F323169

General Info

Members Datasets Scaffolds Average Seq Length
212 148 424 369

Family's Representative Sequence

Representative Sequence 3300044694|Ga0466963_0088840|Ga0466963_0088840_52_1275
Length 402
Sequence MTHAAGIAVVPGRNPRQGTSVHRNRTTTPTVRNARSXXXXLVLAGCERGSSSGPAHSTSGPSGCPTVQARAQAAVSRAERTDIPWDGPTRGPTAVAGKSIVYVAQTMTNPGVAGAADGVRKAARVIGWDVRVIDGGGTPAGIQAAMSEAVDVRPSGIVIGGFDPGSTSQQVARANAAGIPLVGWHAVASPGPSRRPRLFTNVTTKVEDVARASGQWVISSSHGTAGAVVFTDASIPFAKYKSDLIRKELATCAGVRLLAYENIPLPDATSRTPREISSLLSRFQGRWTHSVAINDLYFADAAPAFRAAGRNGAGPPFNIGAGDGDPSAFERINSGQYQAATVPEPLSLQGWQIVDEFNRAFSGRPASGYVAPVHISTADNSRGATSWDPVGYREAYRKIWGR

Samples

Sample ID Description Type Environment
1 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
4 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
5 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
8 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
9 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
10 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
11 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
12 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
13 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
14 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
15 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
16 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
22 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
23 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
25 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
26 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
27 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
28 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
29 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
30 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
31 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
32 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
33 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
34 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
35 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
36 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
37 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
38 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
39 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
40 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
41 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
42 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
43 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
44 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
45 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
46 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
47 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
48 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
49 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
50 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
51 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
52 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
53 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
54 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
55 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
58 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
59 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
60 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
61 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
62 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
63 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
64 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
65 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
66 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
67 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
68 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
69 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
70 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
71 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
72 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
73 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
74 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
75 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
76 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
77 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
78 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
79 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
80 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
81 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
82 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
83 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
84 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
85 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
86 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
87 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
88 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
89 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
90 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
91 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
92 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
93 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
94 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
95 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
96 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
97 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
98 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
99 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
100 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
101 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
102 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
103 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
104 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
105 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
106 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
107 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
108 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
113 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
114 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
115 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
116 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
117 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
118 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
119 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
120 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
121 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
122 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
123 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
124 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
125 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
126 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
127 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
128 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
129 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
130 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
131 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
132 2867475112 Streptomyces sp. TM32 Isolate Unclassified
133 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
134 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
135 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
136 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
137 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
138 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
139 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
140 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
141 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
142 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
143 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
144 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
145 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
146 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
147 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
148 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.08
Metatranscriptomes 0.47
Isolates 17.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.08
Nodule 0.94
Rhizoplane 1.42
Rhizosphere 76.42
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466963_0088840 3300044694 Bacteria 2102
2 Ga0006562J51391_1085217 3300003578 Bacteria 1650
3 Ga0068853_100115469 3300005539 Bacteria 2389
4 Ga0070665_100156552 3300005548 Bacteria 2280
5 Ga0068855_100017065 3300005563 Bacteria 8732
6 Ga0068856_100019747 3300005614 Bacteria 6539
7 Ga0068856_100072444 3300005614 Bacteria 3411
8 Ga0075365_10193269 3300006038 Bacteria 1425
9 Ga0075364_10001956 3300006051 Bacteria 11480
10 Ga0075367_10126063 3300006178 Bacteria 1580
11 Ga0105237_10031134 3300009545 Bacteria 5411
12 Ga0105237_10098786 3300009545 Bacteria 2910
13 Ga0105239_10074370 3300010375 Bacteria 3736
14 Ga0182008_10001096 3300014497 Bacteria 18678
15 Ga0182005_1019540 3300015265 Bacteria 1867
16 Ga0207426_1000338 3300025302 Bacteria 88019
17 Ga0207426_1001838 3300025302 Bacteria 15637
18 Ga0207426_1034257 3300025302 Bacteria 1630
19 Ga0207647_10016029 3300025904 Bacteria 5123
20 Ga0207647_10130347 3300025904 Bacteria 1478
21 Ga0207695_10001504 3300025913 Bacteria 38742
22 Ga0207671_10033300 3300025914 Bacteria 3833
23 Ga0207679_10042175 3300025945 Bacteria 3278
24 Ga0207639_10091209 3300026041 Bacteria 2439
25 Ga0207702_10345838 3300026078 Bacteria 1421
26 Ga0209371_1025372 3300027312 Bacteria 1363
27 Ga0209813_10029843 3300027866 Bacteria 1599
28 Ga0268264_10000246 3300028381 Bacteria 102361
29 Ga0268256_1027716 3300030500 Bacteria 1408
30 Ga0307512_10001288 3300030522 Bacteria 35992
31 Ga0307508_10006081 3300031616 Bacteria 11386
32 Ga0307508_10008662 3300031616 Bacteria 9391
33 Ga0307508_10106069 3300031616 Bacteria 2408
34 Ga0307516_10041176 3300031730 Bacteria 4594
35 Ga0307516_10112080 3300031730 Bacteria 2529
36 Ga0307518_10004194 3300031838 Bacteria 10339
37 Ga0307510_10080243 3300033180 Bacteria 3174
38 Ga0395898_0007959 3300037466 Bacteria 11240
39 Ga0439439_0003728 3300041406 Bacteria 3383
40 Ga0451791_0088398 3300041451 Bacteria 1595
41 Ga0451833_0320918 3300041491 Bacteria 1805
42 Ga0451853_0576477 3300041512 Bacteria 3821
43 Ga0451853_1552484 3300041512 Bacteria 5861
44 Ga0451853_2391168 3300041512 Bacteria 1524
45 Ga0451853_3620091 3300041512 Bacteria 2850
46 Ga0439433_0000450 3300041999 Bacteria 7562
47 Ga0439442_019149 3300042002 Bacteria 1416
48 Ga0439449_0000399 3300042007 Bacteria 16088
49 Ga0439449_0002468 3300042007 Bacteria 7228
50 Ga0439457_000127 3300042014 Bacteria 18915
51 Ga0439457_000350 3300042014 Bacteria 12846
52 Ga0439457_003601 3300042014 Bacteria 4198
53 Ga0439457_011793 3300042014 Bacteria 1978
54 Ga0439462_0019536 3300042015 Bacteria 1764
55 Ga0450894_002013 3300042131 Bacteria 2801
56 Ga0450896_004326 3300042133 Bacteria 1925
57 Ga0450899_000086 3300042135 Bacteria 7927
58 Ga0450906_008749 3300042145 Bacteria 1947
59 Ga0450908_005824 3300042184 Bacteria 2355
60 Ga0466969_0009270 3300044656 Bacteria 5218
61 Ga0466969_0016743 3300044656 Bacteria 3834
62 Ga0466972_0016056 3300044658 Bacteria 3743
63 Ga0466965_0016415 3300044683 Bacteria 3524
64 Ga0466965_0037466 3300044683 Bacteria 2381
65 Ga0466966_0002379 3300044684 Bacteria 12283
66 Ga0466966_0008084 3300044684 Bacteria 6972
67 Ga0466966_0008497 3300044684 Bacteria 6799
68 Ga0466961_0000861 3300044693 Bacteria 18937
69 Ga0466961_0007099 3300044693 Bacteria 7124
70 Ga0466961_0022353 3300044693 Bacteria 4068
71 Ga0466963_0022370 3300044694 Bacteria 4003
72 Ga0466964_0009271 3300044706 Bacteria 3703
73 Ga0466964_0028953 3300044706 Bacteria 2185
74 Ga0466970_0000152 3300044765 Bacteria 32457
75 Ga0466957_0001037 3300044842 Bacteria 14339
76 Ga0466960_0028269 3300044901 Bacteria 2565
77 Ga0466959_0004274 3300045049 Bacteria 9524
78 Ga0466958_0047256 3300045836 Bacteria 2598
79 Ga0466967_0000293 3300045976 Bacteria 22336
80 Ga0495627_064287 3300046453 Bacteria 1080
81 Ga0495629_0004910 3300046459 Bacteria 10038
82 Ga0495629_0052940 3300046459 Bacteria 2840
83 Ga0495651_0012776 3300046462 Bacteria 6483
84 Ga0495605_0002987 3300046474 Bacteria 10223
85 Ga0495605_0004323 3300046474 Bacteria 8360
86 Ga0495662_0015011 3300046476 Bacteria 3763
87 Ga0495585_0068500 3300046492 Bacteria 1938
88 Ga0495594_0007019 3300046499 Bacteria 5790
89 Ga0495607_0052099 3300046501 Bacteria 2372
90 Ga0495583_0012003 3300046506 Bacteria 4935
91 Ga0495583_0026611 3300046506 Bacteria 2863
92 Ga0495606_0022070 3300046507 Bacteria 4649
93 Ga0495610_0074618 3300046512 Bacteria 1573
94 Ga0495616_0003107 3300046513 Bacteria 10748
95 Ga0495620_0001911 3300046515 Bacteria 12200
96 Ga0495620_0005483 3300046515 Bacteria 7071
97 Ga0495628_0012738 3300046516 Bacteria 7084
98 Ga0495628_0061994 3300046516 Bacteria 2932
99 Ga0495631_0002496 3300046518 Bacteria 10352
100 Ga0495632_0090204 3300046519 Bacteria 1454
101 Ga0495648_0122280 3300046524 Bacteria 1397
102 Ga0495666_0005079 3300046526 Bacteria 6658
103 Ga0495666_0015824 3300046526 Bacteria 3758
104 Ga0495652_0069825 3300046529 Bacteria 2939
105 Ga0495652_0114224 3300046529 Bacteria 2166
106 Ga0495640_0024815 3300046533 Bacteria 4356
107 Ga0495609_0019716 3300046538 Bacteria 3118
108 Ga0495609_0092631 3300046538 Bacteria 1313
109 Ga0495597_0005837 3300046542 Bacteria 6439
110 Ga0495597_0011685 3300046542 Bacteria 4252
111 Ga0495645_0060796 3300046543 Bacteria 2738
112 Ga0495622_0003139 3300046557 Bacteria 7824
113 Ga0495633_0021186 3300046558 Bacteria 3254
114 Ga0495668_0013167 3300046616 Bacteria 4891
115 Ga0495634_0055363 3300046642 Bacteria 2652
116 Ga0495634_0091985 3300046642 Bacteria 1968
117 Ga0495634_0097942 3300046642 Bacteria 1898
118 Ga0495611_0051449 3300046648 Bacteria 1856
119 Ga0495625_0033367 3300046660 Bacteria 3807
120 Ga0495625_0046935 3300046660 Bacteria 3115
121 Ga0495625_0116775 3300046660 Bacteria 1820
122 Ga0495635_0011600 3300046663 Bacteria 6176
123 Ga0495635_0021333 3300046663 Bacteria 4514
124 Ga0495657_0013592 3300046675 Bacteria 6002
125 Ga0495657_0014165 3300046675 Bacteria 5859
126 Ga0495623_0049367 3300046679 Bacteria 2667
127 Ga0495646_0015180 3300046680 Bacteria 4892
128 Ga0495613_0009342 3300046689 Bacteria 7273
129 Ga0495613_0009987 3300046689 Bacteria 7052
130 Ga0495624_0052874 3300046690 Bacteria 2565
131 Ga0495624_0071822 3300046690 Bacteria 2153
132 Ga0495624_0250020 3300046690 Bacteria 1072
133 Ga0495649_0007380 3300046694 Bacteria 6715
134 Ga0495589_0003483 3300046794 Bacteria 8514
135 Ga0495589_0045517 3300046794 Bacteria 2179
136 Ga0495600_0061900 3300046809 Bacteria 2445
137 Ga0495660_0037766 3300046810 Bacteria 2689
138 Ga0495660_0075069 3300046810 Bacteria 1784
139 Ga0495581_0098292 3300047315 Bacteria 1700
140 Ga0495604_0101425 3300047317 Bacteria 2114
141 Ga0495636_0006532 3300047318 Bacteria 4585
142 Ga0495636_0010900 3300047318 Bacteria 3596
143 Ga0495676_0009359 3300047321 Bacteria 8928
144 Ga0495676_0014718 3300047321 Bacteria 6988
145 Ga0495680_0010420 3300047322 Bacteria 8294
146 Ga0495683_0021436 3300047323 Bacteria 3330
147 Ga0495687_001885 3300047443 Bacteria 18089
148 Ga0495687_004899 3300047443 Bacteria 8778
149 Ga0495687_009696 3300047443 Bacteria 5355
150 Ga0495687_041730 3300047443 Bacteria 2010
151 Ga0495685_003799 3300047447 Bacteria 4835
152 Ga0495685_072165 3300047447 Bacteria 1155
153 Ga0495681_0072997 3300047470 Bacteria 1550
154 Ga0495686_0070743 3300047472 Bacteria 2149
155 Ga0495686_0074181 3300047472 Bacteria 2088
156 Ga0495593_0036582 3300047673 Bacteria 2661
157 Ga0495614_0036980 3300048089 Bacteria 2095
158 Ga0495626_0006810 3300048091 Bacteria 6456
159 Ga0495626_0007039 3300048091 Bacteria 6315
160 Ga0496102_0139443 3300048905 Bacteria 2273
161 Ga0495682_0046305 3300049460 Bacteria 1588
162 nmdc:mga00v17_73946_c1 3300050491 Bacteria 2117
163 nmdc:mga00v17_8915_c2 3300050491 Bacteria 4737
164 nmdc:mga0yw44_103746_c1 3300050492 Bacteria 1814
165 nmdc:mga0yw44_167444_c1 3300050492 Bacteria 1442
166 nmdc:mga06z11_14029_c1 3300050494 Bacteria 3536
167 nmdc:mga06z11_71529_c1 3300050494 Bacteria 1837
168 nmdc:mga04h51_35542_c1 3300050495 Bacteria 1598
169 Ga0495601_0088556 3300053077 Bacteria 1990
170 Ga0495612_0002249 3300053078 Bacteria 7938
171 Ga0495619_0101836 3300053085 Bacteria 1956
172 Ga0500573_0028359 3300053140 Bacteria 3224
173 Ga0590075_009646 3300059424 Bacteria 2316
174 Ga0466962_0025438 3300061719 Bacteria 2841
175 Ga0466962_0038650 3300061719 Bacteria 2285
176 2585316498 2582581314 Bacteria 11452267
177 2585317410 2582581314 Bacteria 11452267
178 2616701001 2616644814 Bacteria 11555299
179 2644442128 2643221678 Bacteria 9540101
180 2785346364 2784746763 Bacteria 9783172
181 2785365806 2784746768 Bacteria 10036182
182 2785372587 2784746768 Bacteria 10036182
183 2793979258 2791355406 Bacteria 11364898
184 2808847202 2808606359 Bacteria 9866990
185 2808918011 2808606375 Bacteria 9466072
186 2812360679 2811994879 Bacteria 9313447
187 2852639519 2852635781 Bacteria 8251373
188 2863407382 2863404153 Bacteria 9672205
189 2863411048 2863404153 Bacteria 9672205
190 2867476722 2867475112 Bacteria 6909112
191 2867477521 2867475112 Bacteria 6909112
192 2946065215 2946064051 Bacteria 8957905
193 2947232231 2947224130 Bacteria 9938529
194 2954381260 2954380949 Bacteria 10050426
195 2954691857 2954691527 Bacteria 10720516
196 2954692446 2954691527 Bacteria 10720516
197 2954706967 2954701450 Bacteria 10834262
198 2954707517 2954701450 Bacteria 10834262
199 2990066490 2990059506 Bacteria 9321252
200 2997455625 2997451912 Bacteria 8492419
201 2997455703 2997451912 Bacteria 8492419
202 2997601045 2997600082 Bacteria 9896405
203 3006487697 3006486233 Bacteria 8157040
204 8008560458 8008558824 Bacteria 10610750
205 8008560869 8008558824 Bacteria 10610750
206 8047903359 8047893842 Bacteria 11723082
207 8048365950 8048356638 Bacteria 11044339
208 8048379201 8048369669 Bacteria 11666822
209 8048388307 8048379754 Bacteria 11877923
210 8048407348 8048406513 Bacteria 8936924
211 8048407486 8048406513 Bacteria 8936924
212 8056830825 8056829672 Bacteria 9045328
213 Ga0466963_0088840
214 Ga0006562J51391_1085217
215 Ga0068853_100115469
216 Ga0070665_100156552
217 Ga0068855_100017065
218 Ga0068856_100019747
219 Ga0068856_100072444
220 Ga0075365_10193269
221 Ga0075364_10001956
222 Ga0075367_10126063
223 Ga0105237_10031134
224 Ga0105237_10098786
225 Ga0105239_10074370
226 Ga0182008_10001096
227 Ga0182005_1019540
228 Ga0207426_1000338
229 Ga0207426_1001838
230 Ga0207426_1034257
231 Ga0207647_10016029
232 Ga0207647_10130347
233 Ga0207695_10001504
234 Ga0207671_10033300
235 Ga0207679_10042175
236 Ga0207639_10091209
237 Ga0207702_10345838
238 Ga0209371_1025372
239 Ga0209813_10029843
240 Ga0268264_10000246
241 Ga0268256_1027716
242 Ga0307512_10001288
243 Ga0307508_10006081
244 Ga0307508_10008662
245 Ga0307508_10106069
246 Ga0307516_10041176
247 Ga0307516_10112080
248 Ga0307518_10004194
249 Ga0307510_10080243
250 Ga0395898_0007959
251 Ga0439439_0003728
252 Ga0451791_0088398
253 Ga0451833_0320918
254 Ga0451853_0576477
255 Ga0451853_1552484
256 Ga0451853_2391168
257 Ga0451853_3620091
258 Ga0439433_0000450
259 Ga0439442_019149
260 Ga0439449_0000399
261 Ga0439449_0002468
262 Ga0439457_000127
263 Ga0439457_000350
264 Ga0439457_003601
265 Ga0439457_011793
266 Ga0439462_0019536
267 Ga0450894_002013
268 Ga0450896_004326
269 Ga0450899_000086
270 Ga0450906_008749
271 Ga0450908_005824
272 Ga0466969_0009270
273 Ga0466969_0016743
274 Ga0466972_0016056
275 Ga0466965_0016415
276 Ga0466965_0037466
277 Ga0466966_0002379
278 Ga0466966_0008084
279 Ga0466966_0008497
280 Ga0466961_0000861
281 Ga0466961_0007099
282 Ga0466961_0022353
283 Ga0466963_0022370
284 Ga0466964_0009271
285 Ga0466964_0028953
286 Ga0466970_0000152
287 Ga0466957_0001037
288 Ga0466960_0028269
289 Ga0466959_0004274
290 Ga0466958_0047256
291 Ga0466967_0000293
292 Ga0495627_064287
293 Ga0495629_0004910
294 Ga0495629_0052940
295 Ga0495651_0012776
296 Ga0495605_0002987
297 Ga0495605_0004323
298 Ga0495662_0015011
299 Ga0495585_0068500
300 Ga0495594_0007019
301 Ga0495607_0052099
302 Ga0495583_0012003
303 Ga0495583_0026611
304 Ga0495606_0022070
305 Ga0495610_0074618
306 Ga0495616_0003107
307 Ga0495620_0001911
308 Ga0495620_0005483
309 Ga0495628_0012738
310 Ga0495628_0061994
311 Ga0495631_0002496
312 Ga0495632_0090204
313 Ga0495648_0122280
314 Ga0495666_0005079
315 Ga0495666_0015824
316 Ga0495652_0069825
317 Ga0495652_0114224
318 Ga0495640_0024815
319 Ga0495609_0019716
320 Ga0495609_0092631
321 Ga0495597_0005837
322 Ga0495597_0011685
323 Ga0495645_0060796
324 Ga0495622_0003139
325 Ga0495633_0021186
326 Ga0495668_0013167
327 Ga0495634_0055363
328 Ga0495634_0091985
329 Ga0495634_0097942
330 Ga0495611_0051449
331 Ga0495625_0033367
332 Ga0495625_0046935
333 Ga0495625_0116775
334 Ga0495635_0011600
335 Ga0495635_0021333
336 Ga0495657_0013592
337 Ga0495657_0014165
338 Ga0495623_0049367
339 Ga0495646_0015180
340 Ga0495613_0009342
341 Ga0495613_0009987
342 Ga0495624_0052874
343 Ga0495624_0071822
344 Ga0495624_0250020
345 Ga0495649_0007380
346 Ga0495589_0003483
347 Ga0495589_0045517
348 Ga0495600_0061900
349 Ga0495660_0037766
350 Ga0495660_0075069
351 Ga0495581_0098292
352 Ga0495604_0101425
353 Ga0495636_0006532
354 Ga0495636_0010900
355 Ga0495676_0009359
356 Ga0495676_0014718
357 Ga0495680_0010420
358 Ga0495683_0021436
359 Ga0495687_001885
360 Ga0495687_004899
361 Ga0495687_009696
362 Ga0495687_041730
363 Ga0495685_003799
364 Ga0495685_072165
365 Ga0495681_0072997
366 Ga0495686_0070743
367 Ga0495686_0074181
368 Ga0495593_0036582
369 Ga0495614_0036980
370 Ga0495626_0006810
371 Ga0495626_0007039
372 Ga0496102_0139443
373 Ga0495682_0046305
374 nmdc:mga00v17_73946_c1
375 nmdc:mga00v17_8915_c2
376 nmdc:mga0yw44_103746_c1
377 nmdc:mga0yw44_167444_c1
378 nmdc:mga06z11_14029_c1
379 nmdc:mga06z11_71529_c1
380 nmdc:mga04h51_35542_c1
381 Ga0495601_0088556
382 Ga0495612_0002249
383 Ga0495619_0101836
384 Ga0500573_0028359
385 Ga0590075_009646
386 Ga0466962_0025438
387 Ga0466962_0038650
388 2585316498
389 2585317410
390 2616701001
391 2644442128
392 2785346364
393 2785365806
394 2785372587
395 2793979258
396 2808847202
397 2808918011
398 2812360679
399 2852639519
400 2863407382
401 2863411048
402 2867476722
403 2867477521
404 2946065215
405 2947232231
406 2954381260
407 2954691857
408 2954692446
409 2954706967
410 2954707517
411 2990066490
412 2997455625
413 2997455703
414 2997601045
415 3006487697
416 8008560458
417 8008560869
418 8047903359
419 8048365950
420 8048379201
421 8048388307
422 8048407348
423 8048407486
424 8056830825

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

100

365

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7pu4-assembly2.cif.gz_C crystal structure of the dimer rbp-n and rbp-trunc from thermotoga maritima ribose binding protein 0.8804 83 169
4rwe-assembly1.cif.gz_A the crystal structure of a sugar-binding transport protein from yersinia pestis co92 0.8527 83 374
5hsg-assembly1.cif.gz_A crystal structure of an abc transporter solute binding protein from klebsiella pneumoniae (kpn_01730, target efi-511059), apo open structure 0.8501 83 367
2fn9-assembly2.cif.gz_B thermotoga maritima ribose binding protein unliganded form 0.8419 84 363
1drk-assembly1.cif.gz_A probing protein-protein interactions: the ribose-binding protein in bacterial transport and chemotaxis 0.8407 83 362
ID Description Score Start End Superfamily
1dbpA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.903 188 328 3.40.50.2300
2x7xB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9001 192 305 3.40.50.2300
5ibqA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8946 190 367 3.40.50.2300
1gudA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8933 188 328 3.40.50.2300
4rxmB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.89 83 169 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7H9UQ82-F1-model_v4 deleted 0.9196 52 386
AF-A0A7X8CMZ6-F1-model_v4 Substrate-binding domain-containing protein 0.9195 83 169 GO:0030246
GO:0030313
AF-A0A0P9C009-F1-model_v4 deleted 0.9163 52 386
AF-A0A377WIU6-F1-model_v4 Sugar ABC transporter 0.903 191 294 GO:0030246
GO:0030288
AF-A0A6H9S4L4-F1-model_v4 Substrate-binding domain-containing protein 0.9018 134 283

Map