F321860

General Info

Members Datasets Scaffolds Average Seq Length
211 162 189 327

Family's Representative Sequence

Representative Sequence 3300041405|Ga0439438_001126|Ga0439438_001126_3593_4678
Length 361
Sequence MQNMHELTTFKLASETFLDSNLQLINSAASEIFPMIAFDKLDLNLIRVFDAVMEERSVLRASQRLHLSQSAVSHALSRLRDSLNEEIFVRTGKGMTPTSYAFEISVPLRAALHSISLALSPADSAFKPKSVKRSFVIAANDYVSATLLPRLNRRLATLAPGINLMITPSTRLDLAEQIDLGRIDVAIGTFRSVPDRLRSLLLLLQDEVLVCSGVHPTGDNEVRLQDMAEFPLAVVSLGAEGAHSAYILERGLARQAEMYDREALERALAGAGLSVRRQIVLPHFLALPMLLEDSELLAIIPQPLAKTFARSLGFKIKSLPYPVTRQRLDMIWHMNNDNDAAQRWLQEQISAAALDISQTQD

Samples

Sample ID Description Type Environment
1 2511231021 Pseudomonas sp. GM78 Isolate Nodule
2 2643221607 Rhizobium sp. Root73 Isolate Unclassified
3 2643221618 Ensifer sp. Root231 Isolate Unclassified
4 2643221626 Ensifer sp. Root31 Isolate Unclassified
5 2643221655 Ensifer sp. Root1252 Isolate Unclassified
6 2643221659 Ensifer sp. Root127 Isolate Unclassified
7 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
8 2643221698 Ensifer sp. Root142 Isolate Unclassified
9 2643221712 Ensifer sp. Root258 Isolate Unclassified
10 2818991446 Variovorax sp. 1180 Isolate Unclassified
11 2842733646 Variovorax sp. R-72446 Isolate Unclassified
12 2844163670 Ensifer sp. 1H6 Isolate Unclassified
13 2899924645 Variovorax sp. 369 Isolate Unclassified
14 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
15 2904456579 Variovorax sp. 2002 Isolate Unclassified
16 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
17 2928037797 Variovorax sp. 1126 Isolate Unclassified
18 2928044640 Variovorax sp. 1128 Isolate Unclassified
19 2928051484 Variovorax sp. 1133 Isolate Unclassified
20 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
21 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere
22 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
23 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
24 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
25 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
26 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
27 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
28 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
29 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
30 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
31 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
32 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
33 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
34 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
35 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
36 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
37 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
38 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
39 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
40 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
41 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
42 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
43 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
44 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
45 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
46 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
47 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
48 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
49 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
60 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
61 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
62 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
63 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
64 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
67 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
69 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
70 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
76 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
81 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
89 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
92 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
98 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
99 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
100 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
101 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
102 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
103 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
104 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
105 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
106 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
107 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
108 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
109 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
110 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
111 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
112 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
113 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
114 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
115 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
116 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
117 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
118 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
119 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
120 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
121 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
122 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
123 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
124 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
125 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
126 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
127 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
128 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
129 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
130 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
131 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
132 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
133 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
134 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
135 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
136 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
137 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
138 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
139 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
140 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
141 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
142 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
143 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
144 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
145 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
146 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
147 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
148 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
149 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
150 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
151 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
152 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
153 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
154 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
155 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
157 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
158 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
159 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
160 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
161 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
162 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.57
Metatranscriptomes 0
Isolates 10.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 35.07
Nodule 0.47
Rhizoplane 6.16
Rhizosphere 40.76
Stem 0
Stem Tuber 0
Unclassified 17.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1001375 3300002773 Bacteria 10576
2 JGI25150J39212_1002308 3300002774 Bacteria 4805
3 JGI25159J45721_1001291 3300002987 Bacteria 10573
4 JGI25159J45721_1002377 3300002987 Bacteria 7171
5 JGI25151J46595_10002014 3300003187 Bacteria 12714
6 JGI25151J46595_10002992 3300003187 Bacteria 9630
7 JGI25151J46595_10017536 3300003187 Bacteria 3099
8 JGI25153J46596_10002489 3300003215 Bacteria 10576
9 rootL2_10258527 3300003322 Bacteria 3268
10 rootL2_10310239 3300003322 Bacteria 1392
11 rootH1_10148448 3300003323 Bacteria 1396
12 JGI25160J50197_1001738 3300003354 Bacteria 10579
13 JGI25161J50226_1000695 3300003374 Bacteria 13171
14 Ga0055535_1000343 3300003761 Bacteria 46486
15 Ga0055542_1000126 3300003762 Bacteria 100388
16 Ga0055526_1003156 3300003771 Bacteria 10677
17 Ga0055526_1012103 3300003771 Bacteria 3802
18 Ga0055537_1001260 3300003773 Bacteria 10579
19 Ga0055537_1002769 3300003773 Bacteria 5657
20 Ga0055524_1001116 3300003775 Bacteria 16180
21 Ga0055524_1002046 3300003775 Bacteria 10723
22 Ga0055536_1000058 3300003781 Bacteria 104496
23 Ga0055534_1001159 3300003784 Bacteria 11132
24 Ga0055534_1001239 3300003784 Bacteria 10576
25 Ga0055534_1003096 3300003784 Bacteria 5409
26 Ga0055528_1002224 3300003790 Bacteria 10579
27 Ga0055540_1015329 3300003792 Bacteria 2238
28 Ga0055531_10000522 3300003794 Bacteria 34548
29 Ga0055531_10003172 3300003794 Bacteria 10576
30 Ga0055543_1001127 3300004625 Bacteria 11467
31 Ga0065165_1003564 3300005262 Bacteria 10761
32 Ga0070658_10078457 3300005327 Bacteria 2711
33 Ga0070672_100227239 3300005543 Bacteria 1567
34 Ga0068858_100394789 3300005842 Bacteria 1328
35 Ga0075370_10038341 3300006353 Bacteria 2696
36 Ga0105251_10000028 3300009011 Bacteria 126517
37 Ga0105243_10035648 3300009148 Bacteria 3858
38 Ga0105249_10097155 3300009553 Bacteria 2765
39 Ga0157370_10129367 3300013104 Bacteria 2356
40 Ga0157369_10260537 3300013105 Unclassified 1808
41 Ga0171463_1010 3300013249 Bacteria 269975
42 Ga0163162_10032644 3300013306 Bacteria 5172
43 Ga0157375_10508977 3300013308 Bacteria 1368
44 Ga0157375_10663460 3300013308 Bacteria 1198
45 Ga0182008_10011027 3300014497 Bacteria 4819
46 Ga0157379_10363420 3300014968 Bacteria 1327
47 Ga0182006_1018288 3300015261 Bacteria 2963
48 Ga0182007_10007776 3300015262 Bacteria 4457
49 Ga0183362_10002 3300015683 Bacteria 1432711
50 Ga0183363_1257 3300015690 Bacteria 8805
51 Ga0163161_10039037 3300017792 Bacteria 3407
52 Ga0213875_10026973 3300021388 Bacteria 2733
53 Ga0209672_100223 3300025228 Bacteria 43877
54 Ga0209258_100018 3300025242 Bacteria 567561
55 Ga0207425_1000434 3300025245 Bacteria 27651
56 Ga0209148_1000030 3300025254 Bacteria 567582
57 Ga0209759_1003333 3300025256 Bacteria 6452
58 Ga0209129_1000030 3300025258 Bacteria 391958
59 Ga0209565_1000019 3300025263 Bacteria 438920
60 Ga0209565_1000069 3300025263 Bacteria 169585
61 Ga0209673_1000095 3300025273 Bacteria 197466
62 Ga0209130_1000011 3300025284 Bacteria 431723
63 Ga0209130_1001146 3300025284 Bacteria 19353
64 Ga0209130_1003884 3300025284 Bacteria 6016
65 Ga0209130_1005989 3300025284 Bacteria 4055
66 Ga0209130_1008874 3300025284 Bacteria 2922
67 Ga0209675_1000031 3300025291 Bacteria 273599
68 Ga0209675_1001718 3300025291 Bacteria 12064
69 Ga0209675_1007975 3300025291 Bacteria 3960
70 Ga0209676_1000210 3300025292 Bacteria 130159
71 Ga0209676_1002917 3300025292 Bacteria 11181
72 Ga0209025_1000051 3300025294 Bacteria 330080
73 Ga0209025_1000078 3300025294 Bacteria 271683
74 Ga0209025_1000183 3300025294 Bacteria 155799
75 Ga0209025_1001324 3300025294 Bacteria 33532
76 Ga0209025_1018715 3300025294 Bacteria 3903
77 Ga0209564_1000056 3300025295 Bacteria 340873
78 Ga0209564_1002290 3300025295 Bacteria 15602
79 Ga0209758_1000037 3300025297 Bacteria 439101
80 Ga0209758_1026334 3300025297 Bacteria 2521
81 Ga0209050_1004201 3300025298 Bacteria 9961
82 Ga0209256_1000043 3300025299 Bacteria 340873
83 Ga0209256_1000199 3300025299 Bacteria 113092
84 Ga0207426_1000029 3300025302 Bacteria 473835
85 Ga0207426_1005842 3300025302 Bacteria 5497
86 Ga0209051_1000369 3300025303 Bacteria 64656
87 Ga0209051_1001626 3300025303 Bacteria 18254
88 Ga0209051_1006253 3300025303 Bacteria 6751
89 Ga0209257_1000317 3300025304 Bacteria 101723
90 Ga0209257_1004565 3300025304 Bacteria 10598
91 Ga0209257_1004642 3300025304 Bacteria 10399
92 Ga0207655_1020449 3300025728 Bacteria 3401
93 Ga0207713_1001226 3300025735 Bacteria 21389
94 Ga0207709_10103333 3300025935 Bacteria 1888
95 Ga0207691_10224012 3300025940 Bacteria 1630
96 Ga0207648_10249477 3300026089 Unclassified 1582
97 Ga0307515_10000028 3300028794 Bacteria 368467
98 Ga0316183_1094818 3300030742 Bacteria 2500
99 Ga0307408_100088947 3300031548 Bacteria 2327
100 Ga0307412_10208449 3300031911 Bacteria 1489
101 Ga0395899_0003001 3300037312 Bacteria 13486
102 Ga0395900_0021729 3300037418 Bacteria 6560
103 Ga0395905_0000043 3300037471 Bacteria 247469
104 Ga0395905_0000498 3300037471 Bacteria 53933
105 Ga0395905_0001244 3300037471 Bacteria 31543
106 Ga0395905_0018878 3300037471 Bacteria 6540
107 Ga0395905_0091234 3300037471 Bacteria 2856
108 Ga0395905_0451477 3300037471 Bacteria 1183
109 Ga0436364_0096309 3300037853 Bacteria 2769
110 Ga0395901_0188761 3300038443 Bacteria 2161
111 Ga0439438_001126 3300041405 Bacteria 11903
112 Ga0439447_001986 3300041407 Bacteria 7517
113 Ga0439466_0001638 3300041411 Bacteria 8767
114 Ga0439432_001758 3300042006 Bacteria 8116
115 Ga0439452_000833 3300042010 Bacteria 14316
116 Ga0439464_0003452 3300042439 Bacteria 3985
117 Ga0466972_0045363 3300044658 Bacteria 2131
118 Ga0466965_0033461 3300044683 Bacteria 2512
119 Ga0466966_0144268 3300044684 Bacteria 1454
120 Ga0466957_0046125 3300044842 Bacteria 2645
121 Ga0495617_004399 3300046452 Bacteria 5134
122 Ga0495590_0008442 3300046457 Bacteria 3934
123 Ga0495638_0004486 3300046460 Bacteria 10575
124 Ga0495605_0001434 3300046474 Bacteria 15641
125 Ga0495605_0002049 3300046474 Bacteria 12710
126 Ga0495584_0015438 3300046491 Bacteria 3892
127 Ga0495583_0000123 3300046506 Bacteria 131122
128 Ga0495606_0002892 3300046507 Bacteria 18970
129 Ga0495606_0009486 3300046507 Bacteria 8221
130 Ga0495616_0001132 3300046513 Bacteria 18870
131 Ga0495620_0049978 3300046515 Bacteria 1786
132 Ga0495631_0000360 3300046518 Bacteria 31385
133 Ga0495632_0020835 3300046519 Bacteria 3542
134 Ga0495637_0001179 3300046520 Bacteria 15958
135 Ga0495648_0000847 3300046524 Bacteria 32274
136 Ga0495663_0012437 3300046525 Bacteria 2371
137 Ga0495642_0013294 3300046528 Bacteria 3182
138 Ga0495654_0048442 3300046530 Bacteria 2085
139 Ga0495656_0001204 3300046615 Bacteria 8426
140 Ga0495668_0014804 3300046616 Bacteria 4566
141 Ga0495625_0014260 3300046660 Bacteria 6353
142 Ga0495661_0007845 3300046665 Bacteria 7427
143 Ga0495669_0055179 3300046684 Bacteria 1789
144 Ga0495649_0001753 3300046694 Bacteria 16001
145 Ga0495589_0013219 3300046794 Bacteria 4259
146 Ga0495660_0001306 3300046810 Bacteria 17241
147 Ga0495672_0080995 3300047320 Bacteria 1809
148 Ga0495673_0000465 3300047469 Bacteria 43951
149 Ga0495673_0000565 3300047469 Bacteria 37699
150 Ga0495681_0002382 3300047470 Bacteria 13461
151 Ga0495615_0001664 3300048090 Bacteria 3362
152 Ga0495615_0006630 3300048090 Bacteria 2157
153 Ga0495626_0000269 3300048091 Bacteria 57715
154 Ga0496100_0022413 3300048903 Bacteria 3822
155 Ga0496101_0010230 3300048904 Bacteria 6191
156 Ga0496102_0001354 3300048905 Bacteria 21939
157 Ga0496102_0001358 3300048905 Bacteria 21905
158 Ga0496103_0011844 3300048906 Bacteria 5176
159 Ga0496104_0001069 3300048907 Bacteria 23359
160 Ga0496106_0014962 3300048909 Bacteria 5740
161 Ga0496108_0079332 3300048911 Bacteria 2779
162 Ga0496109_0029936 3300048912 Bacteria 4879
163 Ga0496110_0008405 3300048913 Bacteria 8306
164 Ga0496110_0013563 3300048913 Bacteria 6743
165 Ga0496111_0110002 3300048914 Bacteria 2029
166 Ga0496114_0054483 3300048917 Bacteria 3335
167 Ga0496117_0012922 3300048920 Bacteria 7317
168 Ga0496117_0040057 3300048920 Bacteria 3451
169 Ga0496117_0115644 3300048920 Bacteria 1660
170 Ga0496118_0003782 3300048921 Bacteria 18691
171 Ga0496121_0002061 3300048924 Bacteria 31811
172 Ga0496121_0002175 3300048924 Bacteria 30701
173 Ga0496121_0003711 3300048924 Bacteria 21416
174 Ga0496121_0025087 3300048924 Bacteria 5674
175 Ga0496122_0007464 3300048925 Bacteria 12136
176 Ga0496122_0079761 3300048925 Bacteria 2286
177 Ga0496123_0005908 3300048926 Bacteria 12083
178 Ga0496124_0088225 3300048927 Bacteria 2536
179 Ga0496125_0005333 3300048928 Bacteria 14362
180 Ga0495682_0085284 3300049460 Bacteria 1135
181 Ga0501034_0429046 3300049571 Bacteria 1242
182 Ga0501262_000107 3300049759 Bacteria 10202
183 nmdc:mga07m45_5691_c1 3300050496 Bacteria 2786
184 nmdc:mga07m45_7095_c2 3300050496 Bacteria 3373
185 Ga0500578_0028923 3300053086 Bacteria 3559
186 Ga0500559_0018411 3300053136 Bacteria 2952
187 Ga0500573_0003786 3300053140 Bacteria 7891
188 Ga0500645_005054 3300053730 Bacteria 4930
189 Ga0500661_013647 3300055283 Bacteria 1464

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013308 Ga0157375_10508977 Ga0157375_105089771 270
2 3300013249 Ga0171463_1010 Ga0171463_1010152 293
3 3300015690 Ga0183363_1257 Ga0183363_12578 293
4 3300049460 Ga0495682_0085284 Ga0495682_0085284_170_1105 304
5 3300048911 Ga0496108_0079332 Ga0496108_0079332_1095_2075 305
6 3300048912 Ga0496109_0029936 Ga0496109_0029936_2048_3028 305
7 3300048913 Ga0496110_0008405 Ga0496110_0008405_6802_7782 305
8 3300048914 Ga0496111_0110002 Ga0496111_0110002_916_1896 305
9 3300025294 Ga0209025_1001324 Ga0209025_100132427 308
10 3300005543 Ga0070672_100227239 Ga0070672_1002272391 309
11 3300005842 Ga0068858_100394789 Ga0068858_1003947891 309
12 3300013306 Ga0163162_10032644 Ga0163162_100326445 309
13 3300017792 Ga0163161_10039037 Ga0163161_100390373 309
14 3300025940 Ga0207691_10224012 Ga0207691_102240121 309
15 3300046665 Ga0495661_0007845 Ga0495661_0007845_1382_2344 309
16 3300048903 Ga0496100_0022413 Ga0496100_0022413_2167_3147 309
17 3300048905 Ga0496102_0001354 Ga0496102_0001354_18407_19387 309
18 3300048906 Ga0496103_0011844 Ga0496103_0011844_909_1889 309
19 3300048907 Ga0496104_0001069 Ga0496104_0001069_916_1896 309
20 3300048909 Ga0496106_0014962 Ga0496106_0014962_708_1688 309
21 3300048913 Ga0496110_0013563 Ga0496110_0013563_2462_3442 309
22 3300048917 Ga0496114_0054483 Ga0496114_0054483_128_1108 309
23 iso_pu_bacteria 2643221607 2644048792 313
24 iso_pu_bacteria 2643221618 2644110457 313
25 iso_pu_bacteria 2643221626 2644144990 313
26 iso_pu_bacteria 2643221655 2644307209 313
27 iso_pu_bacteria 2643221659 2644337091 313
28 iso_pu_bacteria 2643221686 2644481593 313
29 iso_pu_bacteria 2643221698 2644540583 313
30 iso_pu_bacteria 2643221712 2644613289 313
31 iso_pu_bacteria 2904449895 2904456510 315
32 iso_pu_bacteria 2904456579 2904461492 315
33 3300044684 Ga0466966_0144268 Ga0466966_0144268_408_1358 316
34 3300044842 Ga0466957_0046125 Ga0466957_0046125_1256_2206 316
35 3300049571 Ga0501034_0429046 Ga0501034_0429046_66_1046 316
36 iso_pu_bacteria 2844163670 2844168743 316
37 iso_pu_bacteria 2904541872 2904543781 317
38 iso_pu_bacteria 2929160207 2929162666 317
39 3300030742 Ga0316183_1094818 Ga0316183_10948182 318
40 iso_pu_bacteria 2511231021 2511359795 318
41 3300003794 Ga0055531_10000522 Ga0055531_1000052217 319
42 3300021388 Ga0213875_10026973 Ga0213875_100269731 319
43 3300025303 Ga0209051_1000369 Ga0209051_100036962 319
44 3300025304 Ga0209257_1000317 Ga0209257_100031741 319
45 3300037471 Ga0395905_0000498 Ga0395905_0000498_22738_23703 319
46 3300037853 Ga0436364_0096309 Ga0436364_0096309_1702_2694 319
47 3300041405 Ga0439438_001126 Ga0439438_001126_3593_4678 319
48 3300041407 Ga0439447_001986 Ga0439447_001986_4376_5461 319
49 3300041411 Ga0439466_0001638 Ga0439466_0001638_2057_3142 319
50 3300042006 Ga0439432_001758 Ga0439432_001758_5578_6663 319
51 3300042010 Ga0439452_000833 Ga0439452_000833_6313_7398 319
52 3300044658 Ga0466972_0045363 Ga0466972_0045363_14_979 319
53 3300049759 Ga0501262_000107 Ga0501262_000107_7939_8904 319
54 3300050496 nmdc:mga07m45_7095_c2 nmdc:mga07m45_7095_c2_1528_2493 319
55 3300002987 JGI25159J45721_1002377 JGI25159J45721_10023773 320
56 3300025284 Ga0209130_1001146 Ga0209130_100114610 320
57 3300026089 Ga0207648_10249477 Ga0207648_102494772 320
58 iso_pu_bacteria 2818991446 2819601038 320
59 iso_pu_bacteria 2842733646 2842736586 320
60 iso_pu_bacteria 2899924645 2899927885 320
61 iso_pu_bacteria 2928037797 2928044471 320
62 iso_pu_bacteria 2928044640 2928051325 320
63 iso_pu_bacteria 2928051484 2928056340 320
64 iso_pu_bacteria 2945972063 2945972569 320
65 3300009148 Ga0105243_10035648 Ga0105243_100356485 321
66 3300013105 Ga0157369_10260537 Ga0157369_102605372 321
67 3300025294 Ga0209025_1000183 Ga0209025_1000183107 321
68 3300025935 Ga0207709_10103333 Ga0207709_101033332 321
69 3300042439 Ga0439464_0003452 Ga0439464_0003452_321_1289 321
70 3300046452 Ga0495617_004399 Ga0495617_004399_2092_3090 321
71 3300046460 Ga0495638_0004486 Ga0495638_0004486_76_1065 321
72 3300046474 Ga0495605_0001434 Ga0495605_0001434_197_1195 321
73 3300046491 Ga0495584_0015438 Ga0495584_0015438_2218_3216 321
74 3300046507 Ga0495606_0002892 Ga0495606_0002892_5881_6879 321
75 3300046513 Ga0495616_0001132 Ga0495616_0001132_5833_6831 321
76 3300046515 Ga0495620_0049978 Ga0495620_0049978_44_1042 321
77 3300046518 Ga0495631_0000360 Ga0495631_0000360_12896_13894 321
78 3300046519 Ga0495632_0020835 Ga0495632_0020835_1601_2590 321
79 3300046520 Ga0495637_0001179 Ga0495637_0001179_9121_10119 321
80 3300046524 Ga0495648_0000847 Ga0495648_0000847_22314_23303 321
81 3300046530 Ga0495654_0048442 Ga0495654_0048442_48_1046 321
82 3300046810 Ga0495660_0001306 Ga0495660_0001306_7594_8592 321
83 3300047320 Ga0495672_0080995 Ga0495672_0080995_382_1380 321
84 3300047469 Ga0495673_0000465 Ga0495673_0000465_16324_17313 321
85 3300047469 Ga0495673_0000565 Ga0495673_0000565_5319_6317 321
86 3300047470 Ga0495681_0002382 Ga0495681_0002382_9009_10007 321
87 3300048091 Ga0495626_0000269 Ga0495626_0000269_47761_48807 321
88 3300048920 Ga0496117_0040057 Ga0496117_0040057_1887_2885 321
89 3300048921 Ga0496118_0003782 Ga0496118_0003782_1931_2929 321
90 3300048924 Ga0496121_0003711 Ga0496121_0003711_190_1158 321
91 3300009011 Ga0105251_10000028 Ga0105251_1000002849 322
92 3300025728 Ga0207655_1020449 Ga0207655_10204496 322
93 3300025735 Ga0207713_1001226 Ga0207713_100122620 322
94 3300044683 Ga0466965_0033461 Ga0466965_0033461_797_1792 322
95 3300048924 Ga0496121_0002175 Ga0496121_0002175_21667_22656 322
96 3300048925 Ga0496122_0007464 Ga0496122_0007464_8867_9856 322
97 3300048926 Ga0496123_0005908 Ga0496123_0005908_8846_9835 322
98 3300003187 JGI25151J46595_10002014 JGI25151J46595_1000201413 324
99 3300003187 JGI25151J46595_10017536 JGI25151J46595_100175362 324
100 3300003322 rootL2_10258527 rootL2_102585274 324
101 3300003322 rootL2_10310239 rootL2_103102392 324
102 3300003323 rootH1_10148448 rootH1_101484482 324
103 3300003761 Ga0055535_1000343 Ga0055535_100034317 324
104 3300003762 Ga0055542_1000126 Ga0055542_100012611 324
105 3300003771 Ga0055526_1012103 Ga0055526_10121033 324
106 3300003773 Ga0055537_1002769 Ga0055537_10027692 324
107 3300003775 Ga0055524_1001116 Ga0055524_10011162 324
108 3300003781 Ga0055536_1000058 Ga0055536_100005812 324
109 3300003784 Ga0055534_1001159 Ga0055534_10011592 324
110 3300003784 Ga0055534_1003096 Ga0055534_10030964 324
111 3300005327 Ga0070658_10078457 Ga0070658_100784573 324
112 3300006353 Ga0075370_10038341 Ga0075370_100383414 324
113 3300013104 Ga0157370_10129367 Ga0157370_101293672 324
114 3300013308 Ga0157375_10663460 Ga0157375_106634601 324
115 3300014497 Ga0182008_10011027 Ga0182008_100110277 324
116 3300014968 Ga0157379_10363420 Ga0157379_103634201 324
117 3300015261 Ga0182006_1018288 Ga0182006_10182884 324
118 3300015262 Ga0182007_10007776 Ga0182007_100077763 324
119 3300015683 Ga0183362_10002 Ga0183362_100021085 324
120 3300025228 Ga0209672_100223 Ga0209672_10022332 324
121 3300025242 Ga0209258_100018 Ga0209258_10001852 324
122 3300025254 Ga0209148_1000030 Ga0209148_100003052 324
123 3300025263 Ga0209565_1000069 Ga0209565_10000692 324
124 3300025284 Ga0209130_1003884 Ga0209130_10038842 324
125 3300025284 Ga0209130_1005989 Ga0209130_10059893 324
126 3300025291 Ga0209675_1001718 Ga0209675_100171811 324
127 3300025291 Ga0209675_1007975 Ga0209675_10079753 324
128 3300025292 Ga0209676_1000210 Ga0209676_100021017 324
129 3300025294 Ga0209025_1000051 Ga0209025_1000051203 324
130 3300025294 Ga0209025_1018715 Ga0209025_10187153 324
131 3300025295 Ga0209564_1002290 Ga0209564_10022902 324
132 3300025297 Ga0209758_1026334 Ga0209758_10263343 324
133 3300025299 Ga0209256_1000199 Ga0209256_1000199110 324
134 3300025302 Ga0207426_1005842 Ga0207426_10058423 324
135 3300025303 Ga0209051_1001626 Ga0209051_100162610 324
136 3300025304 Ga0209257_1004642 Ga0209257_10046422 324
137 3300031911 Ga0307412_10208449 Ga0307412_102084492 324
138 3300037312 Ga0395899_0003001 Ga0395899_0003001_7991_8971 324
139 3300037418 Ga0395900_0021729 Ga0395900_0021729_1769_2749 324
140 3300037471 Ga0395905_0001244 Ga0395905_0001244_5357_6352 324
141 3300037471 Ga0395905_0018878 Ga0395905_0018878_4458_5438 324
142 3300037471 Ga0395905_0451477 Ga0395905_0451477_69_1049 324
143 3300038443 Ga0395901_0188761 Ga0395901_0188761_853_1833 324
144 3300046474 Ga0495605_0002049 Ga0495605_0002049_3010_4020 324
145 3300046525 Ga0495663_0012437 Ga0495663_0012437_526_1506 324
146 3300046528 Ga0495642_0013294 Ga0495642_0013294_1983_2963 324
147 3300046615 Ga0495656_0001204 Ga0495656_0001204_2071_3084 324
148 3300046684 Ga0495669_0055179 Ga0495669_0055179_597_1577 324
149 3300048090 Ga0495615_0001664 Ga0495615_0001664_487_1500 324
150 3300048090 Ga0495615_0006630 Ga0495615_0006630_1022_2002 324
151 3300048904 Ga0496101_0010230 Ga0496101_0010230_4938_5918 324
152 3300048905 Ga0496102_0001358 Ga0496102_0001358_11574_12554 324
153 3300048920 Ga0496117_0115644 Ga0496117_0115644_216_1205 324
154 3300048924 Ga0496121_0002061 Ga0496121_0002061_26138_27157 324
155 3300048927 Ga0496124_0088225 Ga0496124_0088225_636_1625 324
156 3300048928 Ga0496125_0005333 Ga0496125_0005333_12043_13062 324
157 3300053086 Ga0500578_0028923 Ga0500578_0028923_337_1350 324
158 3300053136 Ga0500559_0018411 Ga0500559_0018411_1298_2305 324
159 3300053730 Ga0500645_005054 Ga0500645_005054_969_1982 324
160 3300009553 Ga0105249_10097155 Ga0105249_100971554 325
161 3300028794 Ga0307515_10000028 Ga0307515_1000002854 325
162 3300046457 Ga0495590_0008442 Ga0495590_0008442_1219_2247 325
163 3300053140 Ga0500573_0003786 Ga0500573_0003786_4606_5622 325
164 3300002773 JGI25152J39213_1001375 JGI25152J39213_10013758 326
165 3300002774 JGI25150J39212_1002308 JGI25150J39212_10023082 326
166 3300002987 JGI25159J45721_1001291 JGI25159J45721_10012918 326
167 3300003187 JGI25151J46595_10002992 JGI25151J46595_100029927 326
168 3300003215 JGI25153J46596_10002489 JGI25153J46596_100024898 326
169 3300003354 JGI25160J50197_1001738 JGI25160J50197_10017388 326
170 3300003374 JGI25161J50226_1000695 JGI25161J50226_10006958 326
171 3300003771 Ga0055526_1003156 Ga0055526_10031568 326
172 3300003773 Ga0055537_1001260 Ga0055537_10012608 326
173 3300003775 Ga0055524_1002046 Ga0055524_10020467 326
174 3300003784 Ga0055534_1001239 Ga0055534_10012398 326
175 3300003790 Ga0055528_1002224 Ga0055528_10022247 326
176 3300003792 Ga0055540_1015329 Ga0055540_10153292 326
177 3300003794 Ga0055531_10003172 Ga0055531_100031727 326
178 3300004625 Ga0055543_1001127 Ga0055543_10011277 326
179 3300005262 Ga0065165_1003564 Ga0065165_10035648 326
180 3300025245 Ga0207425_1000434 Ga0207425_10004346 326
181 3300025256 Ga0209759_1003333 Ga0209759_10033332 326
182 3300025258 Ga0209129_1000030 Ga0209129_100003085 326
183 3300025263 Ga0209565_1000019 Ga0209565_1000019157 326
184 3300025273 Ga0209673_1000095 Ga0209673_100009576 326
185 3300025284 Ga0209130_1000011 Ga0209130_1000011149 326
186 3300025284 Ga0209130_1008874 Ga0209130_10088743 326
187 3300025291 Ga0209675_1000031 Ga0209675_10000317 326
188 3300025292 Ga0209676_1002917 Ga0209676_10029173 326
189 3300025294 Ga0209025_1000078 Ga0209025_10000785 326
190 3300025295 Ga0209564_1000056 Ga0209564_100005672 326
191 3300025297 Ga0209758_1000037 Ga0209758_1000037254 326
192 3300025298 Ga0209050_1004201 Ga0209050_10042013 326
193 3300025299 Ga0209256_1000043 Ga0209256_100004372 326
194 3300025302 Ga0207426_1000029 Ga0207426_1000029254 326
195 3300025303 Ga0209051_1006253 Ga0209051_10062536 326
196 3300025304 Ga0209257_1004565 Ga0209257_10045655 326
197 3300031548 Ga0307408_100088947 Ga0307408_1000889472 326
198 3300037471 Ga0395905_0000043 Ga0395905_0000043_906_1895 326
199 3300037471 Ga0395905_0091234 Ga0395905_0091234_588_1604 326
200 3300046506 Ga0495583_0000123 Ga0495583_0000123_2223_3287 326
201 3300046507 Ga0495606_0009486 Ga0495606_0009486_5510_6574 326
202 3300046616 Ga0495668_0014804 Ga0495668_0014804_2797_3861 326
203 3300046660 Ga0495625_0014260 Ga0495625_0014260_1780_2844 326
204 3300046694 Ga0495649_0001753 Ga0495649_0001753_5454_6518 326
205 3300046794 Ga0495589_0013219 Ga0495589_0013219_21_1022 326
206 3300048920 Ga0496117_0012922 Ga0496117_0012922_6288_7283 326
207 3300048924 Ga0496121_0025087 Ga0496121_0025087_2848_3843 326
208 3300048925 Ga0496122_0079761 Ga0496122_0079761_568_1563 326
209 3300050496 nmdc:mga07m45_5691_c1 nmdc:mga07m45_5691_c1_1388_2416 326
210 3300055283 Ga0500661_013647 Ga0500661_013647_207_1235 326
211 iso_pu_bacteria 2954767861 2954768392 326

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

43

101

0.97

PF03466

LysR_substrate

LysR substrate binding domain

128

353

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.9328 6 85
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.9321 6 85
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9216 6 85
4iht-assembly1.cif.gz_A crystal structure of benm_dbd/bena site 1 dna complex 0.9212 6 85
4ldz-assembly1.cif.gz_B crystal structure of the full-length response regulator desr in the active state 0.9182 5 49
ID Description Score Start End Superfamily
af_P9WPH5_284_409_1.10.10.2840 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;PucR C-terminal helix-turn-helix domain 0.9722 9 51 1.10.10.2840
af_P52696_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9583 7 85 1.10.10.10
af_P0ACR4_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9539 7 85 1.10.10.10
af_P36771_5_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9533 5 85 1.10.10.10
af_P0A8R9_1_82_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9522 6 85 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4P0Y4W3-F1-model_v4 LysR family transcriptional regulator 0.8738 88 317 GO:0006355
AF-A0A4Q3PYZ3-F1-model_v4 deleted 0.7891 96 318
AF-A0A4P0Y4W3-F1-model_v4 LysR family transcriptional regulator 0.7649 88 317 GO:0006355
AF-A0A4Q3PYZ3-F1-model_v4 deleted 0.7538 96 318
AF-A0A7Y8KE52-F1-model_v4 LysR family transcriptional regulator 0.7487 55 319 GO:0006355

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pLDDT pTM Quality
88.91 0.71 High
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Predicted Structure (AlphaFold2)

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