F324662

General Info

Members Datasets Scaffolds Average Seq Length
213 158 204 286

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8006973647|8006977882
Length 342
Sequence DIASAVGQAGRLWENQTLNGKGGTPGLEPIPGADARMPSEFSPASFRSTAEGAARKAEAPGFRHIGVVGAGVIGSGVAQLFAQTGHDVVLIDIRPDQLDRARRDIARNLKLYNLLQPNRQQAADPLAHLRFSNTTTALAEMDFVIENITEDWELKRRVHLEIDDVVGASAPVAANTSAIPITRIAGVGRHPERVVGMHFMNPVPLMPMVEVIRGVHTSEHTISAAQSLLEQAGRQSILVNDSPGFVTNRVMMLMVNEAMFLVHEGVASAQDVDRLLKTCFGHKMGPLETADLIGLDTVLKSIEVILAETNDDKYRPCPLLKAKVYAGMYGRKSGEGFYKYDF

Samples

Sample ID Description Type Environment
1 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
2 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
3 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
4 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
5 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
6 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
7 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
8 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
9 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
10 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
19 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
22 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
23 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
24 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
25 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
28 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
46 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
47 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
51 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
54 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
55 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
56 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
57 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
58 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
59 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
60 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
61 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
64 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
65 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
67 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
91 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
92 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
96 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
97 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
98 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
99 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
100 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
101 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
102 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
103 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
104 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
105 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
106 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
107 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
108 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
109 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
110 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
111 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
112 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
113 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
114 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
115 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
116 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
117 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
118 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
119 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
120 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
121 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
122 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
123 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
124 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
125 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
126 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
127 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
128 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
129 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
130 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
131 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
132 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
133 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
134 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
135 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
136 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
137 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
138 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
139 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
140 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
141 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
144 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
145 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
146 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
147 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
148 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
149 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
150 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
151 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
152 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
153 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
154 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
155 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
156 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
157 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
158 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.77
Metatranscriptomes 0
Isolates 4.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.51
Nodule 1.41
Rhizoplane 3.29
Rhizosphere 79.81
Stem 0
Stem Tuber 0
Unclassified 7.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1003546 3300002737 Bacteria 4407
2 JGI25151J46595_10000453 3300003187 Bacteria 39682
3 JGI25151J46595_10004645 3300003187 Bacteria 7224
4 JGI25406J46586_10060294 3300003203 Bacteria 1228
5 rootL2_10091537 3300003322 Bacteria 7237
6 rootH1_10073580 3300003323 Bacteria 8685
7 Ga0055535_1002948 3300003761 Bacteria 5268
8 Ga0065714_10179878 3300005288 Bacteria 967
9 Ga0070658_10001279 3300005327 Bacteria 21489
10 Ga0070658_10030038 3300005327 Bacteria 4367
11 Ga0070683_100064292 3300005329 Bacteria 3415
12 Ga0070666_10014536 3300005335 Bacteria 5014
13 Ga0068868_100046740 3300005338 Bacteria 3388
14 Ga0070689_100001956 3300005340 Bacteria 13358
15 Ga0070689_100175226 3300005340 Bacteria 1739
16 Ga0070689_100190411 3300005340 Bacteria 1670
17 Ga0070668_100383192 3300005347 Bacteria 1197
18 Ga0070714_100019375 3300005435 Bacteria 5541
19 Ga0070713_100135527 3300005436 Unclassified 2175
20 Ga0070713_100168324 3300005436 Bacteria 1961
21 Ga0070711_100002912 3300005439 Bacteria 9864
22 Ga0070711_100436739 3300005439 Bacteria 1069
23 Ga0068867_100037353 3300005459 Bacteria 3530
24 Ga0070698_100170285 3300005471 Unclassified 2119
25 Ga0068853_100030257 3300005539 Bacteria 4572
26 Ga0068853_100031061 3300005539 Bacteria 4516
27 Ga0070695_100136171 3300005545 Bacteria 1698
28 Ga0070695_100158073 3300005545 Bacteria 1588
29 Ga0070693_100017738 3300005547 Bacteria 3707
30 Ga0070665_100000180 3300005548 Bacteria 112186
31 Ga0068855_100295827 3300005563 Bacteria 1794
32 Ga0068856_100010639 3300005614 Bacteria 8941
33 Ga0068856_100157293 3300005614 Unclassified 2283
34 Ga0068856_100275286 3300005614 Unclassified 1700
35 Ga0068859_100023388 3300005617 Bacteria 6202
36 Ga0068859_100158669 3300005617 Bacteria 2340
37 Ga0068859_100271035 3300005617 Bacteria 1790
38 Ga0068851_10013593 3300005834 Unclassified 3854
39 Ga0068863_100021679 3300005841 Bacteria 6128
40 Ga0068863_100106950 3300005841 Bacteria 2662
41 Ga0068860_100008122 3300005843 Bacteria 10453
42 Ga0068860_100089836 3300005843 Bacteria 2925
43 Ga0068862_100390795 3300005844 Bacteria 1299
44 Ga0081539_10020118 3300005985 Bacteria 4531
45 Ga0070712_100018763 3300006175 Bacteria 4498
46 Ga0075428_100080160 3300006844 Bacteria 3563
47 Ga0075428_100791760 3300006844 Bacteria 1008
48 Ga0075431_100003314 3300006847 Bacteria 15597
49 Ga0075431_100019169 3300006847 Bacteria 6972
50 Ga0075431_100038230 3300006847 Bacteria 4941
51 Ga0075433_10010631 3300006852 Bacteria 7400
52 Ga0075433_10091514 3300006852 Unclassified 2689
53 Ga0075434_100031824 3300006871 Bacteria 5202
54 Ga0075434_100101589 3300006871 Bacteria 2882
55 Ga0075434_100298369 3300006871 Bacteria 1632
56 Ga0075434_100301106 3300006871 Bacteria 1624
57 Ga0075434_100323175 3300006871 Bacteria 1563
58 Ga0075436_100002441 3300006914 Bacteria 12808
59 Ga0075436_100023123 3300006914 Bacteria 4269
60 Ga0097620_100023388 3300006931 Bacteria 6202
61 Ga0097620_100158674 3300006931 Bacteria 2340
62 Ga0097620_100271035 3300006931 Bacteria 1790
63 Ga0079104_1005223 3300006946 Bacteria 5248
64 Ga0075435_100041552 3300007076 Bacteria 3676
65 Ga0105244_10053048 3300009036 Bacteria 2062
66 Ga0105240_10049466 3300009093 Bacteria 5305
67 Ga0111539_10000997 3300009094 Bacteria 37088
68 Ga0111539_10176372 3300009094 Bacteria 2497
69 Ga0105245_10053232 3300009098 Bacteria 3632
70 Ga0105245_10403379 3300009098 Bacteria 1367
71 Ga0114129_10010363 3300009147 Bacteria 13293
72 Ga0114129_10032931 3300009147 Bacteria 7323
73 Ga0114129_10061839 3300009147 Bacteria 5233
74 Ga0114129_10258377 3300009147 Bacteria 2336
75 Ga0105243_10003608 3300009148 Bacteria 12463
76 Ga0105241_10001776 3300009174 Bacteria 16371
77 Ga0105241_10005844 3300009174 Bacteria 9083
78 Ga0105241_10199407 3300009174 Bacteria 1671
79 Ga0105242_10093522 3300009176 Bacteria 2534
80 Ga0105242_10153433 3300009176 Bacteria 2010
81 Ga0105248_10103956 3300009177 Bacteria 3202
82 Ga0105248_10486162 3300009177 Bacteria 1391
83 Ga0105238_10044548 3300009551 Bacteria 4485
84 Ga0105249_10124558 3300009553 Bacteria 2452
85 Ga0105239_10152398 3300010375 Unclassified 2580
86 Ga0105246_10000003 3300011119 Bacteria 96599
87 Ga0157373_10065879 3300013100 Bacteria 2563
88 Ga0157374_10000007 3300013296 Bacteria 595643
89 Ga0157374_10347280 3300013296 Unclassified 1474
90 Ga0163162_10002121 3300013306 Bacteria 18632
91 Ga0157380_10228738 3300014326 Bacteria 1669
92 Ga0213875_10007971 3300021388 Bacteria 5446
93 Ga0209566_100035 3300025225 Bacteria 314893
94 Ga0209437_100378 3300025233 Bacteria 45392
95 Ga0209258_104757 3300025242 Bacteria 2478
96 Ga0209676_1010247 3300025292 Bacteria 3935
97 Ga0209025_1000495 3300025294 Bacteria 75627
98 Ga0209025_1009110 3300025294 Bacteria 6990
99 Ga0207692_10065691 3300025898 Bacteria 1893
100 Ga0207654_10023948 3300025911 Bacteria 3277
101 Ga0207654_10134454 3300025911 Bacteria 1569
102 Ga0207707_10157241 3300025912 Bacteria 1988
103 Ga0207695_10021792 3300025913 Bacteria 7299
104 Ga0207693_10027491 3300025915 Bacteria 4497
105 Ga0207663_10004792 3300025916 Bacteria 6758
106 Ga0207687_10121548 3300025927 Bacteria 1954
107 Ga0207700_10427505 3300025928 Bacteria 1164
108 Ga0207686_10085535 3300025934 Bacteria 2069
109 Ga0207709_10063746 3300025935 Bacteria 2311
110 Ga0207670_10001123 3300025936 Bacteria 14083
111 Ga0207670_10148818 3300025936 Bacteria 1735
112 Ga0207665_10002987 3300025939 Bacteria 11348
113 Ga0207661_10022104 3300025944 Bacteria 4782
114 Ga0207712_10152444 3300025961 Bacteria 1787
115 Ga0207677_10176540 3300026023 Unclassified 1676
116 Ga0207703_10327396 3300026035 Bacteria 1404
117 Ga0207639_10000024 3300026041 Bacteria 213218
118 Ga0207641_10009504 3300026088 Bacteria 8016
119 Ga0207641_10038232 3300026088 Unclassified 4011
120 Ga0207648_10045271 3300026089 Bacteria 3859
121 Ga0207698_10213676 3300026142 Unclassified 1737
122 Ga0209281_1013493 3300027111 Bacteria 1762
123 Ga0207428_10001629 3300027907 Bacteria 23316
124 Ga0268266_10000272 3300028379 Bacteria 85423
125 Ga0268265_10232308 3300028380 Bacteria 1622
126 Ga0268264_10000495 3300028381 Bacteria 51543
127 Ga0268264_10053256 3300028381 Bacteria 3376
128 Ga0314311_1173584 3300030733 Bacteria 1641
129 Ga0265316_10000441 3300031344 Bacteria 47158
130 Ga0307516_10047876 3300031730 Bacteria 4209
131 Ga0307412_10024157 3300031911 Bacteria 3749
132 Ga0373926_0034387 3300035083 Bacteria 1793
133 Ga0373929_0000010 3300035085 Bacteria 192939
134 Ga0373944_0013847 3300035089 Bacteria 2244
135 Ga0373932_0000299 3300035112 Bacteria 14959
136 Ga0373936_0035667 3300035113 Bacteria 1981
137 Ga0373954_0012975 3300035118 Bacteria 3710
138 Ga0373956_0000311 3300035119 Bacteria 19669
139 Ga0373957_0003953 3300035120 Bacteria 4453
140 Ga0373943_0001336 3300035170 Bacteria 11108
141 Ga0373924_0000269 3300035410 Bacteria 15922
142 Ga0373935_0153473 3300035692 Bacteria 1564
143 Ga0373927_0013096 3300035695 Bacteria 5516
144 Ga0373933_0441811 3300035724 Bacteria 850
145 Ga0373947_0058567 3300035725 Bacteria 2334
146 Ga0436364_1096442 3300037853 Bacteria 22208
147 Ga0400490_35262 3300038726 Bacteria 11246
148 Ga0466961_0011387 3300044693 Bacteria 5689
149 Ga0466961_0089799 3300044693 Bacteria 1940
150 Ga0466963_0177815 3300044694 Bacteria 1485
151 Ga0466959_0026172 3300045049 Bacteria 4325
152 Ga0466959_0048950 3300045049 Bacteria 3105
153 Ga0495603_0346878 3300046455 Bacteria 852
154 Ga0495651_0246410 3300046462 Bacteria 1223
155 Ga0495582_0053308 3300046473 Bacteria 2230
156 Ga0495639_0045049 3300046475 Bacteria 1995
157 Ga0495606_0006201 3300046507 Bacteria 11123
158 Ga0495666_0017684 3300046526 Bacteria 3550
159 Ga0495665_0051853 3300046531 Bacteria 2172
160 Ga0495667_0041087 3300046559 Bacteria 3068
161 Ga0495647_0064342 3300046681 Bacteria 1454
162 Ga0495658_0072604 3300046683 Bacteria 2002
163 Ga0495624_0264418 3300046690 Bacteria 1039
164 Ga0496100_0122511 3300048903 Bacteria 1821
165 Ga0496102_0007335 3300048905 Bacteria 9416
166 Ga0496104_0188151 3300048907 Bacteria 1975
167 Ga0496105_0203114 3300048908 Bacteria 1617
168 Ga0496112_0007717 3300048915 Bacteria 9571
169 Ga0496112_0231051 3300048915 Bacteria 1804
170 Ga0496113_0001461 3300048916 Bacteria 13165
171 Ga0496116_0000274 3300048919 Bacteria 89810
172 Ga0496116_0001723 3300048919 Bacteria 23884
173 Ga0496122_0000148 3300048925 Bacteria 164858
174 Ga0496122_0040398 3300048925 Unclassified 3708
175 Ga0496123_0003805 3300048926 Bacteria 16494
176 Ga0496124_0253635 3300048927 Unclassified 1299
177 Ga0496125_0115599 3300048928 Bacteria 1929
178 Ga0496126_0000121 3300048929 Bacteria 183205
179 Ga0496126_0006368 3300048929 Bacteria 13164
180 Ga0501041_0011747 3300049577 Bacteria 5184
181 Ga0501042_0007722 3300049578 Bacteria 7065
182 Ga0501072_0058834 3300049588 Bacteria 3029
183 Ga0501073_0002481 3300049589 Bacteria 13771
184 Ga0501257_008417 3300049686 Bacteria 2317
185 Ga0501080_0029674 3300049742 Bacteria 5090
186 Ga0501083_0000992 3300049744 Bacteria 18864
187 nmdc:mga05p37_25472_c1 3300050507 Bacteria 7195
188 nmdc:mga05p37_50226_c1 3300050507 Bacteria 5129
189 nmdc:mga06r32_117797_c1 3300050510 Bacteria 2618
190 nmdc:mga06r32_12624_c1 3300050510 Bacteria 7631
191 nmdc:mga06r32_152106_c1 3300050510 Bacteria 2293
192 nmdc:mga0n895_11088_c1 3300050512 Bacteria 8019
193 nmdc:mga0n895_122235_c1 3300050512 Bacteria 2625
194 nmdc:mga0n895_438696_c1 3300050512 Unclassified 1319
195 nmdc:mga08x19_21637_c1 3300050514 Bacteria 3973
196 nmdc:mga08x19_5144_c1 3300050514 Bacteria 7733
197 Ga0500583_0011996 3300053092 Bacteria 3290
198 Ga0500583_0072361 3300053092 Bacteria 1651
199 Ga0500651_0263224 3300053093 Bacteria 999
200 Ga0500588_0000127 3300053146 Bacteria 10141
201 Ga0500588_0000260 3300053146 Bacteria 7666
202 Ga0500622_0000005 3300053156 Bacteria 502443
203 Ga0466962_0076473 3300061719 Archaea 1600
204 Ga0466962_0125154 3300061719 Bacteria 1241

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048928 Ga0496125_0115599 Ga0496125_0115599_1149_1856 235
2 3300048927 Ga0496124_0253635 Ga0496124_0253635_50_781 241
3 3300003323 rootH1_10073580 rootH1_100735808 244
4 3300035724 Ga0373933_0441811 Ga0373933_0441811_103_837 244
5 3300053093 Ga0500651_0263224 Ga0500651_0263224_209_973 254
6 3300035725 Ga0373947_0058567 Ga0373947_0058567_1544_2320 258
7 3300009094 Ga0111539_10176372 Ga0111539_101763722 270
8 3300005340 Ga0070689_100190411 Ga0070689_1001904111 271
9 3300009148 Ga0105243_10003608 Ga0105243_100036087 271
10 3300009174 Ga0105241_10001776 Ga0105241_100017762 271
11 3300009176 Ga0105242_10153433 Ga0105242_101534333 271
12 3300009177 Ga0105248_10486162 Ga0105248_104861623 271
13 3300009553 Ga0105249_10124558 Ga0105249_101245582 271
14 3300013100 Ga0157373_10065879 Ga0157373_100658792 271
15 3300025927 Ga0207687_10121548 Ga0207687_101215481 271
16 3300035113 Ga0373936_0035667 Ga0373936_0035667_215_1030 271
17 3300035120 Ga0373957_0003953 Ga0373957_0003953_1476_2291 271
18 3300035692 Ga0373935_0153473 Ga0373935_0153473_335_1150 271
19 3300046455 Ga0495603_0346878 Ga0495603_0346878_15_830 271
20 3300046473 Ga0495582_0053308 Ga0495582_0053308_813_1628 271
21 3300046475 Ga0495639_0045049 Ga0495639_0045049_225_1040 271
22 3300046559 Ga0495667_0041087 Ga0495667_0041087_11_826 271
23 3300046681 Ga0495647_0064342 Ga0495647_0064342_44_859 271
24 3300046683 Ga0495658_0072604 Ga0495658_0072604_21_836 271
25 3300048903 Ga0496100_0122511 Ga0496100_0122511_957_1772 271
26 3300048907 Ga0496104_0188151 Ga0496104_0188151_1141_1956 271
27 3300005617 Ga0068859_100158669 Ga0068859_1001586693 273
28 3300006931 Ga0097620_100158674 Ga0097620_1001586743 273
29 3300005459 Ga0068867_100037353 Ga0068867_1000373532 274
30 3300005539 Ga0068853_100031061 Ga0068853_1000310613 274
31 3300005545 Ga0070695_100136171 Ga0070695_1001361712 274
32 3300005617 Ga0068859_100023388 Ga0068859_1000233886 274
33 3300005843 Ga0068860_100089836 Ga0068860_1000898362 274
34 3300005844 Ga0068862_100390795 Ga0068862_1003907952 274
35 3300006931 Ga0097620_100023388 Ga0097620_1000233882 274
36 3300009093 Ga0105240_10049466 Ga0105240_100494665 274
37 3300013306 Ga0163162_10002121 Ga0163162_100021217 274
38 3300025911 Ga0207654_10023948 Ga0207654_100239482 274
39 3300025913 Ga0207695_10021792 Ga0207695_100217923 274
40 3300025935 Ga0207709_10063746 Ga0207709_100637462 274
41 3300025961 Ga0207712_10152444 Ga0207712_101524442 274
42 3300026035 Ga0207703_10327396 Ga0207703_103273962 274
43 3300026041 Ga0207639_10000024 Ga0207639_10000024124 274
44 3300026089 Ga0207648_10045271 Ga0207648_100452712 274
45 3300028380 Ga0268265_10232308 Ga0268265_102323083 274
46 3300028381 Ga0268264_10053256 Ga0268264_100532562 274
47 3300049589 Ga0501073_0002481 Ga0501073_0002481_11335_12222 274
48 3300049742 Ga0501080_0029674 Ga0501080_0029674_608_1495 274
49 3300003322 rootL2_10091537 rootL2_100915378 275
50 3300007076 Ga0075435_100041552 Ga0075435_1000415524 275
51 3300009094 Ga0111539_10000997 Ga0111539_1000099734 275
52 3300009147 Ga0114129_10010363 Ga0114129_100103632 275
53 3300014326 Ga0157380_10228738 Ga0157380_102287382 275
54 3300030733 Ga0314311_1173584 Ga0314311_11735842 275
55 3300046526 Ga0495666_0017684 Ga0495666_0017684_985_1848 275
56 3300050507 nmdc:mga05p37_50226_c1 nmdc:mga05p37_50226_c1_2818_3645 275
57 3300050510 nmdc:mga06r32_152106_c1 nmdc:mga06r32_152106_c1_60_887 275
58 3300005327 Ga0070658_10030038 Ga0070658_100300383 276
59 3300005340 Ga0070689_100001956 Ga0070689_1000019563 276
60 3300005545 Ga0070695_100158073 Ga0070695_1001580732 276
61 3300005841 Ga0068863_100021679 Ga0068863_1000216794 276
62 3300009177 Ga0105248_10103956 Ga0105248_101039561 276
63 3300011119 Ga0105246_10000003 Ga0105246_1000000315 276
64 3300025936 Ga0207670_10001123 Ga0207670_100011234 276
65 3300026088 Ga0207641_10009504 Ga0207641_100095046 276
66 3300035118 Ga0373954_0012975 Ga0373954_0012975_1212_2081 276
67 3300035119 Ga0373956_0000311 Ga0373956_0000311_7702_8571 276
68 3300048919 Ga0496116_0000274 Ga0496116_0000274_84825_85667 276
69 iso_pu_bacteria 2551306166 2552113521 276
70 3300005335 Ga0070666_10014536 Ga0070666_100145363 277
71 3300049744 Ga0501083_0000992 Ga0501083_0000992_8615_9475 277
72 3300006847 Ga0075431_100003314 Ga0075431_1000033147 278
73 3300026088 Ga0207641_10038232 Ga0207641_100382325 278
74 3300050510 nmdc:mga06r32_12624_c1 nmdc:mga06r32_12624_c1_2383_3243 278
75 3300050512 nmdc:mga0n895_438696_c1 nmdc:mga0n895_438696_c1_436_1272 278
76 3300005841 Ga0068863_100106950 Ga0068863_1001069503 279
77 3300006847 Ga0075431_100019169 Ga0075431_1000191695 279
78 3300006871 Ga0075434_100298369 Ga0075434_1002983693 279
79 3300006914 Ga0075436_100002441 Ga0075436_1000024413 279
80 3300050514 nmdc:mga08x19_5144_c1 nmdc:mga08x19_5144_c1_149_1015 279
81 iso_pu_bacteria 2524023129 2524191503 279
82 iso_pu_bacteria 2889042446 2889047224 279
83 iso_pu_bacteria 2904490793 2904494126 279
84 iso_pu_bacteria 2919160200 2919163199 279
85 iso_pu_bacteria 2931384279 2931390746 279
86 3300009098 Ga0105245_10403379 Ga0105245_104033792 280
87 3300009147 Ga0114129_10032931 Ga0114129_100329313 280
88 3300009147 Ga0114129_10061839 Ga0114129_100618395 280
89 3300050507 nmdc:mga05p37_25472_c1 nmdc:mga05p37_25472_c1_5822_6688 280
90 3300050510 nmdc:mga06r32_117797_c1 nmdc:mga06r32_117797_c1_1222_2106 280
91 3300050512 nmdc:mga0n895_122235_c1 nmdc:mga0n895_122235_c1_1577_2461 280
92 iso_pu_bacteria 8057733483 8057737766 280
93 3300006946 Ga0079104_1005223 Ga0079104_10052235 281
94 3300009036 Ga0105244_10053048 Ga0105244_100530483 281
95 3300013296 Ga0157374_10000007 Ga0157374_10000007508 281
96 3300027111 Ga0209281_1013493 Ga0209281_10134932 281
97 3300031911 Ga0307412_10024157 Ga0307412_100241574 281
98 3300035112 Ga0373932_0000299 Ga0373932_0000299_3395_4246 281
99 3300038726 Ga0400490_35262 Ga0400490_35262_9004_9855 281
100 3300044693 Ga0466961_0011387 Ga0466961_0011387_2279_3124 281
101 3300045049 Ga0466959_0026172 Ga0466959_0026172_378_1223 281
102 3300046507 Ga0495606_0006201 Ga0495606_0006201_7219_8064 281
103 3300048919 Ga0496116_0001723 Ga0496116_0001723_22744_23589 281
104 3300048925 Ga0496122_0040398 Ga0496122_0040398_393_1238 281
105 3300048929 Ga0496126_0006368 Ga0496126_0006368_4839_5684 281
106 3300049577 Ga0501041_0011747 Ga0501041_0011747_988_1902 281
107 3300049578 Ga0501042_0007722 Ga0501042_0007722_5464_6378 281
108 3300049588 Ga0501072_0058834 Ga0501072_0058834_236_1150 281
109 3300053156 Ga0500622_0000005 Ga0500622_0000005_32330_33175 281
110 3300061719 Ga0466962_0076473 Ga0466962_0076473_86_931 281
111 iso_pu_bacteria 8006973647 8006977882 281
112 3300005329 Ga0070683_100064292 Ga0070683_1000642922 282
113 3300005338 Ga0068868_100046740 Ga0068868_1000467404 282
114 3300005435 Ga0070714_100019375 Ga0070714_1000193753 282
115 3300005436 Ga0070713_100168324 Ga0070713_1001683242 282
116 3300005439 Ga0070711_100002912 Ga0070711_1000029124 282
117 3300005439 Ga0070711_100436739 Ga0070711_1004367391 282
118 3300005539 Ga0068853_100030257 Ga0068853_1000302573 282
119 3300005547 Ga0070693_100017738 Ga0070693_1000177383 282
120 3300005614 Ga0068856_100010639 Ga0068856_1000106395 282
121 3300005834 Ga0068851_10013593 Ga0068851_100135933 282
122 3300006175 Ga0070712_100018763 Ga0070712_1000187633 282
123 3300009098 Ga0105245_10053232 Ga0105245_100532324 282
124 3300009174 Ga0105241_10199407 Ga0105241_101994071 282
125 3300009176 Ga0105242_10093522 Ga0105242_100935223 282
126 3300009551 Ga0105238_10044548 Ga0105238_100445481 282
127 3300013296 Ga0157374_10347280 Ga0157374_103472802 282
128 3300025898 Ga0207692_10065691 Ga0207692_100656912 282
129 3300025911 Ga0207654_10134454 Ga0207654_101344542 282
130 3300025912 Ga0207707_10157241 Ga0207707_101572412 282
131 3300025915 Ga0207693_10027491 Ga0207693_100274913 282
132 3300025916 Ga0207663_10004792 Ga0207663_100047922 282
133 3300025928 Ga0207700_10427505 Ga0207700_104275051 282
134 3300025934 Ga0207686_10085535 Ga0207686_100855353 282
135 3300025939 Ga0207665_10002987 Ga0207665_100029873 282
136 3300025944 Ga0207661_10022104 Ga0207661_100221042 282
137 3300026023 Ga0207677_10176540 Ga0207677_101765402 282
138 3300026142 Ga0207698_10213676 Ga0207698_102136763 282
139 3300035083 Ga0373926_0034387 Ga0373926_0034387_470_1384 282
140 3300035089 Ga0373944_0013847 Ga0373944_0013847_1278_2189 282
141 3300035170 Ga0373943_0001336 Ga0373943_0001336_4972_5883 282
142 3300035410 Ga0373924_0000269 Ga0373924_0000269_11165_12076 282
143 3300035695 Ga0373927_0013096 Ga0373927_0013096_1948_2859 282
144 3300044693 Ga0466961_0089799 Ga0466961_0089799_1020_1883 282
145 3300046462 Ga0495651_0246410 Ga0495651_0246410_209_1120 282
146 3300046531 Ga0495665_0051853 Ga0495665_0051853_323_1234 282
147 3300046690 Ga0495624_0264418 Ga0495624_0264418_52_966 282
148 3300048905 Ga0496102_0007335 Ga0496102_0007335_1224_2135 282
149 3300048908 Ga0496105_0203114 Ga0496105_0203114_207_1121 282
150 3300048915 Ga0496112_0007717 Ga0496112_0007717_6542_7456 282
151 3300048915 Ga0496112_0231051 Ga0496112_0231051_312_1223 282
152 3300048916 Ga0496113_0001461 Ga0496113_0001461_10428_11342 282
153 3300049686 Ga0501257_008417 Ga0501257_008417_624_1478 282
154 3300053092 Ga0500583_0072361 Ga0500583_0072361_374_1228 282
155 3300053146 Ga0500588_0000260 Ga0500588_0000260_3511_4365 282
156 3300021388 Ga0213875_10007971 Ga0213875_100079712 283
157 3300037853 Ga0436364_1096442 Ga0436364_1096442_18953_19810 283
158 3300048925 Ga0496122_0000148 Ga0496122_0000148_45029_45880 283
159 3300048926 Ga0496123_0003805 Ga0496123_0003805_3997_4848 283
160 3300048929 Ga0496126_0000121 Ga0496126_0000121_133379_134230 283
161 3300053092 Ga0500583_0011996 Ga0500583_0011996_2408_3259 283
162 3300053146 Ga0500588_0000127 Ga0500588_0000127_669_1520 283
163 3300005327 Ga0070658_10001279 Ga0070658_100012796 284
164 3300005340 Ga0070689_100175226 Ga0070689_1001752263 284
165 3300005347 Ga0070668_100383192 Ga0070668_1003831921 284
166 3300005471 Ga0070698_100170285 Ga0070698_1001702852 284
167 3300025936 Ga0207670_10148818 Ga0207670_101488183 284
168 3300031730 Ga0307516_10047876 Ga0307516_100478762 284
169 3300003203 JGI25406J46586_10060294 JGI25406J46586_100602942 285
170 3300005288 Ga0065714_10179878 Ga0065714_101798781 285
171 3300005548 Ga0070665_100000180 Ga0070665_10000018059 285
172 3300005843 Ga0068860_100008122 Ga0068860_10000812210 285
173 3300005985 Ga0081539_10020118 Ga0081539_100201183 285
174 3300006852 Ga0075433_10010631 Ga0075433_100106317 285
175 3300006871 Ga0075434_100031824 Ga0075434_1000318244 285
176 3300006871 Ga0075434_100101589 Ga0075434_1001015893 285
177 3300006871 Ga0075434_100323175 Ga0075434_1003231753 285
178 3300006914 Ga0075436_100023123 Ga0075436_1000231232 285
179 3300025292 Ga0209676_1010247 Ga0209676_10102474 285
180 3300028379 Ga0268266_10000272 Ga0268266_1000027215 285
181 3300028381 Ga0268264_10000495 Ga0268264_1000049518 285
182 3300035085 Ga0373929_0000010 Ga0373929_0000010_123333_124244 285
183 3300044694 Ga0466963_0177815 Ga0466963_0177815_229_1092 285
184 3300045049 Ga0466959_0048950 Ga0466959_0048950_1162_2025 285
185 3300050512 nmdc:mga0n895_11088_c1 nmdc:mga0n895_11088_c1_5186_6049 285
186 3300050514 nmdc:mga08x19_21637_c1 nmdc:mga08x19_21637_c1_1339_2208 285
187 3300061719 Ga0466962_0125154 Ga0466962_0125154_279_1142 285
188 iso_pu_bacteria 2891326441 2891326603 285
189 3300006844 Ga0075428_100080160 Ga0075428_1000801603 286
190 3300006844 Ga0075428_100791760 Ga0075428_1007917601 286
191 3300006847 Ga0075431_100038230 Ga0075431_1000382302 286
192 3300006852 Ga0075433_10091514 Ga0075433_100915142 286
193 3300009147 Ga0114129_10258377 Ga0114129_102583772 286
194 3300027907 Ga0207428_10001629 Ga0207428_100016294 286
195 3300005614 Ga0068856_100275286 Ga0068856_1002752862 287
196 3300005617 Ga0068859_100271035 Ga0068859_1002710352 287
197 3300006931 Ga0097620_100271035 Ga0097620_1002710352 287
198 3300009174 Ga0105241_10005844 Ga0105241_100058445 287
199 3300010375 Ga0105239_10152398 Ga0105239_101523983 287
200 3300031344 Ga0265316_10000441 Ga0265316_1000044119 287
201 3300005436 Ga0070713_100135527 Ga0070713_1001355272 288
202 3300005563 Ga0068855_100295827 Ga0068855_1002958272 288
203 3300005614 Ga0068856_100157293 Ga0068856_1001572933 288
204 3300002737 JGI25162J39368_1003546 JGI25162J39368_10035462 289
205 3300003187 JGI25151J46595_10000453 JGI25151J46595_1000045316 289
206 3300003187 JGI25151J46595_10004645 JGI25151J46595_100046452 289
207 3300003761 Ga0055535_1002948 Ga0055535_10029481 289
208 3300006871 Ga0075434_100301106 Ga0075434_1003011063 289
209 3300025225 Ga0209566_100035 Ga0209566_100035196 289
210 3300025233 Ga0209437_100378 Ga0209437_10037815 289
211 3300025242 Ga0209258_104757 Ga0209258_1047572 289
212 3300025294 Ga0209025_1000495 Ga0209025_10004959 289
213 3300025294 Ga0209025_1009110 Ga0209025_10091102 289

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00725

3HCDH

3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

244

340

1

PF02737

3HCDH_N

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

64

242

0.96

PF02254

TrkA_N

TrkA-N domain

65

112

0.9

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

64

112

0.87

PF02558

ApbA

Ketopantoate reductase PanE/ApbA

65

145

0.84

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

19

112

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
4x4j-assembly1.cif.gz_B-2 structural and functional studies of bexe: insights into oxidation during be-7585a biosynthesis 0.9744 4 32
4j36-assembly2.cif.gz_B cocrystal structure of kynurenine 3-monooxygenase in complex with upf 648 inhibitor(kmo-394upf) 0.9689 2 34
7vwp-assembly1.cif.gz_D-2 structure of the flavin-dependent monooxygenase flso1 from the biosynthesis of fluostatinsin 0.9688 4 31
8hdd-assembly1.cif.gz_A complex structure of catalytic, small, and a partial electron transfer subunits from burkholderia cepacia fad glucose dehydrogenase 0.9679 4 33
4j36-assembly1.cif.gz_A cocrystal structure of kynurenine 3-monooxygenase in complex with upf 648 inhibitor(kmo-394upf) 0.9664 2 34
ID Description Score Start End Superfamily
af_P9WNY9_4_366_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9988 4 33 3.50.50.60
6acqA02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9852 193 277 1.10.1040.10
4kueA02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9841 193 277 1.10.1040.10
4kueB02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9838 193 277 1.10.1040.10
4pzeC02 Mainly Alpha;Orthogonal Bundle;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2;N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.9829 193 277 1.10.1040.10
ID Description Score Start End GO Terms
AF-A0A4U3BML9-F1-model_v4 deleted 0.9963 139 264
AF-A0A4U3BML9-F1-model_v4 deleted 0.9885 139 264
AF-A0A3B9B4L3-F1-model_v4 deleted 0.9873 189 281
AF-A0A0C9T8E5-F1-model_v4 3-hydroxyacyl-CoA dehydrogenase C-terminal domain-containing protein 0.9858 194 281 GO:0006631
GO:0016616
AF-A0A645GXP1-F1-model_v4 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.35) 0.9851 175 282 GO:0003857
GO:0006635
GO:0008691

Feature Viewer

pLDDT pTM Quality
92.81 0.88 High
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Predicted Structure (AlphaFold2)

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