F319472

General Info

Members Datasets Scaffolds Average Seq Length
209 153 209 204

Family's Representative Sequence

Representative Sequence 3300046476|Ga0495662_0001700|Ga0495662_0001700_3693_4295
Length 200
Sequence VIDGHPVVRLGVREVLEDGFVVHECESREEALDLVQDVGDFDVAIIDMRWRGDGDGEAVRISGPEAIKLLRRSAPSLGIVAHGELPERHLASAAMGAGAAAYVARTAGPAELRRAVDAAASLETFVDPAVPPKGSRGKLTRRQREILQLLAYGESTTVAARQLDVSEETVKTHTKHALARLGAKNRTHAVAIALRECLID

Samples

Sample ID Description Type Environment
1 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
28 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
29 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
44 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
82 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
83 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
84 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
89 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
90 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
91 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
94 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
95 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
96 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
97 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
98 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
99 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
100 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
101 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
102 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
103 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
104 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
105 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
106 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
107 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
108 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
109 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
110 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
111 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
112 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
113 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
114 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
115 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
116 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
117 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
118 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
119 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
120 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
121 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
122 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
123 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
124 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
125 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
126 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
127 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
128 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
129 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
130 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
131 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
132 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
133 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
134 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
135 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
136 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
137 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
138 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
139 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
140 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
142 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
143 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
146 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
147 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
148 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
149 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
150 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
151 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
152 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
153 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.52
Metatranscriptomes 0.48
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.48
Nodule 0
Rhizoplane 11.96
Rhizosphere 83.25
Stem 0
Stem Tuber 0
Unclassified 4.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10018548 3300002459 Bacteria 1439
2 Ga0070683_100042601 3300005329 Bacteria 4181
3 Ga0070682_100000030 3300005337 Bacteria 182768
4 Ga0070682_100000171 3300005337 Bacteria 48470
5 Ga0068868_100000225 3300005338 Bacteria 38457
6 Ga0070689_100058585 3300005340 Bacteria 2991
7 Ga0070661_100000035 3300005344 Bacteria 111363
8 Ga0070688_100001268 3300005365 Bacteria 12586
9 Ga0070659_100005337 3300005366 Bacteria 9220
10 Ga0070713_100000010 3300005436 Bacteria 151790
11 Ga0070713_100025217 3300005436 Bacteria 4645
12 Ga0070711_100087047 3300005439 Bacteria 2242
13 Ga0070678_100000345 3300005456 Bacteria 21680
14 Ga0070662_100000006 3300005457 Bacteria 169366
15 Ga0070681_10106230 3300005458 Bacteria 2749
16 Ga0068867_100000295 3300005459 Bacteria 32708
17 Ga0070685_10001413 3300005466 Bacteria 12586
18 Ga0070685_10603269 3300005466 Bacteria 790
19 Ga0070679_100000225 3300005530 Bacteria 46317
20 Ga0070684_100014810 3300005535 Bacteria 6328
21 Ga0070684_100047427 3300005535 Bacteria 3723
22 Ga0070672_100000006 3300005543 Bacteria 117060
23 Ga0070665_100000040 3300005548 Bacteria 305480
24 Ga0070665_100008395 3300005548 Bacteria 10448
25 Ga0070665_100046548 3300005548 Bacteria 4357
26 Ga0068855_100391652 3300005563 Bacteria 1524
27 Ga0068854_100000237 3300005578 Bacteria 37524
28 Ga0068854_100053855 3300005578 Unclassified 2891
29 Ga0068856_100029013 3300005614 Bacteria 5406
30 Ga0068856_100342569 3300005614 Bacteria 1513
31 Ga0068852_100147622 3300005616 Bacteria 2183
32 Ga0068864_100000015 3300005618 Bacteria 303368
33 Ga0068866_10001671 3300005718 Bacteria 9349
34 Ga0068866_10084888 3300005718 Bacteria 1710
35 Ga0068851_10001578 3300005834 Bacteria 10004
36 Ga0068851_10009301 3300005834 Bacteria 4563
37 Ga0068858_100000319 3300005842 Bacteria 51080
38 Ga0070715_10000014 3300006163 Bacteria 154272
39 Ga0070712_100000353 3300006175 Bacteria 26043
40 Ga0068865_100000140 3300006881 Bacteria 38055
41 Ga0075435_100058432 3300007076 Bacteria 3124
42 Ga0105240_11260232 3300009093 Bacteria 781
43 Ga0105245_10000212 3300009098 Bacteria 55133
44 Ga0105245_10001002 3300009098 Bacteria 25634
45 Ga0105245_10007310 3300009098 Bacteria 9669
46 Ga0105243_10131958 3300009148 Bacteria 2120
47 Ga0105238_10000048 3300009551 Bacteria 146322
48 Ga0105249_10000070 3300009553 Bacteria 147277
49 Ga0105249_10046590 3300009553 Bacteria 3946
50 Ga0105239_10050291 3300010375 Bacteria 4572
51 Ga0157378_10007104 3300013297 Bacteria 9776
52 Ga0157372_10004870 3300013307 Bacteria 14268
53 Ga0157380_10000149 3300014326 Bacteria 39858
54 Ga0157380_10000261 3300014326 Bacteria 31504
55 Ga0157379_10007056 3300014968 Bacteria 9711
56 Ga0157376_10011312 3300014969 Bacteria 6572
57 Ga0163161_10403729 3300017792 Bacteria 1096
58 Ga0206353_11669443 3300020082 Unclassified 1798
59 Ga0207656_10002200 3300025321 Bacteria 6527
60 Ga0207656_10005231 3300025321 Bacteria 4569
61 Ga0207682_10000180 3300025893 Bacteria 28686
62 Ga0207642_10000872 3300025899 Bacteria 9428
63 Ga0207642_10228825 3300025899 Bacteria 1043
64 Ga0207685_10000025 3300025905 Bacteria 110358
65 Ga0207695_10594762 3300025913 Bacteria 987
66 Ga0207693_10006121 3300025915 Bacteria 9974
67 Ga0207663_10188613 3300025916 Bacteria 1479
68 Ga0207657_10137856 3300025919 Unclassified 1995
69 Ga0207649_10000028 3300025920 Bacteria 161482
70 Ga0207652_10000309 3300025921 Bacteria 50266
71 Ga0207694_10000056 3300025924 Bacteria 146908
72 Ga0207659_10000022 3300025926 Bacteria 143432
73 Ga0207687_10000020 3300025927 Bacteria 228407
74 Ga0207687_10000031 3300025927 Bacteria 150246
75 Ga0207687_10000079 3300025927 Bacteria 70683
76 Ga0207687_10004101 3300025927 Bacteria 9763
77 Ga0207700_10000007 3300025928 Bacteria 345720
78 Ga0207700_10062273 3300025928 Bacteria 2833
79 Ga0207690_10003023 3300025932 Bacteria 10121
80 Ga0207690_10019048 3300025932 Bacteria 4217
81 Ga0207706_10000017 3300025933 Bacteria 169589
82 Ga0207686_10006267 3300025934 Bacteria 6398
83 Ga0207709_10020598 3300025935 Bacteria 3723
84 Ga0207670_10063341 3300025936 Bacteria 2530
85 Ga0207669_10000017 3300025937 Bacteria 119878
86 Ga0207704_10000360 3300025938 Bacteria 21224
87 Ga0207691_10000025 3300025940 Bacteria 129424
88 Ga0207661_10001241 3300025944 Bacteria 17032
89 Ga0207661_10002602 3300025944 Bacteria 12416
90 Ga0207661_10013737 3300025944 Bacteria 5914
91 Ga0207712_10000019 3300025961 Bacteria 317060
92 Ga0207712_10044699 3300025961 Bacteria 3062
93 Ga0207640_10000248 3300025981 Bacteria 36585
94 Ga0207640_10017114 3300025981 Bacteria 4234
95 Ga0207677_10000508 3300026023 Bacteria 25092
96 Ga0207703_10000166 3300026035 Bacteria 76553
97 Ga0207639_10053131 3300026041 Bacteria 3090
98 Ga0207678_10396406 3300026067 Bacteria 1195
99 Ga0207702_10020977 3300026078 Bacteria 5406
100 Ga0207648_10002595 3300026089 Bacteria 19350
101 Ga0207676_10000018 3300026095 Bacteria 306375
102 Ga0207683_10001994 3300026121 Bacteria 18063
103 Ga0207698_10065265 3300026142 Bacteria 2858
104 Ga0268266_10000045 3300028379 Bacteria 312955
105 Ga0268266_10001339 3300028379 Bacteria 29819
106 Ga0268266_10014906 3300028379 Bacteria 6675
107 Ga0268266_10016916 3300028379 Bacteria 6231
108 Ga0268264_10277371 3300028381 Bacteria 1568
109 Ga0373953_0040734 3300035117 Bacteria 1846
110 Ga0373937_0136716 3300036401 Bacteria 2291
111 Ga0316582_0340197 3300036647 Bacteria 1032
112 Ga0451853_1302818 3300041512 Bacteria 925
113 Ga0451853_3490516 3300041512 Bacteria 9405
114 Ga0466963_0000289 3300044694 Bacteria 22666
115 Ga0466963_0006005 3300044694 Bacteria 7157
116 Ga0466963_0038123 3300044694 Bacteria 3142
117 Ga0466957_0071365 3300044842 Unclassified 2148
118 Ga0466967_0000017 3300045976 Bacteria 89904
119 Ga0495603_0001286 3300046455 Bacteria 14630
120 Ga0495603_0020677 3300046455 Bacteria 3986
121 Ga0495629_0003726 3300046459 Bacteria 11487
122 Ga0495641_0000014 3300046461 Bacteria 140908
123 Ga0495641_0055386 3300046461 Bacteria 1801
124 Ga0495662_0001700 3300046476 Bacteria 10995
125 Ga0495606_0000108 3300046507 Bacteria 140473
126 Ga0495608_0000036 3300046511 Bacteria 129609
127 Ga0495608_0069207 3300046511 Bacteria 2306
128 Ga0495620_0000797 3300046515 Bacteria 19341
129 Ga0495628_0001454 3300046516 Bacteria 21724
130 Ga0495628_0015704 3300046516 Bacteria 6321
131 Ga0495628_0271292 3300046516 Bacteria 1262
132 Ga0495652_0000023 3300046529 Bacteria 168049
133 Ga0495586_0445580 3300046535 Bacteria 746
134 Ga0495587_0064213 3300046536 Bacteria 2145
135 Ga0495621_0003529 3300046539 Bacteria 4316
136 Ga0495645_0099392 3300046543 Bacteria 2070
137 Ga0495635_0035063 3300046663 Bacteria 3479
138 Ga0495588_0000149 3300046674 Bacteria 100598
139 Ga0495657_0000001 3300046675 Bacteria 445641
140 Ga0495599_0007290 3300046678 Bacteria 6698
141 Ga0495658_0000306 3300046683 Bacteria 27840
142 Ga0495658_0001601 3300046683 Bacteria 11790
143 Ga0495669_0000635 3300046684 Bacteria 15272
144 Ga0495613_0000481 3300046689 Bacteria 34000
145 Ga0495624_0000038 3300046690 Bacteria 83368
146 Ga0495670_0012288 3300046691 Bacteria 4208
147 Ga0495649_0001181 3300046694 Bacteria 20231
148 Ga0495600_0037837 3300046809 Bacteria 3138
149 Ga0495660_0136749 3300046810 Unclassified 1224
150 Ga0495604_0000122 3300047317 Bacteria 65938
151 Ga0495676_0002391 3300047321 Bacteria 16661
152 Ga0495676_0192863 3300047321 Unclassified 1420
153 Ga0495680_0005747 3300047322 Bacteria 11610
154 Ga0495675_0000037 3300047444 Bacteria 91283
155 Ga0495602_0000166 3300048088 Bacteria 61220
156 Ga0495602_0005378 3300048088 Bacteria 13433
157 Ga0495602_0038462 3300048088 Bacteria 4423
158 Ga0496100_0000014 3300048903 Bacteria 174991
159 Ga0496101_0000036 3300048904 Bacteria 175595
160 Ga0496102_0459321 3300048905 Unclassified 1194
161 Ga0496103_0153893 3300048906 Unclassified 1473
162 Ga0496104_0000024 3300048907 Bacteria 229913
163 Ga0496104_0044152 3300048907 Bacteria 4188
164 Ga0496105_0000013 3300048908 Bacteria 229894
165 Ga0496106_0000043 3300048909 Bacteria 105477
166 Ga0496106_0000440 3300048909 Bacteria 29633
167 Ga0496107_0000022 3300048910 Bacteria 128991
168 Ga0496107_0079494 3300048910 Bacteria 2390
169 Ga0496108_0000006 3300048911 Bacteria 469473
170 Ga0496108_0107328 3300048911 Bacteria 2384
171 Ga0496109_0000004 3300048912 Bacteria 404818
172 Ga0496109_0001597 3300048912 Bacteria 18906
173 Ga0496110_0000011 3300048913 Bacteria 97293
174 Ga0496110_0057974 3300048913 Bacteria 3411
175 Ga0496110_0394545 3300048913 Bacteria 1261
176 Ga0496110_1421664 3300048913 Unclassified 603
177 Ga0496111_0000170 3300048914 Bacteria 29627
178 Ga0496112_0020305 3300048915 Bacteria 6294
179 Ga0496112_0759348 3300048915 Unclassified 896
180 Ga0496113_0000202 3300048916 Bacteria 27530
181 Ga0496113_0577032 3300048916 Unclassified 901
182 Ga0496114_0004552 3300048917 Bacteria 10766
183 Ga0496116_0000519 3300048919 Bacteria 51925
184 Ga0496117_0402105 3300048920 Bacteria 691
185 Ga0496118_0078581 3300048921 Bacteria 2334
186 Ga0496119_0002641 3300048922 Bacteria 19419
187 Ga0496120_0003219 3300048923 Bacteria 15156
188 Ga0496121_0081636 3300048924 Bacteria 2558
189 Ga0496125_0187273 3300048928 Bacteria 1371
190 Ga0501042_0010425 3300049578 Bacteria 6233
191 Ga0501071_0245380 3300049587 Bacteria 1351
192 Ga0501075_0061257 3300049591 Bacteria 2835
193 Ga0501083_0230695 3300049744 Bacteria 1205
194 Ga0501044_0299172 3300049823 Unclassified 1538
195 Ga0501045_0542882 3300049824 Bacteria 862
196 nmdc:mga0qj67_264164_c1 3300050509 Bacteria 1396
197 nmdc:mga0rr50_18549_c1 3300050513 Bacteria 4676
198 Ga0495601_0000034 3300053077 Bacteria 93719
199 Ga0495601_0000104 3300053077 Bacteria 46045
200 Ga0495601_0004052 3300053077 Bacteria 8446
201 Ga0495612_0003818 3300053078 Bacteria 6261
202 Ga0495612_0044719 3300053078 Unclassified 1812
203 Ga0495655_0001421 3300053083 Bacteria 3668
204 Ga0495595_0000002 3300053084 Bacteria 445641
205 Ga0495595_0002896 3300053084 Bacteria 6763
206 Ga0495619_0000037 3300053085 Bacteria 124007
207 Ga0495619_0000541 3300053085 Bacteria 24974
208 Ga0495619_0001172 3300053085 Bacteria 17234
209 Ga0500614_000259 3300053123 Bacteria 13708

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005459 Ga0068867_100000295 Ga0068867_10000029512 185
2 3300006163 Ga0070715_10000014 Ga0070715_10000014114 185
3 3300025905 Ga0207685_10000025 Ga0207685_1000002552 185
4 3300026089 Ga0207648_10002595 Ga0207648_1000259512 185
5 3300046535 Ga0495586_0445580 Ga0495586_0445580_149_715 185
6 3300046683 Ga0495658_0000306 Ga0495658_0000306_10146_10712 185
7 3300053085 Ga0495619_0001172 Ga0495619_0001172_16453_17019 185
8 3300005458 Ga0070681_10106230 Ga0070681_101062302 187
9 3300005530 Ga0070679_100000225 Ga0070679_10000022523 187
10 3300005563 Ga0068855_100391652 Ga0068855_1003916523 187
11 3300009098 Ga0105245_10001002 Ga0105245_100010024 187
12 3300017792 Ga0163161_10403729 Ga0163161_104037292 187
13 3300025921 Ga0207652_10000309 Ga0207652_1000030930 187
14 3300025927 Ga0207687_10000079 Ga0207687_1000007967 187
15 3300025933 Ga0207706_10000017 Ga0207706_10000017120 187
16 3300026041 Ga0207639_10053131 Ga0207639_100531312 187
17 3300035117 Ga0373953_0040734 Ga0373953_0040734_1064_1630 187
18 3300036401 Ga0373937_0136716 Ga0373937_0136716_336_902 187
19 3300044694 Ga0466963_0000289 Ga0466963_0000289_8178_8744 187
20 3300044694 Ga0466963_0006005 Ga0466963_0006005_3775_4338 187
21 3300046461 Ga0495641_0000014 Ga0495641_0000014_117892_118458 187
22 3300046511 Ga0495608_0069207 Ga0495608_0069207_380_946 187
23 3300046684 Ga0495669_0000635 Ga0495669_0000635_6128_6697 187
24 3300048088 Ga0495602_0038462 Ga0495602_0038462_2737_3303 187
25 3300048903 Ga0496100_0000014 Ga0496100_0000014_64112_64681 187
26 3300048904 Ga0496101_0000036 Ga0496101_0000036_64716_65285 187
27 3300048907 Ga0496104_0000024 Ga0496104_0000024_63641_64210 187
28 3300048908 Ga0496105_0000013 Ga0496105_0000013_165704_166273 187
29 3300048909 Ga0496106_0000043 Ga0496106_0000043_44750_45319 187
30 3300048910 Ga0496107_0000022 Ga0496107_0000022_18112_18681 187
31 3300048917 Ga0496114_0004552 Ga0496114_0004552_4842_5408 187
32 3300049591 Ga0501075_0061257 Ga0501075_0061257_1888_2454 187
33 3300053123 Ga0500614_000259 Ga0500614_000259_1741_2307 187
34 3300005535 Ga0070684_100047427 Ga0070684_1000474271 188
35 3300048913 Ga0496110_1421664 Ga0496110_1421664_15_584 189
36 3300048905 Ga0496102_0459321 Ga0496102_0459321_83_658 191
37 3300048906 Ga0496103_0153893 Ga0496103_0153893_760_1335 191
38 3300049824 Ga0501045_0542882 Ga0501045_0542882_252_830 191
39 3300049587 Ga0501071_0245380 Ga0501071_0245380_51_635 194
40 3300046455 Ga0495603_0001286 Ga0495603_0001286_13918_14508 196
41 3300005365 Ga0070688_100001268 Ga0070688_1000012687 197
42 3300005466 Ga0070685_10001413 Ga0070685_100014137 197
43 3300013307 Ga0157372_10004870 Ga0157372_100048707 197
44 3300046455 Ga0495603_0020677 Ga0495603_0020677_2415_3011 197
45 3300046663 Ga0495635_0035063 Ga0495635_0035063_1879_2472 197
46 3300048919 Ga0496116_0000519 Ga0496116_0000519_26660_27253 197
47 3300048920 Ga0496117_0402105 Ga0496117_0402105_23_616 197
48 3300048921 Ga0496118_0078581 Ga0496118_0078581_1413_2006 197
49 3300048922 Ga0496119_0002641 Ga0496119_0002641_11882_12475 197
50 3300048923 Ga0496120_0003219 Ga0496120_0003219_9295_9888 197
51 3300048924 Ga0496121_0081636 Ga0496121_0081636_669_1262 197
52 3300049744 Ga0501083_0230695 Ga0501083_0230695_207_800 197
53 3300049823 Ga0501044_0299172 Ga0501044_0299172_219_812 197
54 3300005337 Ga0070682_100000171 Ga0070682_10000017141 198
55 3300005340 Ga0070689_100058585 Ga0070689_1000585852 198
56 3300005344 Ga0070661_100000035 Ga0070661_10000003557 198
57 3300005436 Ga0070713_100000010 Ga0070713_1000000107 198
58 3300005436 Ga0070713_100025217 Ga0070713_1000252174 198
59 3300005456 Ga0070678_100000345 Ga0070678_1000003457 198
60 3300005543 Ga0070672_100000006 Ga0070672_10000000672 198
61 3300005548 Ga0070665_100008395 Ga0070665_1000083955 198
62 3300005548 Ga0070665_100046548 Ga0070665_1000465485 198
63 3300005578 Ga0068854_100000237 Ga0068854_10000023722 198
64 3300005834 Ga0068851_10001578 Ga0068851_100015789 198
65 3300005834 Ga0068851_10009301 Ga0068851_100093013 198
66 3300006881 Ga0068865_100000140 Ga0068865_1000001404 198
67 3300009098 Ga0105245_10007310 Ga0105245_100073103 198
68 3300010375 Ga0105239_10050291 Ga0105239_100502912 198
69 3300013297 Ga0157378_10007104 Ga0157378_100071043 198
70 3300014326 Ga0157380_10000149 Ga0157380_1000014934 198
71 3300014969 Ga0157376_10011312 Ga0157376_100113124 198
72 3300020082 Ga0206353_11669443 Ga0206353_116694431 198
73 3300025321 Ga0207656_10002200 Ga0207656_100022007 198
74 3300025321 Ga0207656_10005231 Ga0207656_100052313 198
75 3300025920 Ga0207649_10000028 Ga0207649_10000028105 198
76 3300025926 Ga0207659_10000022 Ga0207659_10000022126 198
77 3300025927 Ga0207687_10000031 Ga0207687_10000031100 198
78 3300025927 Ga0207687_10004101 Ga0207687_100041018 198
79 3300025928 Ga0207700_10000007 Ga0207700_10000007208 198
80 3300025928 Ga0207700_10062273 Ga0207700_100622733 198
81 3300025938 Ga0207704_10000360 Ga0207704_1000036018 198
82 3300025940 Ga0207691_10000025 Ga0207691_1000002552 198
83 3300025944 Ga0207661_10002602 Ga0207661_100026027 198
84 3300025981 Ga0207640_10000248 Ga0207640_100002488 198
85 3300026067 Ga0207678_10396406 Ga0207678_103964062 198
86 3300026121 Ga0207683_10001994 Ga0207683_1000199415 198
87 3300028379 Ga0268266_10001339 Ga0268266_1000133926 198
88 3300028379 Ga0268266_10014906 Ga0268266_100149066 198
89 3300036647 Ga0316582_0340197 Ga0316582_0340197_259_855 198
90 3300044694 Ga0466963_0038123 Ga0466963_0038123_427_1023 198
91 3300044842 Ga0466957_0071365 Ga0466957_0071365_935_1531 198
92 3300046459 Ga0495629_0003726 Ga0495629_0003726_3619_4215 198
93 3300046461 Ga0495641_0055386 Ga0495641_0055386_578_1174 198
94 3300046476 Ga0495662_0001700 Ga0495662_0001700_3693_4295 198
95 3300046507 Ga0495606_0000108 Ga0495606_0000108_94806_95402 198
96 3300046511 Ga0495608_0000036 Ga0495608_0000036_71649_72245 198
97 3300046516 Ga0495628_0001454 Ga0495628_0001454_6649_7245 198
98 3300046516 Ga0495628_0271292 Ga0495628_0271292_14_610 198
99 3300046529 Ga0495652_0000023 Ga0495652_0000023_103643_104239 198
100 3300046539 Ga0495621_0003529 Ga0495621_0003529_3094_3693 198
101 3300046674 Ga0495588_0000149 Ga0495588_0000149_17583_18179 198
102 3300046675 Ga0495657_0000001 Ga0495657_0000001_71649_72245 198
103 3300046683 Ga0495658_0001601 Ga0495658_0001601_5912_6508 198
104 3300046689 Ga0495613_0000481 Ga0495613_0000481_9116_9712 198
105 3300046690 Ga0495624_0000038 Ga0495624_0000038_68037_68633 198
106 3300046809 Ga0495600_0037837 Ga0495600_0037837_2004_2600 198
107 3300046810 Ga0495660_0136749 Ga0495660_0136749_547_1143 198
108 3300047317 Ga0495604_0000122 Ga0495604_0000122_57911_58507 198
109 3300047321 Ga0495676_0192863 Ga0495676_0192863_723_1319 198
110 3300047444 Ga0495675_0000037 Ga0495675_0000037_58463_59059 198
111 3300048088 Ga0495602_0000166 Ga0495602_0000166_57117_57713 198
112 3300048088 Ga0495602_0005378 Ga0495602_0005378_10033_10629 198
113 3300048907 Ga0496104_0044152 Ga0496104_0044152_1544_2140 198
114 3300048911 Ga0496108_0107328 Ga0496108_0107328_1514_2110 198
115 3300048912 Ga0496109_0001597 Ga0496109_0001597_303_899 198
116 3300048913 Ga0496110_0000011 Ga0496110_0000011_60762_61358 198
117 3300048913 Ga0496110_0057974 Ga0496110_0057974_1376_1972 198
118 3300048914 Ga0496111_0000170 Ga0496111_0000170_24097_24693 198
119 3300048915 Ga0496112_0020305 Ga0496112_0020305_2179_2775 198
120 3300048915 Ga0496112_0759348 Ga0496112_0759348_277_873 198
121 3300048916 Ga0496113_0000202 Ga0496113_0000202_23240_23836 198
122 3300048916 Ga0496113_0577032 Ga0496113_0577032_160_756 198
123 3300050509 nmdc:mga0qj67_264164_c1 nmdc:mga0qj67_264164_c1_705_1301 198
124 3300053077 Ga0495601_0000034 Ga0495601_0000034_26433_27029 198
125 3300053077 Ga0495601_0004052 Ga0495601_0004052_3527_4123 198
126 3300053078 Ga0495612_0044719 Ga0495612_0044719_1028_1624 198
127 3300053083 Ga0495655_0001421 Ga0495655_0001421_150_746 198
128 3300053084 Ga0495595_0000002 Ga0495595_0000002_373397_373993 198
129 3300053084 Ga0495595_0002896 Ga0495595_0002896_3000_3596 198
130 3300053085 Ga0495619_0000037 Ga0495619_0000037_21466_22062 198
131 3300053085 Ga0495619_0000541 Ga0495619_0000541_3612_4208 198
132 3300028381 Ga0268264_10277371 Ga0268264_102773711 204
133 3300046536 Ga0495587_0064213 Ga0495587_0064213_636_1298 204
134 3300005618 Ga0068864_100000015 Ga0068864_100000015245 205
135 3300005718 Ga0068866_10001671 Ga0068866_100016717 205
136 3300007076 Ga0075435_100058432 Ga0075435_1000584323 205
137 3300009148 Ga0105243_10131958 Ga0105243_101319582 205
138 3300025899 Ga0207642_10000872 Ga0207642_100008727 205
139 3300025934 Ga0207686_10006267 Ga0207686_100062674 205
140 3300025935 Ga0207709_10020598 Ga0207709_100205982 205
141 3300025937 Ga0207669_10000017 Ga0207669_1000001760 205
142 3300026095 Ga0207676_10000018 Ga0207676_1000001855 205
143 3300041512 Ga0451853_1302818 Ga0451853_1302818_119_751 205
144 3300050513 nmdc:mga0rr50_18549_c1 nmdc:mga0rr50_18549_c1_1734_2393 205
145 3300002459 JGI24751J29686_10018548 JGI24751J29686_100185483 206
146 3300005329 Ga0070683_100042601 Ga0070683_1000426013 206
147 3300005337 Ga0070682_100000030 Ga0070682_100000030117 206
148 3300005338 Ga0068868_100000225 Ga0068868_10000022523 206
149 3300005366 Ga0070659_100005337 Ga0070659_1000053374 206
150 3300005439 Ga0070711_100087047 Ga0070711_1000870472 206
151 3300005457 Ga0070662_100000006 Ga0070662_100000006120 206
152 3300005466 Ga0070685_10603269 Ga0070685_106032691 206
153 3300005535 Ga0070684_100014810 Ga0070684_1000148106 206
154 3300005548 Ga0070665_100000040 Ga0070665_10000004060 206
155 3300005578 Ga0068854_100053855 Ga0068854_1000538552 206
156 3300005614 Ga0068856_100029013 Ga0068856_1000290133 206
157 3300005614 Ga0068856_100342569 Ga0068856_1003425692 206
158 3300005616 Ga0068852_100147622 Ga0068852_1001476222 206
159 3300005718 Ga0068866_10084888 Ga0068866_100848883 206
160 3300005842 Ga0068858_100000319 Ga0068858_10000031918 206
161 3300006175 Ga0070712_100000353 Ga0070712_10000035311 206
162 3300009093 Ga0105240_11260232 Ga0105240_112602321 206
163 3300009098 Ga0105245_10000212 Ga0105245_100002129 206
164 3300009551 Ga0105238_10000048 Ga0105238_1000004889 206
165 3300009553 Ga0105249_10000070 Ga0105249_1000007062 206
166 3300009553 Ga0105249_10046590 Ga0105249_100465903 206
167 3300014326 Ga0157380_10000261 Ga0157380_1000026114 206
168 3300014968 Ga0157379_10007056 Ga0157379_100070568 206
169 3300025893 Ga0207682_10000180 Ga0207682_100001807 206
170 3300025899 Ga0207642_10228825 Ga0207642_102288252 206
171 3300025913 Ga0207695_10594762 Ga0207695_105947622 206
172 3300025915 Ga0207693_10006121 Ga0207693_100061218 206
173 3300025916 Ga0207663_10188613 Ga0207663_101886132 206
174 3300025919 Ga0207657_10137856 Ga0207657_101378562 206
175 3300025924 Ga0207694_10000056 Ga0207694_1000005689 206
176 3300025927 Ga0207687_10000020 Ga0207687_1000002060 206
177 3300025932 Ga0207690_10003023 Ga0207690_100030232 206
178 3300025932 Ga0207690_10019048 Ga0207690_100190483 206
179 3300025936 Ga0207670_10063341 Ga0207670_100633412 206
180 3300025944 Ga0207661_10001241 Ga0207661_100012412 206
181 3300025944 Ga0207661_10013737 Ga0207661_100137375 206
182 3300025961 Ga0207712_10000019 Ga0207712_10000019249 206
183 3300025961 Ga0207712_10044699 Ga0207712_100446992 206
184 3300025981 Ga0207640_10017114 Ga0207640_100171143 206
185 3300026023 Ga0207677_10000508 Ga0207677_1000050819 206
186 3300026035 Ga0207703_10000166 Ga0207703_1000016618 206
187 3300026078 Ga0207702_10020977 Ga0207702_100209775 206
188 3300026142 Ga0207698_10065265 Ga0207698_100652653 206
189 3300028379 Ga0268266_10000045 Ga0268266_1000004563 206
190 3300028379 Ga0268266_10016916 Ga0268266_100169166 206
191 3300041512 Ga0451853_3490516 Ga0451853_3490516_8573_9235 206
192 3300045976 Ga0466967_0000017 Ga0466967_0000017_39871_40569 206
193 3300046515 Ga0495620_0000797 Ga0495620_0000797_6041_6700 206
194 3300046516 Ga0495628_0015704 Ga0495628_0015704_4869_5531 206
195 3300046543 Ga0495645_0099392 Ga0495645_0099392_1117_1779 206
196 3300046678 Ga0495599_0007290 Ga0495599_0007290_3731_4393 206
197 3300046691 Ga0495670_0012288 Ga0495670_0012288_2138_2800 206
198 3300046694 Ga0495649_0001181 Ga0495649_0001181_13410_14072 206
199 3300047321 Ga0495676_0002391 Ga0495676_0002391_6979_7641 206
200 3300047322 Ga0495680_0005747 Ga0495680_0005747_2852_3517 206
201 3300048909 Ga0496106_0000440 Ga0496106_0000440_212_874 206
202 3300048910 Ga0496107_0079494 Ga0496107_0079494_1535_2197 206
203 3300048911 Ga0496108_0000006 Ga0496108_0000006_169571_170233 206
204 3300048912 Ga0496109_0000004 Ga0496109_0000004_342314_342976 206
205 3300048913 Ga0496110_0394545 Ga0496110_0394545_525_1187 206
206 3300048928 Ga0496125_0187273 Ga0496125_0187273_674_1336 206
207 3300049578 Ga0501042_0010425 Ga0501042_0010425_1315_1938 206
208 3300053077 Ga0495601_0000104 Ga0495601_0000104_8145_8807 206
209 3300053078 Ga0495612_0003818 Ga0495612_0003818_2063_2725 206

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

137

193

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

137

181

0.96

PF00072

Response_reg

Response regulator receiver domain

1

117

0.91

PF04545

Sigma70_r4

Sigma-70, region 4

137

182

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
7r3g-assembly1.cif.gz_B pross optimitzed variant of rhlr (75 mutations) in complex with the synthetic antagonist mbtl 0.9738 146 200
6jqs-assembly1.cif.gz_A structure of transcription factor, gere 0.9729 146 206
7r3e-assembly1.cif.gz_A fusion construct of pqse and rhlr in complex with the synthetic antagonist mbtl 0.9719 146 205
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9697 145 206
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9649 146 200
ID Description Score Start End Superfamily
4hyeA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.987 146 201 1.10.10.10
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9834 146 204 1.10.10.10
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9756 146 203 1.10.10.10
6jqsA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9729 146 206 1.10.10.10
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9706 146 203 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4Q3VXU1-F1-model_v4 Response regulator transcription factor 0.9095 2 136 GO:0000160
AF-A0A522E8F7-F1-model_v4 Response regulator transcription factor 0.9094 2 136 GO:0000160
AF-A0A6F7WD92-F1-model_v4 deleted 0.9094 4 136
AF-A0A522Q479-F1-model_v4 Response regulator transcription factor 0.9065 4 136 GO:0000160
GO:0003677
AF-A0A7Y5L8Q6-F1-model_v4 Response regulator transcription factor 0.9036 4 138 GO:0000160
GO:0003677

Feature Viewer

pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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