33 Ga0070665_100003399 3300005548 Bacteria 17013
34 Ga0070665_100123838 3300005548 Bacteria 2587
35 Ga0070704_100287910 3300005549 Bacteria 1364
36 Ga0068855_100110673 3300005563 Bacteria 3152
37 Ga0068855_100112241 3300005563 Unclassified 3128
38 Ga0068855_100156639 3300005563 Bacteria 2587
39 Ga0068855_100371667 3300005563 Bacteria 1571
40 Ga0068857_100011882 3300005577 Bacteria 7574
41 Ga0068857_100023354 3300005577 Bacteria 5443
42 Ga0068856_100022254 3300005614 Bacteria 6163
43 Ga0068856_100066093 3300005614 Bacteria 3573
44 Ga0068856_100475000 3300005614 Bacteria 1271
45 Ga0068852_100162856 3300005616 Bacteria 2084
46 Ga0068859_100072882 3300005617 Bacteria 3472
47 Ga0068864_100009184 3300005618 Bacteria 8150
48 Ga0068858_100181294 3300005842 Bacteria 1989
49 Ga0068860_100006624 3300005843 Bacteria 11631
50 Ga0070717_10025808 3300006028 Bacteria 4680
51 Ga0097621_100058307 3300006237 Bacteria 3159
52 Ga0097621_100060404 3300006237 Bacteria 3107
53 Ga0097621_100104439 3300006237 Bacteria 2387
54 Ga0068871_100010420 3300006358 Bacteria 6782
55 Ga0068871_100012079 3300006358 Bacteria 6357
56 Ga0068871_100134791 3300006358 Bacteria 2097
57 Ga0075434_100030019 3300006871 Bacteria 5351
58 Ga0075436_100029415 3300006914 Bacteria 3778
59 Ga0097620_100072879 3300006931 Bacteria 3472
60 Ga0105240_10005160 3300009093 Bacteria 19533
61 Ga0105240_10078553 3300009093 Bacteria 4064
62 Ga0105240_10173163 3300009093 Bacteria 2554
63 Ga0105240_10307610 3300009093 Bacteria 1811
64 Ga0105240_10682341 3300009093 Bacteria 1123
65 Ga0105240_10712002 3300009093 Archaea 1095
66 Ga0111539_10000272 3300009094 Bacteria 61744
67 Ga0105245_10011638 3300009098 Bacteria 7658
68 Ga0105245_10022114 3300009098 Bacteria 5584
69 Ga0105245_10334585 3300009098 Bacteria 1496
70 Ga0105243_10149134 3300009148 Bacteria 2004
71 Ga0105241_10005888 3300009174 Bacteria 9049
72 Ga0105241_10166492 3300009174 Bacteria 1817
73 Ga0105242_10085078 3300009176 Bacteria 2651
74 Ga0105242_10302091 3300009176 Bacteria 1461
75 Ga0105248_10015970 3300009177 Bacteria 8267
76 Ga0105248_10408087 3300009177 Bacteria 1530
77 Ga0105248_10815847 3300009177 Unclassified 1053
78 Ga0105237_10190481 3300009545 Bacteria 2051
79 Ga0105238_10004308 3300009551 Bacteria 14118
80 Ga0105238_10081174 3300009551 Bacteria 3232
81 Ga0105238_10095993 3300009551 Bacteria 2951
82 Ga0105238_10363326 3300009551 Bacteria 1437
83 Ga0105239_10805999 3300010375 Bacteria 1076
84 Ga0105246_10188874 3300011119 Bacteria 1593
85 Ga0157370_10005787 3300013104 Bacteria 13815
86 Ga0157370_10343267 3300013104 Bacteria 1376
87 Ga0157369_10222881 3300013105 Bacteria 1973
88 Ga0157369_10401861 3300013105 Bacteria 1421
89 Ga0157374_10076466 3300013296 Bacteria 3166
90 Ga0157374_10131788 3300013296 Bacteria 2419
91 Ga0157374_10413394 3300013296 Bacteria 1347
92 Ga0157378_10053149 3300013297 Unclassified 3606
93 Ga0157378_10066817 3300013297 Bacteria 3221
94 Ga0163162_10033028 3300013306 Bacteria 5140
95 Ga0163162_10202550 3300013306 Bacteria 2114
96 Ga0163162_10323843 3300013306 Bacteria 1674
97 Ga0163162_10833069 3300013306 Bacteria 1038
98 Ga0157372_10157119 3300013307 Bacteria 2627
99 Ga0157375_10010577 3300013308 Bacteria 8124
100 Ga0163163_10002916 3300014325 Bacteria 14461
101 Ga0163163_10089295 3300014325 Bacteria 3094
102 Ga0163163_10239541 3300014325 Bacteria 1864
103 Ga0157379_10112836 3300014968 Bacteria 2443
104 Ga0157379_10223046 3300014968 Bacteria 1708
105 Ga0157376_10014614 3300014969 Bacteria 5898
106 Ga0207680_10010948 3300025903 Bacteria 4560
107 Ga0207680_10014964 3300025903 Bacteria 4035
108 Ga0207680_10048504 3300025903 Bacteria 2523
109 Ga0207705_10202153 3300025909 Bacteria 1505
110 Ga0207654_10003791 3300025911 Bacteria 7623
111 Ga0207654_10112228 3300025911 Bacteria 1698
112 Ga0207707_10017920 3300025912 Bacteria 6174
113 Ga0207707_10306357 3300025912 Bacteria 1373
114 Ga0207695_10029632 3300025913 Bacteria 6041
115 Ga0207695_10043137 3300025913 Bacteria 4810
116 Ga0207695_10073636 3300025913 Bacteria 3480
117 Ga0207671_10039489 3300025914 Bacteria 3494
118 Ga0207657_10024899 3300025919 Bacteria 5531
119 Ga0207646_10335167 3300025922 Bacteria 1367
120 Ga0207694_10070581 3300025924 Bacteria 2729
121 Ga0207694_10288860 3300025924 Bacteria 1348
122 Ga0207700_10548082 3300025928 Unclassified 1026
123 Ga0207644_10021992 3300025931 Bacteria 4351
124 Ga0207690_10173118 3300025932 Bacteria 1619
125 Ga0207709_10222996 3300025935 Bacteria 1361
126 Ga0207711_10050666 3300025941 Bacteria 3554
127 Ga0207667_10043405 3300025949 Bacteria 4771
128 Ga0207667_10114231 3300025949 Bacteria 2784
129 Ga0207667_10166194 3300025949 Bacteria 2268
130 Ga0207658_10024425 3300025986 Bacteria 4229
131 Ga0207703_10138295 3300026035 Bacteria 2111
132 Ga0207702_10054040 3300026078 Bacteria 3402
133 Ga0207702_10063216 3300026078 Bacteria 3164
134 Ga0207648_10047253 3300026089 Bacteria 3773
135 Ga0207676_10142080 3300026095 Bacteria 2056
136 Ga0207674_10009551 3300026116 Bacteria 11067
137 Ga0207674_10024927 3300026116 Bacteria 6384
138 Ga0207674_10028369 3300026116 Bacteria 5909
139 Ga0207683_10000261 3300026121 Bacteria 47116
140 Ga0207698_10100733 3300026142 Bacteria 2394
141 Ga0207428_10047013 3300027907 Bacteria 3467
142 Ga0268266_10009254 3300028379 Bacteria 8690
143 Ga0268266_10027879 3300028379 Bacteria 4802
144 Ga0268264_10013189 3300028381 Bacteria 6800
145 Ga0265332_10003496 3300031238 Bacteria 7558
146 Ga0265332_10030931 3300031238 Bacteria 2336
147 Ga0265320_10095393 3300031240 Bacteria 1374
148 Ga0265325_10192998 3300031241 Bacteria 943
149 Ga0265339_10087412 3300031249 Bacteria 1639
150 Ga0265327_10006130 3300031251 Bacteria 9728
151 Ga0265316_10050769 3300031344 Bacteria 3260
152 Ga0316575_10001367 3300031665 Bacteria 7834
153 Ga0265314_10003782 3300031711 Bacteria 14464
154 Ga0265342_10021307 3300031712 Bacteria 4143
155 Ga0316576_10020489 3300031727 Bacteria 4554
156 Ga0316578_10012533 3300031728 Bacteria 4473
157 Ga0316583_10040637 3300032133 Bacteria 1647
158 Ga0373923_0009267 3300035111 Bacteria 3548
159 Ga0373953_0017020 3300035117 Bacteria 2665
160 Ga0373953_0035806 3300035117 Bacteria 1952
161 Ga0373954_0007077 3300035118 Bacteria 4895
162 Ga0373954_0170709 3300035118 Bacteria 1065
163 Ga0373956_0012366 3300035119 Bacteria 3536
164 Ga0316574_0018770 3300035398 Bacteria 4069
165 Ga0373931_0068351 3300035691 Bacteria 1934
166 Ga0373935_0017096 3300035692 Bacteria 4394
167 Ga0373927_0050867 3300035695 Bacteria 2680
168 Ga0373947_0089091 3300035725 Bacteria 1922
169 Ga0373947_0266084 3300035725 Bacteria 1137
170 Ga0373937_0007617 3300036401 Bacteria 9379
171 Ga0373937_0012914 3300036401 Bacteria 7357
172 Ga0316582_0009314 3300036647 Bacteria 5324
173 Ga0373925_0013334 3300037068 Bacteria 5948
174 Ga0373925_0144781 3300037068 Bacteria 1862
175 Ga0373925_0282042 3300037068 Bacteria 1338
176 Ga0395899_0003357 3300037312 Bacteria 12697
177 Ga0400489_71294 3300039093 Bacteria 3173
178 Ga0466966_0009134 3300044684 Bacteria 6565
179 Ga0466961_0022167 3300044693 Bacteria 4086
180 Ga0466963_0214656 3300044694 Bacteria 1347
181 Ga0466958_0126474 3300045836 Bacteria 1603
182 Ga0466967_0068982 3300045976 Bacteria 3159
183 Ga0495651_0115606 3300046462 Bacteria 1978
184 Ga0495580_0008103 3300046472 Bacteria 8381
185 Ga0495613_0044621 3300046689 Bacteria 3279
186 Ga0496112_0285049 3300048915 Bacteria 1598
187 Ga0496113_0007684 3300048916 Bacteria 6957
188 Ga0501034_0038334 3300049571 Bacteria 4853
189 Ga0501036_0002028 3300049572 Bacteria 15762
190 Ga0501037_0010903 3300049573 Bacteria 6679
191 Ga0501037_0050892 3300049573 Bacteria 3031
192 Ga0501038_0022038 3300049574 Bacteria 5713
193 Ga0501043_0000964 3300049579 Bacteria 25420
194 Ga0501047_0007441 3300049581 Bacteria 10304
195 Ga0501047_0080844 3300049581 Bacteria 3124
196 Ga0501047_0096181 3300049581 Bacteria 2840
197 Ga0501048_0001326 3300049582 Bacteria 18749
198 Ga0501074_0000823 3300049590 Bacteria 19671
199 Ga0501081_0083951 3300049743 Bacteria 2233
200 Ga0501044_0004503 3300049823 Bacteria 15582
201 Ga0501044_0543015 3300049823 Bacteria 1060
202 nmdc:mga03683_66272_c1 3300050489 Bacteria 1535
203 nmdc:mga00v17_312975_c1 3300050491 Bacteria 1020
204 nmdc:mga08y16_13425_c1 3300050511 Bacteria 8619
205 nmdc:mga0n895_24938_c1 3300050512 Bacteria 5643
206 nmdc:mga0rr50_411079_c1 3300050513 Bacteria 1144
207 nmdc:mga0a205_386216_c1 3300050515 Bacteria 1265
208 Ga0466962_0031542 3300061719 Bacteria 2537
209 2799186737 2799112218 Bacteria 4315149
210 2731907164 2731639228 Bacteria 4187555
211 2837268881 2837268691 Bacteria 7850704
212 3003000842 3002998708 Bacteria 11715108
213 8053948495 8053945823 Bacteria 8962862
214 8054614292 8054609563 Bacteria 5170090
215 Ga0070683_100063154
216 Ga0070666_10007896
217 Ga0070666_10023267
218 Ga0070666_10229307
219 Ga0068868_100023825
220 Ga0070661_100182075
221 Ga0070675_100044394
222 Ga0070671_100023626
223 Ga0070674_100380548
224 Ga0070659_100107666
225 Ga0070659_100515727
226 Ga0070667_100005237
227 Ga0070667_100011293
228 Ga0070709_10092910
229 Ga0070709_10109843
230 Ga0070709_10173281
231 Ga0070714_100017856
232 Ga0070713_100008628
233 Ga0070678_100001593
234 Ga0070681_10034121
235 Ga0070681_10193372
236 Ga0068867_100143121
237 Ga0070706_100002659
238 Ga0070699_100001818
239 Ga0070699_100227251
240 Ga0070684_100032281
241 Ga0070684_100302005
242 Ga0070697_100113473
243 Ga0070697_100393850
244 Ga0070672_100009779
245 Ga0070693_100170954
246 Ga0070693_100265869
247 Ga0070665_100003399
248 Ga0070665_100123838
249 Ga0070704_100287910
250 Ga0068855_100110673
251 Ga0068855_100112241
252 Ga0068855_100156639
253 Ga0068855_100371667
254 Ga0068857_100011882
255 Ga0068857_100023354
256 Ga0068856_100022254
257 Ga0068856_100066093
258 Ga0068856_100475000
259 Ga0068852_100162856
260 Ga0068859_100072882
261 Ga0068864_100009184
262 Ga0068858_100181294
263 Ga0068860_100006624
264 Ga0070717_10025808
265 Ga0097621_100058307
266 Ga0097621_100060404
267 Ga0097621_100104439
268 Ga0068871_100010420
269 Ga0068871_100012079
270 Ga0068871_100134791
271 Ga0075434_100030019
272 Ga0075436_100029415
273 Ga0097620_100072879
274 Ga0105240_10005160
275 Ga0105240_10078553
276 Ga0105240_10173163
277 Ga0105240_10307610
278 Ga0105240_10682341
279 Ga0105240_10712002
280 Ga0111539_10000272
281 Ga0105245_10011638
282 Ga0105245_10022114
283 Ga0105245_10334585
284 Ga0105243_10149134
285 Ga0105241_10005888
286 Ga0105241_10166492
287 Ga0105242_10085078
288 Ga0105242_10302091
289 Ga0105248_10015970
290 Ga0105248_10408087
291 Ga0105248_10815847
292 Ga0105237_10190481
293 Ga0105238_10004308
294 Ga0105238_10081174
295 Ga0105238_10095993
296 Ga0105238_10363326
297 Ga0105239_10805999
298 Ga0105246_10188874
299 Ga0157370_10005787
300 Ga0157370_10343267
301 Ga0157369_10222881
302 Ga0157369_10401861
303 Ga0157374_10076466
304 Ga0157374_10131788
305 Ga0157374_10413394
306 Ga0157378_10053149
307 Ga0157378_10066817
308 Ga0163162_10033028
309 Ga0163162_10202550
310 Ga0163162_10323843
311 Ga0163162_10833069
312 Ga0157372_10157119
313 Ga0157375_10010577
314 Ga0163163_10002916
315 Ga0163163_10089295
316 Ga0163163_10239541
317 Ga0157379_10112836
318 Ga0157379_10223046
319 Ga0157376_10014614
320 Ga0207680_10010948
321 Ga0207680_10014964
322 Ga0207680_10048504
323 Ga0207705_10202153
324 Ga0207654_10003791
325 Ga0207654_10112228
326 Ga0207707_10017920
327 Ga0207707_10306357
328 Ga0207695_10029632
329 Ga0207695_10043137
330 Ga0207695_10073636
331 Ga0207671_10039489
332 Ga0207657_10024899
333 Ga0207646_10335167
334 Ga0207694_10070581
335 Ga0207694_10288860
336 Ga0207700_10548082
337 Ga0207644_10021992
338 Ga0207690_10173118
339 Ga0207709_10222996
340 Ga0207711_10050666
341 Ga0207667_10043405
342 Ga0207667_10114231
343 Ga0207667_10166194
344 Ga0207658_10024425
345 Ga0207703_10138295
346 Ga0207702_10054040
347 Ga0207702_10063216
348 Ga0207648_10047253
349 Ga0207676_10142080
350 Ga0207674_10009551
351 Ga0207674_10024927
352 Ga0207674_10028369
353 Ga0207683_10000261
354 Ga0207698_10100733
355 Ga0207428_10047013
356 Ga0268266_10009254
357 Ga0268266_10027879
358 Ga0268264_10013189
359 Ga0265332_10003496
360 Ga0265332_10030931
361 Ga0265320_10095393
362 Ga0265325_10192998
363 Ga0265339_10087412
364 Ga0265327_10006130
365 Ga0265316_10050769
366 Ga0316575_10001367
367 Ga0265314_10003782
368 Ga0265342_10021307
369 Ga0316576_10020489
370 Ga0316578_10012533
371 Ga0316583_10040637
372 Ga0373923_0009267
373 Ga0373953_0017020
374 Ga0373953_0035806
375 Ga0373954_0007077
376 Ga0373954_0170709
377 Ga0373956_0012366
378 Ga0316574_0018770
379 Ga0373931_0068351
380 Ga0373935_0017096
381 Ga0373927_0050867
382 Ga0373947_0089091
383 Ga0373947_0266084
384 Ga0373937_0007617
385 Ga0373937_0012914
386 Ga0316582_0009314
387 Ga0373925_0013334
388 Ga0373925_0144781
389 Ga0373925_0282042
390 Ga0395899_0003357
391 Ga0400489_71294
392 Ga0466966_0009134
393 Ga0466961_0022167
394 Ga0466963_0214656
395 Ga0466958_0126474
396 Ga0466967_0068982
397 Ga0495651_0115606
398 Ga0495580_0008103
399 Ga0495613_0044621
400 Ga0496112_0285049
401 Ga0496113_0007684
402 Ga0501034_0038334
403 Ga0501036_0002028
404 Ga0501037_0010903
405 Ga0501037_0050892
406 Ga0501038_0022038
407 Ga0501043_0000964
408 Ga0501047_0007441
409 Ga0501047_0080844
410 Ga0501047_0096181
411 Ga0501048_0001326
412 Ga0501074_0000823
413 Ga0501081_0083951
414 Ga0501044_0004503
415 Ga0501044_0543015
416 nmdc:mga03683_66272_c1
417 nmdc:mga00v17_312975_c1
418 nmdc:mga08y16_13425_c1
419 nmdc:mga0n895_24938_c1
420 nmdc:mga0rr50_411079_c1
421 nmdc:mga0a205_386216_c1
422 Ga0466962_0031542
423 2799186737
424 2731907164
425 2837268881
426 3003000842
427 8053948495
428 8054614292

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01379

Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

4

210

0.98

PF03900

Porphobil_deamC

Porphobilinogen deaminase, C-terminal domain

221

299

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4htg-assembly1.cif.gz_A porphobilinogen deaminase from arabidopsis thaliana 0.9527 2 284
7ccy-assembly2.cif.gz_C crystal structure of the 2-iodoporphobilinogen-bound holo form of human hydroxymethylbilane synthase 0.9515 1 295
2ypn-assembly1.cif.gz_A hydroxymethylbilane synthase 0.9491 2 295
1pda-assembly1.cif.gz_A structure of porphobilinogen deaminase reveals a flexible multidomain polymerase with a single catalytic site 0.9465 2 296
7ccy-assembly2.cif.gz_C crystal structure of the 2-iodoporphobilinogen-bound holo form of human hydroxymethylbilane synthase 0.9452 1 295
ID Description Score Start End Superfamily
af_O94048_239_331_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9767 217 293 3.30.160.40
af_Q54P93_232_322_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9754 212 294 3.30.160.40
5h6oA03 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9708 212 291 3.30.160.40
1ah5A02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9691 94 190 3.40.190.10
af_O34090_221_303_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9659 214 293 3.30.160.40
ID Description Score Start End GO Terms
AF-A0A349NTM2-F1-model_v4 deleted 0.9861 2 97
AF-A0A1V5UNX7-F1-model_v4 Porphobilinogen deaminase (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) 0.9845 2 295 GO:0004418
GO:0005737
GO:0006782
AF-A0A2N2FCQ8-F1-model_v4 hydroxymethylbilane synthase (EC 2.5.1.61) 0.9826 160 296 GO:0004418
GO:0005737
GO:0006782
AF-A0A2V9CPE1-F1-model_v4 Porphobilinogen deaminase (PBG) (EC 2.5.1.61) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) 0.9823 2 236 GO:0004418
GO:0005737
GO:0006782
AF-A0A7U4FP57-F1-model_v4 deleted 0.9818 2 295

Map