F317956

General Info

Members Datasets Scaffolds Average Seq Length
208 124 416 464

Family's Representative Sequence

Representative Sequence 3300026118|Ga0207675_100040416|Ga0207675_1000404162
Length 508
Sequence MTAEPGLVARTALALTDWAERWIPDAFIFALLATFFVLAAAVTATPSTVPEVIDAWGRGFWELIPFTLQMSLIIITGHVLATSPPIGRVVRAIASWPRTPRGAVALVTFFTLAASWLNWGFSLVFGAVLAIEVARRVEDVDYRALASASVLGLGSIWAQGLSGSAALQMATPGALQPQIRDIVAAGGIIPDGMISFRHTIFLWQSIASVVIETIVVTSVMWLATPPARLARTARDLGIELAPGASGQVRSEKLEVRSSDDHQPPRTENHRTLNENREPEPGTPNGERRTRLPPGQRLEHSRIVTWLVVALGFTYLARYFSQAGDPLSALTLNILNFAFLMVGFLLHGTPARLMRAVQNATPAVWGVILQFPFYAGIAGIITGTHLSRQVADVFVRVSTPATFPPLVAIYSAVLGVFVPSGGSKWVIEAPYVMQAAHTLKVHLGWVVSAYDLGEALANLVQPFWMLPVLGLFRLSARDVMGYTMVVFLAMTPVVIILVTLFGLTLRYPL

Samples

Sample ID Description Type Environment
1 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
41 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
42 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
43 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
44 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
45 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
46 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
47 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
55 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
56 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
60 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
61 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
62 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
88 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
91 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
92 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
93 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
94 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
95 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
96 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
97 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
98 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
99 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
100 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
103 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
104 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
105 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
106 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
107 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
108 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
109 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
110 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
111 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
116 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
117 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
118 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
119 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
120 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
121 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
122 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
123 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
124 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.04
Metatranscriptomes 0
Isolates 0.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.48
Nodule 0
Rhizoplane 1.92
Rhizosphere 96.15
Stem 0
Stem Tuber 0
Unclassified 10.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207675_100040416 3300026118 Bacteria 4355
2 Ga0065712_10070118 3300005290 Bacteria 6310
3 Ga0065712_10075793 3300005290 Bacteria 3789
4 Ga0070670_100048042 3300005331 Bacteria 3673
5 Ga0070670_100074545 3300005331 Bacteria 2915
6 Ga0070666_10008312 3300005335 Bacteria 6436
7 Ga0070680_100119210 3300005336 Bacteria 2202
8 Ga0068868_100079742 3300005338 Bacteria 2623
9 Ga0070660_100157187 3300005339 Unclassified 1830
10 Ga0070669_100060388 3300005353 Bacteria 2785
11 Ga0070675_100000172 3300005354 Bacteria 40213
12 Ga0070675_100011040 3300005354 Bacteria 7069
13 Ga0070675_100021304 3300005354 Bacteria 5178
14 Ga0070675_100073177 3300005354 Bacteria 2845
15 Ga0070671_100008670 3300005355 Bacteria 8157
16 Ga0070671_100046581 3300005355 Unclassified 3606
17 Ga0070674_100005361 3300005356 Bacteria 7395
18 Ga0070674_100057267 3300005356 Bacteria 2705
19 Ga0070673_100074033 3300005364 Unclassified 2743
20 Ga0070688_100005891 3300005365 Bacteria 6490
21 Ga0070688_100035712 3300005365 Bacteria 3020
22 Ga0070667_100025944 3300005367 Bacteria 4874
23 Ga0070713_100166439 3300005436 Unclassified 1972
24 Ga0070701_10010342 3300005438 Bacteria 4121
25 Ga0070705_100034856 3300005440 Bacteria 2817
26 Ga0070700_100004514 3300005441 Bacteria 7278
27 Ga0070700_100007081 3300005441 Bacteria 6029
28 Ga0070700_100112572 3300005441 Bacteria 1812
29 Ga0070694_100003652 3300005444 Bacteria 9181
30 Ga0070694_100072380 3300005444 Bacteria 2378
31 Ga0070678_100003066 3300005456 Bacteria 9262
32 Ga0070707_100045427 3300005468 Bacteria 4205
33 Ga0070699_100032604 3300005518 Bacteria 4498
34 Ga0070699_100043365 3300005518 Bacteria 3894
35 Ga0070686_100006207 3300005544 Bacteria 6633
36 Ga0070695_100037269 3300005545 Bacteria 3064
37 Ga0070696_100002131 3300005546 Bacteria 13007
38 Ga0070665_100008344 3300005548 Bacteria 10479
39 Ga0070665_100010741 3300005548 Bacteria 9263
40 Ga0070665_100052482 3300005548 Unclassified 4089
41 Ga0070704_100012781 3300005549 Bacteria 5192
42 Ga0070704_100019374 3300005549 Bacteria 4371
43 Ga0068854_100144678 3300005578 Bacteria 1828
44 Ga0068854_100178053 3300005578 Bacteria 1659
45 Ga0070702_100001409 3300005615 Bacteria 9823
46 Ga0068859_100040530 3300005617 Bacteria 4675
47 Ga0068859_100109953 3300005617 Bacteria 2818
48 Ga0068864_100055489 3300005618 Bacteria 3421
49 Ga0068864_100070608 3300005618 Bacteria 3039
50 Ga0068861_100014015 3300005719 Bacteria 5621
51 Ga0068863_100004492 3300005841 Bacteria 13762
52 Ga0068863_100141371 3300005841 Bacteria 2300
53 Ga0068858_100193699 3300005842 Bacteria 1921
54 Ga0068860_100090871 3300005843 Unclassified 2909
55 Ga0068862_100004877 3300005844 Bacteria 11296
56 Ga0068862_100046439 3300005844 Bacteria 3705
57 Ga0068862_100186434 3300005844 Bacteria 1864
58 Ga0081539_10004750 3300005985 Bacteria 14674
59 Ga0081539_10007146 3300005985 Bacteria 10302
60 Ga0070712_100100582 3300006175 Unclassified 2136
61 Ga0097621_100030089 3300006237 Bacteria 4295
62 Ga0068871_100002978 3300006358 Bacteria 11614
63 Ga0075428_100056298 3300006844 Bacteria 4307
64 Ga0075428_100096115 3300006844 Bacteria 3229
65 Ga0075433_10036668 3300006852 Bacteria 4226
66 Ga0075433_10042560 3300006852 Bacteria 3941
67 Ga0075434_100002697 3300006871 Bacteria 15684
68 Ga0075434_100030099 3300006871 Bacteria 5344
69 Ga0075434_100139695 3300006871 Bacteria 2442
70 Ga0075429_100034416 3300006880 Bacteria 4402
71 Ga0068865_100058168 3300006881 Bacteria 2699
72 Ga0075436_100000268 3300006914 Bacteria 32662
73 Ga0075436_100002927 3300006914 Bacteria 11707
74 Ga0075436_100073365 3300006914 Unclassified 2369
75 Ga0075436_100137305 3300006914 Bacteria 1717
76 Ga0097620_100040530 3300006931 Bacteria 4675
77 Ga0097620_100109950 3300006931 Bacteria 2818
78 Ga0075435_100000081 3300007076 Bacteria 50282
79 Ga0075435_100001268 3300007076 Bacteria 16199
80 Ga0075435_100025987 3300007076 Unclassified 4564
81 Ga0075435_100053703 3300007076 Bacteria 3250
82 Ga0105240_10035815 3300009093 Bacteria 6392
83 Ga0111539_10001100 3300009094 Bacteria 35682
84 Ga0111539_10008101 3300009094 Bacteria 13388
85 Ga0111539_10009489 3300009094 Bacteria 12280
86 Ga0111539_10027539 3300009094 Bacteria 6942
87 Ga0111539_10080589 3300009094 Bacteria 3829
88 Ga0111539_10165394 3300009094 Bacteria 2587
89 Ga0114129_10001288 3300009147 Bacteria 33389
90 Ga0114129_10003032 3300009147 Bacteria 23551
91 Ga0114129_10018558 3300009147 Bacteria 9902
92 Ga0114129_10018575 3300009147 Bacteria 9899
93 Ga0114129_10030346 3300009147 Bacteria 7650
94 Ga0114129_10080455 3300009147 Bacteria 4528
95 Ga0114129_10102942 3300009147 Bacteria 3948
96 Ga0105242_10002346 3300009176 Bacteria 14938
97 Ga0105242_10011532 3300009176 Bacteria 6797
98 Ga0105248_10063942 3300009177 Bacteria 4131
99 Ga0105248_10069764 3300009177 Bacteria 3947
100 Ga0105246_10010000 3300011119 Bacteria 5852
101 Ga0157374_10188075 3300013296 Unclassified 2019
102 Ga0157378_10176119 3300013297 Bacteria 2009
103 Ga0163163_10076574 3300014325 Bacteria 3340
104 Ga0157380_10006749 3300014326 Bacteria 8113
105 Ga0157377_10023373 3300014745 Bacteria 3275
106 Ga0157379_10006336 3300014968 Bacteria 10190
107 Ga0157379_10016902 3300014968 Bacteria 6420
108 Ga0157379_10042079 3300014968 Unclassified 4077
109 Ga0157376_10022039 3300014969 Bacteria 4957
110 Ga0207697_10024121 3300025315 Unclassified 2491
111 Ga0207645_10012899 3300025907 Bacteria 5656
112 Ga0207707_10059909 3300025912 Bacteria 3312
113 Ga0207695_10058856 3300025913 Bacteria 3987
114 Ga0207657_10054382 3300025919 Bacteria 3462
115 Ga0207646_10039579 3300025922 Bacteria 4243
116 Ga0207646_10043706 3300025922 Bacteria 4023
117 Ga0207646_10092029 3300025922 Bacteria 2714
118 Ga0207681_10019004 3300025923 Bacteria 4337
119 Ga0207681_10039866 3300025923 Bacteria 3121
120 Ga0207681_10054387 3300025923 Unclassified 2722
121 Ga0207650_10106889 3300025925 Bacteria 2161
122 Ga0207659_10051641 3300025926 Bacteria 2925
123 Ga0207644_10078363 3300025931 Bacteria 2435
124 Ga0207706_10159664 3300025933 Unclassified 1982
125 Ga0207686_10015937 3300025934 Bacteria 4212
126 Ga0207686_10038613 3300025934 Bacteria 2891
127 Ga0207669_10032392 3300025937 Bacteria 2935
128 Ga0207704_10035691 3300025938 Bacteria 2852
129 Ga0207704_10068889 3300025938 Bacteria 2233
130 Ga0207665_10089716 3300025939 Bacteria 2129
131 Ga0207691_10010163 3300025940 Bacteria 9030
132 Ga0207711_10032632 3300025941 Bacteria 4402
133 Ga0207711_10104918 3300025941 Unclassified 2505
134 Ga0207711_10136375 3300025941 Unclassified 2205
135 Ga0207679_10092779 3300025945 Bacteria 2340
136 Ga0207658_10020576 3300025986 Bacteria 4569
137 Ga0207677_10139482 3300026023 Bacteria 1854
138 Ga0207703_10005455 3300026035 Bacteria 10227
139 Ga0207708_10023636 3300026075 Bacteria 4646
140 Ga0207708_10060743 3300026075 Unclassified 2885
141 Ga0207641_10153469 3300026088 Unclassified 2088
142 Ga0207648_10012387 3300026089 Bacteria 7983
143 Ga0207675_100003996 3300026118 Bacteria 14304
144 Ga0207683_10092180 3300026121 Bacteria 2700
145 Ga0207683_10147066 3300026121 Bacteria 2125
146 Ga0207428_10009920 3300027907 Bacteria 8529
147 Ga0207428_10020622 3300027907 Bacteria 5596
148 Ga0207428_10029358 3300027907 Bacteria 4559
149 Ga0207428_10124299 3300027907 Bacteria 1976
150 Ga0268266_10004816 3300028379 Bacteria 12820
151 Ga0268265_10067684 3300028380 Bacteria 2765
152 Ga0307407_10046938 3300031903 Bacteria 2448
153 Ga0307409_100001635 3300031995 Bacteria 11219
154 Ga0373959_0001661 3300034820 Bacteria 3539
155 Ga0373929_0000410 3300035085 Bacteria 8088
156 Ga0373949_0001362 3300035090 Bacteria 7029
157 Ga0373942_0000493 3300035207 Bacteria 11192
158 Ga0373931_0003536 3300035691 Bacteria 7044
159 Ga0373935_0046795 3300035692 Bacteria 2734
160 Ga0373937_0010839 3300036401 Bacteria 7979
161 Ga0373937_0055793 3300036401 Bacteria 3628
162 Ga0451853_2640764 3300041512 Bacteria 2654
163 Ga0439462_0017070 3300042015 Bacteria 1880
164 Ga0451576_0003788 3300045051 Bacteria 20391
165 Ga0451576_0199486 3300045051 Bacteria 2090
166 Ga0495629_0103331 3300046459 Unclassified 1988
167 Ga0495621_0002550 3300046539 Bacteria 4912
168 Ga0495645_0008755 3300046543 Bacteria 7068
169 Ga0495658_0057191 3300046683 Bacteria 2227
170 Ga0495674_0192199 3300047319 Bacteria 1696
171 Ga0495684_0123766 3300047471 Bacteria 1946
172 Ga0496105_0285031 3300048908 Bacteria 1331
173 Ga0496106_0081092 3300048909 Bacteria 2492
174 Ga0496108_0048613 3300048911 Bacteria 3546
175 Ga0496112_0035050 3300048915 Bacteria 4884
176 Ga0501036_0210995 3300049572 Unclassified 1632
177 Ga0501073_0004290 3300049589 Bacteria 10696
178 nmdc:mga05p37_19641_c1 3300050507 Bacteria 8173
179 nmdc:mga05p37_198956_c1 3300050507 Bacteria 2428
180 nmdc:mga05p37_223782_c1 3300050507 Bacteria 2270
181 nmdc:mga05p37_2733_c1 3300050507 Bacteria 20505
182 nmdc:mga05p37_33175_c1 3300050507 Bacteria 6322
183 nmdc:mga05p37_45488_c1 3300050507 Bacteria 5398
184 nmdc:mga05p37_83054_c1 3300050507 Bacteria 3947
185 nmdc:mga05p37_9449_c1 3300050507 Bacteria 11545
186 nmdc:mga09592_25736_c1 3300050508 Bacteria 4871
187 nmdc:mga08y16_17615_c1 3300050511 Bacteria 7524
188 nmdc:mga08y16_17642_c1 3300050511 Bacteria 7518
189 nmdc:mga08y16_53444_c1 3300050511 Bacteria 4224
190 nmdc:mga08y16_8968_c1 3300050511 Bacteria 10505
191 nmdc:mga0n895_146_c1 3300050512 Bacteria 43293
192 nmdc:mga0n895_193477_c1 3300050512 Bacteria 2065
193 nmdc:mga0n895_326439_c1 3300050512 Bacteria 1555
194 nmdc:mga0n895_35592_c1 3300050512 Bacteria 4802
195 nmdc:mga0n895_472669_c1 3300050512 Bacteria 1265
196 nmdc:mga0n895_56219_c1 3300050512 Bacteria 3876
197 nmdc:mga0rr50_33_c1 3300050513 Bacteria 95585
198 nmdc:mga0rr50_42212_c1 3300050513 Bacteria 3329
199 nmdc:mga0rr50_78219_c1 3300050513 Bacteria 2545
200 nmdc:mga08x19_128_c1 3300050514 Bacteria 67012
201 nmdc:mga08x19_19587_c1 3300050514 Unclassified 4155
202 nmdc:mga0a205_115617_c1 3300050515 Bacteria 2581
203 nmdc:mga0a205_13264_c1 3300050515 Bacteria 7663
204 nmdc:mga0a205_68630_c1 3300050515 Bacteria 3423
205 Ga0495619_0078981 3300053085 Bacteria 2213
206 Ga0500555_005611 3300053103 Bacteria 3560
207 2862515751 2862507626 Bacteria 9425308
208 2990089593 2990088156 Bacteria 6657676
209 Ga0207675_100040416
210 Ga0065712_10070118
211 Ga0065712_10075793
212 Ga0070670_100048042
213 Ga0070670_100074545
214 Ga0070666_10008312
215 Ga0070680_100119210
216 Ga0068868_100079742
217 Ga0070660_100157187
218 Ga0070669_100060388
219 Ga0070675_100000172
220 Ga0070675_100011040
221 Ga0070675_100021304
222 Ga0070675_100073177
223 Ga0070671_100008670
224 Ga0070671_100046581
225 Ga0070674_100005361
226 Ga0070674_100057267
227 Ga0070673_100074033
228 Ga0070688_100005891
229 Ga0070688_100035712
230 Ga0070667_100025944
231 Ga0070713_100166439
232 Ga0070701_10010342
233 Ga0070705_100034856
234 Ga0070700_100004514
235 Ga0070700_100007081
236 Ga0070700_100112572
237 Ga0070694_100003652
238 Ga0070694_100072380
239 Ga0070678_100003066
240 Ga0070707_100045427
241 Ga0070699_100032604
242 Ga0070699_100043365
243 Ga0070686_100006207
244 Ga0070695_100037269
245 Ga0070696_100002131
246 Ga0070665_100008344
247 Ga0070665_100010741
248 Ga0070665_100052482
249 Ga0070704_100012781
250 Ga0070704_100019374
251 Ga0068854_100144678
252 Ga0068854_100178053
253 Ga0070702_100001409
254 Ga0068859_100040530
255 Ga0068859_100109953
256 Ga0068864_100055489
257 Ga0068864_100070608
258 Ga0068861_100014015
259 Ga0068863_100004492
260 Ga0068863_100141371
261 Ga0068858_100193699
262 Ga0068860_100090871
263 Ga0068862_100004877
264 Ga0068862_100046439
265 Ga0068862_100186434
266 Ga0081539_10004750
267 Ga0081539_10007146
268 Ga0070712_100100582
269 Ga0097621_100030089
270 Ga0068871_100002978
271 Ga0075428_100056298
272 Ga0075428_100096115
273 Ga0075433_10036668
274 Ga0075433_10042560
275 Ga0075434_100002697
276 Ga0075434_100030099
277 Ga0075434_100139695
278 Ga0075429_100034416
279 Ga0068865_100058168
280 Ga0075436_100000268
281 Ga0075436_100002927
282 Ga0075436_100073365
283 Ga0075436_100137305
284 Ga0097620_100040530
285 Ga0097620_100109950
286 Ga0075435_100000081
287 Ga0075435_100001268
288 Ga0075435_100025987
289 Ga0075435_100053703
290 Ga0105240_10035815
291 Ga0111539_10001100
292 Ga0111539_10008101
293 Ga0111539_10009489
294 Ga0111539_10027539
295 Ga0111539_10080589
296 Ga0111539_10165394
297 Ga0114129_10001288
298 Ga0114129_10003032
299 Ga0114129_10018558
300 Ga0114129_10018575
301 Ga0114129_10030346
302 Ga0114129_10080455
303 Ga0114129_10102942
304 Ga0105242_10002346
305 Ga0105242_10011532
306 Ga0105248_10063942
307 Ga0105248_10069764
308 Ga0105246_10010000
309 Ga0157374_10188075
310 Ga0157378_10176119
311 Ga0163163_10076574
312 Ga0157380_10006749
313 Ga0157377_10023373
314 Ga0157379_10006336
315 Ga0157379_10016902
316 Ga0157379_10042079
317 Ga0157376_10022039
318 Ga0207697_10024121
319 Ga0207645_10012899
320 Ga0207707_10059909
321 Ga0207695_10058856
322 Ga0207657_10054382
323 Ga0207646_10039579
324 Ga0207646_10043706
325 Ga0207646_10092029
326 Ga0207681_10019004
327 Ga0207681_10039866
328 Ga0207681_10054387
329 Ga0207650_10106889
330 Ga0207659_10051641
331 Ga0207644_10078363
332 Ga0207706_10159664
333 Ga0207686_10015937
334 Ga0207686_10038613
335 Ga0207669_10032392
336 Ga0207704_10035691
337 Ga0207704_10068889
338 Ga0207665_10089716
339 Ga0207691_10010163
340 Ga0207711_10032632
341 Ga0207711_10104918
342 Ga0207711_10136375
343 Ga0207679_10092779
344 Ga0207658_10020576
345 Ga0207677_10139482
346 Ga0207703_10005455
347 Ga0207708_10023636
348 Ga0207708_10060743
349 Ga0207641_10153469
350 Ga0207648_10012387
351 Ga0207675_100003996
352 Ga0207683_10092180
353 Ga0207683_10147066
354 Ga0207428_10009920
355 Ga0207428_10020622
356 Ga0207428_10029358
357 Ga0207428_10124299
358 Ga0268266_10004816
359 Ga0268265_10067684
360 Ga0307407_10046938
361 Ga0307409_100001635
362 Ga0373959_0001661
363 Ga0373929_0000410
364 Ga0373949_0001362
365 Ga0373942_0000493
366 Ga0373931_0003536
367 Ga0373935_0046795
368 Ga0373937_0010839
369 Ga0373937_0055793
370 Ga0451853_2640764
371 Ga0439462_0017070
372 Ga0451576_0003788
373 Ga0451576_0199486
374 Ga0495629_0103331
375 Ga0495621_0002550
376 Ga0495645_0008755
377 Ga0495658_0057191
378 Ga0495674_0192199
379 Ga0495684_0123766
380 Ga0496105_0285031
381 Ga0496106_0081092
382 Ga0496108_0048613
383 Ga0496112_0035050
384 Ga0501036_0210995
385 Ga0501073_0004290
386 nmdc:mga05p37_19641_c1
387 nmdc:mga05p37_198956_c1
388 nmdc:mga05p37_223782_c1
389 nmdc:mga05p37_2733_c1
390 nmdc:mga05p37_33175_c1
391 nmdc:mga05p37_45488_c1
392 nmdc:mga05p37_83054_c1
393 nmdc:mga05p37_9449_c1
394 nmdc:mga09592_25736_c1
395 nmdc:mga08y16_17615_c1
396 nmdc:mga08y16_17642_c1
397 nmdc:mga08y16_53444_c1
398 nmdc:mga08y16_8968_c1
399 nmdc:mga0n895_146_c1
400 nmdc:mga0n895_193477_c1
401 nmdc:mga0n895_326439_c1
402 nmdc:mga0n895_35592_c1
403 nmdc:mga0n895_472669_c1
404 nmdc:mga0n895_56219_c1
405 nmdc:mga0rr50_33_c1
406 nmdc:mga0rr50_42212_c1
407 nmdc:mga0rr50_78219_c1
408 nmdc:mga08x19_128_c1
409 nmdc:mga08x19_19587_c1
410 nmdc:mga0a205_115617_c1
411 nmdc:mga0a205_13264_c1
412 nmdc:mga0a205_68630_c1
413 Ga0495619_0078981
414 Ga0500555_005611
415 2862515751
416 2990089593

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02667

SCFA_trans

Short chain fatty acid transporter

263

500

0.94

PF02667

SCFA_trans

Short chain fatty acid transporter

7

233

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
4r0c-assembly1.cif.gz_D crystal structure of the alcanivorax borkumensis ydah transporter reveals an unusual topology 0.5348 1 446
4r0c-assembly1.cif.gz_D crystal structure of the alcanivorax borkumensis ydah transporter reveals an unusual topology 0.5312 1 446
4r0c-assembly1.cif.gz_B crystal structure of the alcanivorax borkumensis ydah transporter reveals an unusual topology 0.5268 2 444
4r0c-assembly1.cif.gz_B crystal structure of the alcanivorax borkumensis ydah transporter reveals an unusual topology 0.5203 2 444
6wu1-assembly1.cif.gz_A structure of apo laindy 0.5161 30 442
ID Description Score Start End Superfamily
af_Q2G226_6_195_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.2601 301 444 1.20.1250.20
af_Q09965_25_363_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.2474 27 424 1.20.1070.10
af_A4HSH0_358_564_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.2365 242 438 1.20.1250.20
af_Q09965_25_363_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.2298 27 424 1.20.1070.10
af_Q9UAQ1_4_302_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.2246 28 375 1.20.1070.10
ID Description Score Start End GO Terms
AF-A0A522N1H4-F1-model_v4 Short-chain fatty acid transporter 0.9756 1 446 GO:0005886
AF-A0A101D0F5-F1-model_v4 Short-chain fatty acids transporter 0.9598 1 443 GO:0005886
AF-A0A2N1R764-F1-model_v4 Short-chain fatty acid transporter 0.9534 1 439 GO:0005886
AF-A0A522N1H4-F1-model_v4 Short-chain fatty acid transporter 0.952 1 446 GO:0005886
AF-A0A1Q8UUB6-F1-model_v4 deleted 0.9508 1 442

Map