F318923

General Info

Members Datasets Scaffolds Average Seq Length
209 119 418 615

Family's Representative Sequence

Representative Sequence 3300006028|Ga0070717_10007793|Ga0070717_100077933
Length 647
Sequence MARFRSFLSRRKFFVVVCQARMDAELEKLVESGKLTSRAAELLDKLRPGAFCLHKSWGFGRVAEWNLLLNQIVIDFTGKKGHSMQLQYAAEHLAAIPPEHFLARKATNLMSIKQLAKQDPAALVRNVLESSGGKATVQEISEWLVDDILTETEWKRWWESTKKALKASGYFSVPAKKNEPVQLRTEAVSKADELIASFNQANKPREKAEVLDQIVRLHAEFKEPGRQLQPIVTAVETAAMRNQKLHPEISFDLIISRDELLERVPQLRSTIVGFTLAKLIVDEEARLASILPKLPAAKEKKTLQTLPAALGERWTERALRLMRESHGRLVAQIPRVLSEAGQHAQLRTMLERSIRQHSATSEMLVWLGNERAEWRELISSELLAAILSAVEREQHQAPGRAGKLQRLLAEDRHLLGEMFANEDVSVARDAMRRLQLSPLFDELTKRSLLARIVKIHPELESMITGAQSAEQAAPLIVSWSSLRRREAEYEELVKRKIPENSKEIALARSYGDLSENFEFKAAKQMQAVLMRRKAELEQMLHRARGTSFENPDTSRVSIGTVVTLRDVDSKKEETYTILGAWDGDPDRHIISYQTAIGQAVLGRKPGENVNLNDHSGVARFEIISIDPAPADTAETATETQPLPLVAE

Samples

Sample ID Description Type Environment
1 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
2 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
3 3300002126 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
19 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
20 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
21 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
24 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
25 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
26 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
30 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
31 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
32 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
33 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
34 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
35 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
36 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
37 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
38 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
39 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
43 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
44 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
45 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
46 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
47 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
49 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
50 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
56 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
57 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
58 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
62 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
63 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
64 3300025271 Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
92 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
93 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
94 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
95 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
96 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
100 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
101 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
102 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
103 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
104 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
105 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
106 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
107 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
108 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
109 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
110 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
111 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
112 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
115 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
116 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
117 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
118 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
119 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 9.09
Rhizosphere 90.91
Stem 0
Stem Tuber 0
Unclassified 15.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070717_10007793 3300006028 Bacteria 7969
2 CNXas_1000115 3300000545 Bacteria 14787
3 JGI24035J26624_1000669 3300002126 Bacteria 3174
4 Ga0065712_10003912 3300005290 Bacteria 6175
5 Ga0065712_10092750 3300005290 Bacteria 2319
6 Ga0065715_10006081 3300005293 Bacteria 5111
7 Ga0065715_10008259 3300005293 Bacteria 3700
8 Ga0065715_10095177 3300005293 Unclassified 4144
9 Ga0065715_10124283 3300005293 Bacteria 2158
10 Ga0070676_10024776 3300005328 Bacteria 3384
11 Ga0070676_10050249 3300005328 Bacteria 2444
12 Ga0070683_100022211 3300005329 Bacteria 5668
13 Ga0070683_100035110 3300005329 Bacteria 4583
14 Ga0070670_100001118 3300005331 Bacteria 21339
15 Ga0070670_100006805 3300005331 Bacteria 9679
16 Ga0070670_100112103 3300005331 Bacteria 2351
17 Ga0068869_100021599 3300005334 Bacteria 4430
18 Ga0070666_10018558 3300005335 Unclassified 4475
19 Ga0068868_100021117 3300005338 Unclassified 4903
20 Ga0068868_100052085 3300005338 Bacteria 3223
21 Ga0070689_100011558 3300005340 Bacteria 6325
22 Ga0070689_100052783 3300005340 Unclassified 3145
23 Ga0070687_100002243 3300005343 Bacteria 7168
24 Ga0070661_100013372 3300005344 Bacteria 5760
25 Ga0070668_100003645 3300005347 Bacteria 11364
26 Ga0070668_100040404 3300005347 Bacteria 3569
27 Ga0070669_100012742 3300005353 Bacteria 5968
28 Ga0070669_100014144 3300005353 Bacteria 5678
29 Ga0070669_100019122 3300005353 Bacteria 4896
30 Ga0070669_100021960 3300005353 Bacteria 4563
31 Ga0070675_100004378 3300005354 Bacteria 10773
32 Ga0070675_100028115 3300005354 Bacteria 4524
33 Ga0070675_100041464 3300005354 Bacteria 3760
34 Ga0070675_100053510 3300005354 Bacteria 3320
35 Ga0070671_100011696 3300005355 Bacteria 7058
36 Ga0070671_100022863 3300005355 Bacteria 5109
37 Ga0070674_100005681 3300005356 Bacteria 7232
38 Ga0070673_100000719 3300005364 Bacteria 18292
39 Ga0070673_100033310 3300005364 Bacteria 3889
40 Ga0070688_100003068 3300005365 Bacteria 8530
41 Ga0070688_100037239 3300005365 Bacteria 2963
42 Ga0070688_100050975 3300005365 Bacteria 2581
43 Ga0070667_100006540 3300005367 Bacteria 9687
44 Ga0070667_100119754 3300005367 Bacteria 2289
45 Ga0070713_100040701 3300005436 Bacteria 3780
46 Ga0070713_100042805 3300005436 Bacteria 3699
47 Ga0070713_100090658 3300005436 Bacteria 2628
48 Ga0070711_100006496 3300005439 Bacteria 7051
49 Ga0070711_100076971 3300005439 Bacteria 2366
50 Ga0070708_100040679 3300005445 Unclassified 4072
51 Ga0070708_100106122 3300005445 Bacteria 2578
52 Ga0070708_100168364 3300005445 Bacteria 2044
53 Ga0070678_100003140 3300005456 Bacteria 9152
54 Ga0070662_100020770 3300005457 Bacteria 4477
55 Ga0070681_10105616 3300005458 Unclassified 2758
56 Ga0068867_100007875 3300005459 Bacteria 7531
57 Ga0070706_100001003 3300005467 Bacteria 30671
58 Ga0070706_100005715 3300005467 Bacteria 11828
59 Ga0070706_100007867 3300005467 Bacteria 9962
60 Ga0070706_100022645 3300005467 Bacteria 5785
61 Ga0070706_100034016 3300005467 Unclassified 4705
62 Ga0070707_100030626 3300005468 Bacteria 5124
63 Ga0070707_100085846 3300005468 Bacteria 3043
64 Ga0070707_100098149 3300005468 Bacteria 2837
65 Ga0070707_100098326 3300005468 Bacteria 2834
66 Ga0070707_100138860 3300005468 Unclassified 2365
67 Ga0070698_100002638 3300005471 Bacteria 19754
68 Ga0070698_100002676 3300005471 Bacteria 19643
69 Ga0070698_100050285 3300005471 Unclassified 4251
70 Ga0070699_100007182 3300005518 Bacteria 9685
71 Ga0070699_100044584 3300005518 Unclassified 3839
72 Ga0070699_100146626 3300005518 Unclassified 2085
73 Ga0070679_100042175 3300005530 Bacteria 4543
74 Ga0070684_100014768 3300005535 Bacteria 6338
75 Ga0070697_100034886 3300005536 Bacteria 4057
76 Ga0070697_100036306 3300005536 Unclassified 3980
77 Ga0070665_100016333 3300005548 Bacteria 7443
78 Ga0070665_100037706 3300005548 Unclassified 4859
79 Ga0070704_100009970 3300005549 Bacteria 5768
80 Ga0068856_100096716 3300005614 Unclassified 2941
81 Ga0068858_100030626 3300005842 Bacteria 4996
82 Ga0068858_100035589 3300005842 Bacteria 4618
83 Ga0068860_100010838 3300005843 Bacteria 8997
84 Ga0068862_100049779 3300005844 Bacteria 3579
85 Ga0081455_10000398 3300005937 Bacteria 57265
86 Ga0081455_10001384 3300005937 Bacteria 29929
87 Ga0081455_10002878 3300005937 Bacteria 20255
88 Ga0081455_10021441 3300005937 Bacteria 6060
89 Ga0081455_10051273 3300005937 Bacteria 3540
90 Ga0081455_10051638 3300005937 Bacteria 3525
91 Ga0081540_1000010 3300005983 Bacteria 193206
92 Ga0081539_10001223 3300005985 Bacteria 45890
93 Ga0081539_10014922 3300005985 Bacteria 5701
94 Ga0070712_100072169 3300006175 Bacteria 2472
95 Ga0097621_100005796 3300006237 Bacteria 8724
96 Ga0068871_100074148 3300006358 Unclassified 2807
97 Ga0075428_100131184 3300006844 Bacteria 2726
98 Ga0068865_100029882 3300006881 Bacteria 3620
99 Ga0105245_10117714 3300009098 Bacteria 2478
100 Ga0105245_10168282 3300009098 Bacteria 2085
101 Ga0114129_10008807 3300009147 Bacteria 14399
102 Ga0105242_10028121 3300009176 Bacteria 4472
103 Ga0105249_10045640 3300009553 Bacteria 3986
104 Ga0099796_10009024 3300010159 Bacteria 2681
105 Ga0105239_10088912 3300010375 Bacteria 3406
106 Ga0157374_10005505 3300013296 Bacteria 10638
107 Ga0157378_10015080 3300013297 Bacteria 6764
108 Ga0157378_10051984 3300013297 Unclassified 3645
109 Ga0163162_10013201 3300013306 Bacteria 8067
110 Ga0163162_10160285 3300013306 Unclassified 2371
111 Ga0157372_10005030 3300013307 Bacteria 14046
112 Ga0157372_10021607 3300013307 Bacteria 6955
113 Ga0157375_10002334 3300013308 Bacteria 16399
114 Ga0157375_10010173 3300013308 Bacteria 8279
115 Ga0182008_10017249 3300014497 Unclassified 3747
116 Ga0157376_10023940 3300014969 Bacteria 4789
117 Ga0157376_10058372 3300014969 Bacteria 3232
118 Ga0207666_1000782 3300025271 Bacteria 3816
119 Ga0207697_10000479 3300025315 Bacteria 22589
120 Ga0207697_10001067 3300025315 Bacteria 15151
121 Ga0207697_10002725 3300025315 Bacteria 9014
122 Ga0207697_10003825 3300025315 Bacteria 7348
123 Ga0207697_10004033 3300025315 Bacteria 7116
124 Ga0207688_10006206 3300025901 Bacteria 6501
125 Ga0207688_10015779 3300025901 Bacteria 4097
126 Ga0207688_10028058 3300025901 Bacteria 3097
127 Ga0207647_10045503 3300025904 Bacteria 2738
128 Ga0207645_10001870 3300025907 Bacteria 16994
129 Ga0207645_10004125 3300025907 Bacteria 10805
130 Ga0207705_10067944 3300025909 Bacteria 2580
131 Ga0207684_10001037 3300025910 Bacteria 31112
132 Ga0207684_10002366 3300025910 Bacteria 19090
133 Ga0207684_10015898 3300025910 Bacteria 6467
134 Ga0207684_10032126 3300025910 Unclassified 4464
135 Ga0207684_10035944 3300025910 Bacteria 4205
136 Ga0207684_10041707 3300025910 Bacteria 3890
137 Ga0207693_10021948 3300025915 Bacteria 5075
138 Ga0207693_10022990 3300025915 Bacteria 4950
139 Ga0207693_10023296 3300025915 Unclassified 4917
140 Ga0207662_10004025 3300025918 Bacteria 7667
141 Ga0207646_10012018 3300025922 Bacteria 8345
142 Ga0207646_10071221 3300025922 Unclassified 3105
143 Ga0207646_10088821 3300025922 Bacteria 2766
144 Ga0207681_10052786 3300025923 Bacteria 2757
145 Ga0207650_10006820 3300025925 Bacteria 7789
146 Ga0207659_10002072 3300025926 Bacteria 11888
147 Ga0207700_10035617 3300025928 Bacteria 3586
148 Ga0207664_10049186 3300025929 Unclassified 3318
149 Ga0207644_10004999 3300025931 Bacteria 8654
150 Ga0207644_10010576 3300025931 Bacteria 6083
151 Ga0207644_10087124 3300025931 Unclassified 2320
152 Ga0207706_10000611 3300025933 Bacteria 37952
153 Ga0207706_10031663 3300025933 Bacteria 4711
154 Ga0207670_10053490 3300025936 Bacteria 2720
155 Ga0207691_10000267 3300025940 Bacteria 51666
156 Ga0207691_10023018 3300025940 Bacteria 5868
157 Ga0207661_10051525 3300025944 Unclassified 3284
158 Ga0207658_10004290 3300025986 Bacteria 9933
159 Ga0207677_10024577 3300026023 Unclassified 3745
160 Ga0207677_10048616 3300026023 Bacteria 2857
161 Ga0207702_10082159 3300026078 Unclassified 2801
162 Ga0207648_10017853 3300026089 Bacteria 6439
163 Ga0207683_10002489 3300026121 Bacteria 16067
164 Ga0207683_10016075 3300026121 Bacteria 6368
165 Ga0207683_10068516 3300026121 Bacteria 3133
166 Ga0207683_10097997 3300026121 Bacteria 2615
167 Ga0268266_10013267 3300028379 Bacteria 7101
168 Ga0268264_10038916 3300028381 Bacteria 3927
169 Ga0373955_0041855 3300035172 Bacteria 2458
170 Ga0373935_0024867 3300035692 Unclassified 3688
171 Ga0373937_0024668 3300036401 Bacteria 5426
172 Ga0395899_0018609 3300037312 Bacteria 5280
173 Ga0395900_0024634 3300037418 Bacteria 6158
174 Ga0395898_0003731 3300037466 Bacteria 16901
175 Ga0395901_0010923 3300038443 Bacteria 9202
176 Ga0451576_0032639 3300045051 Bacteria 5540
177 Ga0451576_0110258 3300045051 Bacteria 2864
178 Ga0495592_0015199 3300046454 Bacteria 5846
179 Ga0495628_0092720 3300046516 Bacteria 2336
180 Ga0495645_0005554 3300046543 Bacteria 8670
181 Ga0495645_0041686 3300046543 Bacteria 3347
182 Ga0495599_0010342 3300046678 Bacteria 5705
183 Ga0495646_0056190 3300046680 Bacteria 2361
184 Ga0495658_0010034 3300046683 Bacteria 4729
185 Ga0495684_0016605 3300047471 Bacteria 5671
186 Ga0495684_0026031 3300047471 Bacteria 4496
187 Ga0495602_0038295 3300048088 Bacteria 4436
188 Ga0496100_0014955 3300048903 Bacteria 4522
189 Ga0496101_0044738 3300048904 Bacteria 3169
190 Ga0496104_0052885 3300048907 Bacteria 3836
191 Ga0496104_0054170 3300048907 Bacteria 3792
192 Ga0496104_0070851 3300048907 Bacteria 3315
193 Ga0496104_0105002 3300048907 Bacteria 2707
194 Ga0496105_0048002 3300048908 Bacteria 3524
195 Ga0496106_0041533 3300048909 Bacteria 3446
196 Ga0496109_0001244 3300048912 Bacteria 21112
197 Ga0496112_0010075 3300048915 Bacteria 8559
198 Ga0496112_0134016 3300048915 Bacteria 2448
199 Ga0496112_0135985 3300048915 Unclassified 2428
200 Ga0496113_0001826 3300048916 Bacteria 12112
201 Ga0496113_0087942 3300048916 Unclassified 2390
202 Ga0496114_0030726 3300048917 Bacteria 4420
203 Ga0496114_0034997 3300048917 Bacteria 4147
204 Ga0496115_0027663 3300048918 Unclassified 4437
205 Ga0496115_0043521 3300048918 Bacteria 3581
206 Ga0496115_0141803 3300048918 Unclassified 1983
207 nmdc:mga0a205_56152_c1 3300050515 Unclassified 3802
208 Ga0495601_0003878 3300053077 Bacteria 8611
209 Ga0495619_0012297 3300053085 Bacteria 5387
210 Ga0070717_10007793
211 CNXas_1000115
212 JGI24035J26624_1000669
213 Ga0065712_10003912
214 Ga0065712_10092750
215 Ga0065715_10006081
216 Ga0065715_10008259
217 Ga0065715_10095177
218 Ga0065715_10124283
219 Ga0070676_10024776
220 Ga0070676_10050249
221 Ga0070683_100022211
222 Ga0070683_100035110
223 Ga0070670_100001118
224 Ga0070670_100006805
225 Ga0070670_100112103
226 Ga0068869_100021599
227 Ga0070666_10018558
228 Ga0068868_100021117
229 Ga0068868_100052085
230 Ga0070689_100011558
231 Ga0070689_100052783
232 Ga0070687_100002243
233 Ga0070661_100013372
234 Ga0070668_100003645
235 Ga0070668_100040404
236 Ga0070669_100012742
237 Ga0070669_100014144
238 Ga0070669_100019122
239 Ga0070669_100021960
240 Ga0070675_100004378
241 Ga0070675_100028115
242 Ga0070675_100041464
243 Ga0070675_100053510
244 Ga0070671_100011696
245 Ga0070671_100022863
246 Ga0070674_100005681
247 Ga0070673_100000719
248 Ga0070673_100033310
249 Ga0070688_100003068
250 Ga0070688_100037239
251 Ga0070688_100050975
252 Ga0070667_100006540
253 Ga0070667_100119754
254 Ga0070713_100040701
255 Ga0070713_100042805
256 Ga0070713_100090658
257 Ga0070711_100006496
258 Ga0070711_100076971
259 Ga0070708_100040679
260 Ga0070708_100106122
261 Ga0070708_100168364
262 Ga0070678_100003140
263 Ga0070662_100020770
264 Ga0070681_10105616
265 Ga0068867_100007875
266 Ga0070706_100001003
267 Ga0070706_100005715
268 Ga0070706_100007867
269 Ga0070706_100022645
270 Ga0070706_100034016
271 Ga0070707_100030626
272 Ga0070707_100085846
273 Ga0070707_100098149
274 Ga0070707_100098326
275 Ga0070707_100138860
276 Ga0070698_100002638
277 Ga0070698_100002676
278 Ga0070698_100050285
279 Ga0070699_100007182
280 Ga0070699_100044584
281 Ga0070699_100146626
282 Ga0070679_100042175
283 Ga0070684_100014768
284 Ga0070697_100034886
285 Ga0070697_100036306
286 Ga0070665_100016333
287 Ga0070665_100037706
288 Ga0070704_100009970
289 Ga0068856_100096716
290 Ga0068858_100030626
291 Ga0068858_100035589
292 Ga0068860_100010838
293 Ga0068862_100049779
294 Ga0081455_10000398
295 Ga0081455_10001384
296 Ga0081455_10002878
297 Ga0081455_10021441
298 Ga0081455_10051273
299 Ga0081455_10051638
300 Ga0081540_1000010
301 Ga0081539_10001223
302 Ga0081539_10014922
303 Ga0070712_100072169
304 Ga0097621_100005796
305 Ga0068871_100074148
306 Ga0075428_100131184
307 Ga0068865_100029882
308 Ga0105245_10117714
309 Ga0105245_10168282
310 Ga0114129_10008807
311 Ga0105242_10028121
312 Ga0105249_10045640
313 Ga0099796_10009024
314 Ga0105239_10088912
315 Ga0157374_10005505
316 Ga0157378_10015080
317 Ga0157378_10051984
318 Ga0163162_10013201
319 Ga0163162_10160285
320 Ga0157372_10005030
321 Ga0157372_10021607
322 Ga0157375_10002334
323 Ga0157375_10010173
324 Ga0182008_10017249
325 Ga0157376_10023940
326 Ga0157376_10058372
327 Ga0207666_1000782
328 Ga0207697_10000479
329 Ga0207697_10001067
330 Ga0207697_10002725
331 Ga0207697_10003825
332 Ga0207697_10004033
333 Ga0207688_10006206
334 Ga0207688_10015779
335 Ga0207688_10028058
336 Ga0207647_10045503
337 Ga0207645_10001870
338 Ga0207645_10004125
339 Ga0207705_10067944
340 Ga0207684_10001037
341 Ga0207684_10002366
342 Ga0207684_10015898
343 Ga0207684_10032126
344 Ga0207684_10035944
345 Ga0207684_10041707
346 Ga0207693_10021948
347 Ga0207693_10022990
348 Ga0207693_10023296
349 Ga0207662_10004025
350 Ga0207646_10012018
351 Ga0207646_10071221
352 Ga0207646_10088821
353 Ga0207681_10052786
354 Ga0207650_10006820
355 Ga0207659_10002072
356 Ga0207700_10035617
357 Ga0207664_10049186
358 Ga0207644_10004999
359 Ga0207644_10010576
360 Ga0207644_10087124
361 Ga0207706_10000611
362 Ga0207706_10031663
363 Ga0207670_10053490
364 Ga0207691_10000267
365 Ga0207691_10023018
366 Ga0207661_10051525
367 Ga0207658_10004290
368 Ga0207677_10024577
369 Ga0207677_10048616
370 Ga0207702_10082159
371 Ga0207648_10017853
372 Ga0207683_10002489
373 Ga0207683_10016075
374 Ga0207683_10068516
375 Ga0207683_10097997
376 Ga0268266_10013267
377 Ga0268264_10038916
378 Ga0373955_0041855
379 Ga0373935_0024867
380 Ga0373937_0024668
381 Ga0395899_0018609
382 Ga0395900_0024634
383 Ga0395898_0003731
384 Ga0395901_0010923
385 Ga0451576_0032639
386 Ga0451576_0110258
387 Ga0495592_0015199
388 Ga0495628_0092720
389 Ga0495645_0005554
390 Ga0495645_0041686
391 Ga0495599_0010342
392 Ga0495646_0056190
393 Ga0495658_0010034
394 Ga0495684_0016605
395 Ga0495684_0026031
396 Ga0495602_0038295
397 Ga0496100_0014955
398 Ga0496101_0044738
399 Ga0496104_0052885
400 Ga0496104_0054170
401 Ga0496104_0070851
402 Ga0496104_0105002
403 Ga0496105_0048002
404 Ga0496106_0041533
405 Ga0496109_0001244
406 Ga0496112_0010075
407 Ga0496112_0134016
408 Ga0496112_0135985
409 Ga0496113_0001826
410 Ga0496113_0087942
411 Ga0496114_0030726
412 Ga0496114_0034997
413 Ga0496115_0027663
414 Ga0496115_0043521
415 Ga0496115_0141803
416 nmdc:mga0a205_56152_c1
417 Ga0495601_0003878
418 Ga0495619_0012297

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01272

GreA_GreB

Transcription elongation factor, GreA/GreB, C-term

551

627

0.97

PF03449

GreA_GreB_N

Transcription elongation factor, N-terminal

475

544

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7egs-assembly1.cif.gz_B the crystal structure of lobe domain of e. coli rna polymerase complexed with the c-terminal domain of uvrd 0.811 26 75
6yi2-assembly1.cif.gz_A uvrd helicase rna polymerase interactions are governed by uvrds carboxy terminal tudor domain. 0.7902 26 75
5dma-assembly1.cif.gz_A crystal structure of c-terminal tudor domain in pcra/uvrd helicase 0.7786 26 75
7egs-assembly1.cif.gz_B the crystal structure of lobe domain of e. coli rna polymerase complexed with the c-terminal domain of uvrd 0.7315 26 75
5dma-assembly1.cif.gz_A crystal structure of c-terminal tudor domain in pcra/uvrd helicase 0.7273 26 75
ID Description Score Start End Superfamily
af_Q2FXW7_4_78_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9955 457 522 1.10.287.180
af_P0A6W5_1_75_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9842 457 524 1.10.287.180
af_P30128_1_76_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9744 457 524 1.10.287.180
1grjA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9724 462 524 1.10.287.180
af_P9WMT9_4_78_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9666 457 524 1.10.287.180
ID Description Score Start End GO Terms
AF-A0A2V6M1W2-F1-model_v4 Uncharacterized protein 0.9509 1 157
AF-A0A2V6M1W2-F1-model_v4 Uncharacterized protein 0.9451 1 157
AF-A0A2V6LCN4-F1-model_v4 Uncharacterized protein 0.9069 1 191
AF-A0A2V6LCN4-F1-model_v4 Uncharacterized protein 0.8979 1 191
AF-A0A3M2CVV7-F1-model_v4 Uncharacterized protein 0.8921 19 141

Map